Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Forward (+)

22665224 .. 22667868

Gene Structure 2645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG240000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGAAGCTGTATCAGTGCGTGTACTTGATAGCGATTTTCGTCGCGGCTGTTCTGGTGGCGTCCACAGCCGAGAGTTTTACTGATCCGAATGACCTCATAGCTCTTCAAGATCTTTACAAGACCCTCAACCAACCGCCACAGCTGACGGGTTGGAGATTGGATGGTGGGGATCCTTGCTTAGAATGGATTGGTGTCTCCTGCATTTACAATGGAGTTGTATACCTGAACCTTAGAGGTCTGAATCTGACTGGGTACATCAGTCCCAAGATCAGATATCTTTACAATTTGCAGCTATTTGATATTAGTTCCAATACCATTGGTGGTGAAATTCCACATGTCTTACCCCCCAATGCGACTGATATAAATATGGCATACAACTATTTGAGCCACAATATTCCCCCATCCTTACATGGCATGAAAAGTCTCCGACATTTGAATCTGAGCCACAATTTGTTATCTGGACCCATTGGCAATGTTTTTACCGGCCTACAGAATTTAAGAGAAATGGATTTGTCATATAATAACTTTACTGGAGATCTTCCAAGTTCATTTGAATCCCTCACAAATCTCACTGGACTGTACTTGCAGAATAACCGATTCACTGGATCAGTTTCTTACCTAGCTGAACTTCCACTAATTGATCTGAATATCGAATGCAATTATTTCAGTGGTATCATCCCCAGACATTTTCAGTCCATACCAAATTTATGGATCGGGGGAAATAGTCTTCATCTTCCAGGGCACAACCATCCACCCCACTCTGGAAAAGCAGGCAAGTGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

262

Amino Acids

29.08

Weight (kDa)

