Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Reverse (-)

15752110 .. 15752995

Gene Structure 886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG177400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGCGACCAAGTATCAGTACTTGTTTTTGACGGTGCTTTTCATGGCGGTTGTTATGGCTTCTCTGACTGAGGCTTTTACTGATCCACTCGACGCCACAGCTCTTCAAGAGCTTTACAAATCCCTTAACAGTCCACCACAGCTGACGGGTTGGAGATTGGGTGGTGGCGATCCTTGTGATGAATCGTGGACTGGAGTGTCATGTTCTGGGTCTCATGTTACAGAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

76

Amino Acids

8.28

Weight (kDa)

4.28

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 69	1.7e-10	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	196
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	2 cut(s)	77, 164
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	107
AluBI	AGCT	3 cut(s)	101, 112, 142
AluI	AGCT	3 cut(s)	101, 112, 142
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	2 cut(s)	77, 164
BcoDI	GTCTC	1 cut(s)	216
BmcAI	AGTACT	1 cut(s)	20
BpmI	CTGGAG	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	216
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bse1I	ACTGG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	216
Bso31I	GGTCTC	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	82, 169
BspACI	CCGC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	61
BspPI	GGATC	2 cut(s)	77, 164
BspQI	GCTCTTC	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	196
BssMI	GATC	2 cut(s)	82, 169
BssNI	GRCGYC	1 cut(s)	93
Bst4CI	ACNGT	2 cut(s)	34, 131
Bst6I	CTCTTC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	69
BstKTI	GATC	2 cut(s)	85, 172
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	2 cut(s)	82, 169
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	3 cut(s)	43, 201, 215
CviJI	RGCY	5 cut(s)	59, 74, 101, 112, 142
CviKI_1	RGCY	5 cut(s)	59, 74, 101, 112, 142
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	2 cut(s)	84, 171
DpnII	GATC	2 cut(s)	82, 169
DrdI	GACNNNNNNGTC	1 cut(s)	196
DseDI	GACNNNNNNGTC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	216
FaeI	CATG	3 cut(s)	46, 204, 218
FaiI	YATR	4 cut(s)	44, 56, 202, 216
FatI	CATG	3 cut(s)	42, 200, 214
GsuI	CTGGAG	1 cut(s)	213
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	46, 204, 218
HinfI	GANTC	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	134, 189
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	2 cut(s)	134, 189
Hpy99I	CGWCG	1 cut(s)	95
HpyCH4III	ACNGT	2 cut