6.08

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	30 - 68	3.5e-07	Leucine rich repeat N-terminal domain
LRR_8	PF13855	160 - 201	1.6e-08	Leucine rich repeat
LRR_4	PF12799	165 - 201	1.6e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	1 cut(s)	47
AciI	CCGC	2 cut(s)	47, 137
AclWI	GGATC	5 cut(s)	80, 167, 180, 616, 722
AcsI	RAATTY	3 cut(s)	330, 496, 706
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	3 cut(s)	26, 257, 584
AfiI	CCNNNNNNNGG	1 cut(s)	764
AflIII	ACRYGT	1 cut(s)	337
AgsI	TTSAA	3 cut(s)	110, 439, 557
AjnI	CCWGG	1 cut(s)	739
AluBI	AGCT	5 cut(s)	10, 104, 145, 295, 626
AluI	AGCT	5 cut(s)	10, 104, 145, 295, 626
Alw26I	GTCTC	2 cut(s)	202, 431
AlwI	GGATC	5 cut(s)	80, 167, 180, 616, 722
AoxI	GGCC	1 cut(s)	487
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	3 cut(s)	330, 496, 706
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	464
BaeGI	GKGCMC	1 cut(s)	747
BaeI	ACNNNNGTAYC	2 cut(s)	247, 280
BamHI	GGATCC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	722
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	3 cut(s)	158, 412, 759
BciT130I	CCWGG	1 cut(s)	741
BcoDI	GTCTC	2 cut(s)	202, 431
BfaI	CTAG	1 cut(s)	623
BfmI	CTRYAG	1 cut(s)	491
BglII	AGATCT	2 cut(s)	112, 538
BisI	GCNGC	2 cut(s)	48, 293
BlsI	GCNGC	2 cut(s)	49, 294
Bme1390I	CCNGG	1 cut(s)	741
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	2 cut(s)	174, 466
BmrFI	CCNGG	1 cut(s)	741
BmrI	ACTGGG	1 cut(s)	261
BmuI	ACTGGG	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	722
BpmI	CTGGAG	1 cut(s)	555
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	740
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	764
Bse118I	RCCGGY	1 cut(s)	485
Bse1I	ACTGG	4 cut(s)	256, 538, 580, 610
Bse3DI	GCAATG	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	741
BseDI	CCNNGG	1 cut(s)	740
BseGI	GGATG	4 cut(s)	169, 404, 678, 751
BseLI	CCNNNNNNNGG	1 cut(s)	764
BseMI	GCAATG	1 cut(s)	481
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	4 cut(s)	256, 538, 580, 610
BseSI	GKGCMC	1 cut(s)	747
BseXI	GCAGC	1 cut(s)	304
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	489
BsiSI	CCGG	1 cut(s)	486
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	764
BsmAI	GTCTC	2 cut(s)	202, 431
BsmFI	GGGAC	1 cut(s)	249
BsmI	GAATGC	1 cut(s)	662
BsnI	GGCC	1 cut(s)	489
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp143I	GATC	8 cut(s)	85, 112, 172, 270, 538, 608, 643, 714
BspACI	CCGC	2 cut(s)	47, 137
BspANI	GGCC	1 cut(s)	489
BspCNI	CTCAG	1 cut(s)	435
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	2 cut(s)	174, 466
BspPI	GGATC	5 cut(s)	80, 167, 180, 616, 722
BspQI	GCTCTTC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	481
BsrFI	RCCGGY	1 cut(s)	485
BsrI	ACTGG	4 cut(s)	256, 538, 580, 610
BssAI	RCCGGY	1 cut(s)	485
BssECI	CCNNGG	1 cut(s)	740
BssMI	GATC	8 cut(s)	85, 112, 172, 270, 538, 608, 643, 714
BssNAI	GTATAC	1 cut(s)	223
BssNI	GRCGYC	1 cut(s)	62
Bst1107I	GTATAC	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	741
Bst4CI	ACNGT	1 cut(s)	582
Bst6I	CTCTTC	1 cut(s)	111
BstACI	GRCGYC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	775
BstDEI	CTNAG	3 cut(s)	181, 233, 443
BstF5I	GGATG	4 cut(s)	169, 404, 678, 751
BstFNI	CGCG	1 cut(s)	47
BstKTI	GATC	8 cut(s)	88, 115, 175, 273, 541, 611, 646, 717
BstMAI	GTCTC	2 cut(s)	202, 431
BstMBI	GATC	8 cut(s)	85, 112, 172, 270, 538, 608, 643, 714
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	741
BstNSI	RCATGY	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	739
BstSFI	CTRYAG	1 cut(s)	491
BstSLI	GKGCMC	1 cut(s)	747
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	304
BstV2I	GAAGAC	1 cut(s)	722
BstX2I	RGATCY	3 cut(s)	112, 172, 538
BstXI	CCANNNNNNTGG	1 cut(s)	711
BstYI	RGATCY	3 cut(s)	112, 172, 538
BstZ17I	GTATAC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	489
BtsCI	GGATG	4 cut(s)	169, 404, 678, 751
BtsIMutI	CAGTG	4 cut(s)	23, 573, 603, 676
Cac8I	GCNNGC	1 cut(s)	775
Cfr10I	RCCGGY	1 cut(s)	485
Cfr13I	GGNCC	1 cut(s)	464
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	3 cut(s)	25, 256, 583
CviAII	CATG	3 cut(s)	338, 413, 418
CviQI	GTAC	3 cut(s)	25, 256, 583
DdeI	CTNAG	3 cut(s)	181, 233, 443
DpnI	GATC	8 cut(s)	87, 114, 174, 272, 540, 610, 645, 716
DpnII	GATC	8 cut(s)	85, 112, 172, 270, 538, 608, 643, 714
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	739
EcoRV	GATATC	1 cut(s)	278
FaeI	CATG	3 cut(s)	341, 416, 421
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	3 cut(s)	337, 412, 417
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	48, 293
FokI	GGATG	4 cut(s)	176, 391, 665, 738
Fsp4HI	GCNGC	2 cut(s)	48, 293
FspBI	CTAG	1 cut(s)	623
GluI	GCNGC	2 cut(s)	48, 293
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	1 cut(s)	489
HapII	CCGG	1 cut(s)	486
HgaI	GACGC	1 cut(s)	51
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	341, 416, 421
HinfI	GANTC	4 cut(s)	244, 439, 557, 600
HpaII	CCGG	1 cut(s)	486
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	3 cut(s)	25, 66, 223
Hpy188I	TCNGA	7 cut(s)	90, 243, 249, 275, 431, 444, 648
Hpy188III	TCNNGA	3 cut(s)	110, 462, 765
Hpy8I	GTNNAC	3 cut(s)	25, 66, 223
Hpy99I	CGWCG	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	582
HpyCH4V	TGCA	4 cut(s)	204, 292, 589, 660
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	3 cut(s)	181, 233, 443
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	3 cut(s)	341, 416, 421
Kzo9I	GATC	8 cut(s)	85, 112, 172, 270, 538, 608, 643, 714
LguI	GCTCTTC	1 cut(s)	111
Lsp1109I	GCAGC	1 cut(s)	304
MaeI	CTAG	1 cut(s)	623
MalI	GATC	8 cut(s)	87, 114, 174, 272, 540, 610, 645, 716
MboI	GATC	8 cut(s)	85, 112, 172, 270, 538, 608, 643, 714
MboII	GAAGA	4 cut(s)	98, 533, 722, 728
MflI	RGATCY	3 cut(s)	112, 172, 538
MhlI	GDGCHC	1 cut(s)	747
MluCI	AATT	7 cut(s)	286, 330, 451, 496, 639, 661, 706
MmeI	TCCRAC	2 cut(s)	134, 454
MnlI	CCTC	4 cut(s)	107, 137, 230, 572
MseI	TTAA	1 cut(s)	500
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	1 cut(s)	486
MspR9I	CCNGG	1 cut(s)	741
Mva1269I	GAATGC	1 cut(s)	662
MvaI	CCWGG	1 cut(s)	741
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	8 cut(s)	85, 112, 172, 270, 538, 608, 643, 714
NlaIII	CATG	3 cut(s)	341, 416, 421
NlaIV	GGNNCC	2 cut(s)	174, 466
NmeAIII	GCCGAG	1 cut(s)	97
NspI	RCATGY	1 cut(s)	341
PciI	ACATGT	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	111
PctI	GAATGC	1 cut(s)	662
PfeI	GAWTC	4 cut(s)	244, 439, 557, 600
PkrI	GCNGC	2 cut(s)	49, 294
PscI	ACATGT	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	739
PspGI	CCWGG	1 cut(s)	739
PspN4I	GGNNCC	2 cut(s)	174, 466
PspPI	GGNCC	1 cut(s)	464
PsuI	RGATCY	3 cut(s)	112, 172, 538
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	3 cut(s)	26, 257, 584
RsaNI	GTAC	3 cut(s)	25, 256, 583
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	500
SatI	GCNGC	2 cut(s)	48, 293
Sau3AI	GATC	8 cut(s)	85, 112, 172, 270, 538, 608, 643, 714
Sau96I	GGNCC	1 cut(s)	464
ScrFI	CCNGG	1 cut(s)	741
SduI	GDGCHC	1 cut(s)	747
SfcI	CTRYAG	1 cut(s)	491
SinI	GGWCC	1 cut(s)	464
Sse9I	AATT	7 cut(s)	286, 330, 451, 496, 639, 661, 706
SsiI	CCGC	2 cut(s)	47, 137
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	1 cut(s)	623
StyD4I	CCNGG	1 cut(s)	739
TaaI	ACNGT	1 cut(s)	582
TaqI	TCGA	1 cut(s)	654
TasI	AATT	7 cut(s)	286, 330, 451, 496, 639, 661, 706
TatI	WGTACW	2 cut(s)	24, 582
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	4 cut(s)	244, 439, 557, 600
Tru1I	TTAA	1 cut(s)	500
Tru9I	TTAA	1 cut(s)	500
TscAI	CASTG	4 cut(s)	23, 580, 610, 676
TseI	GCWGC	1 cut(s)	292
TspDTI	ATGAA	3 cut(s)	434, 540, 722
TspRI	CASTG	4 cut(s)	23, 580, 610, 676
VpaK11BI	GGWCC	1 cut(s)	464
XapI	RAATTY	3 cut(s)	330, 496, 706
XceI	RCATGY	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.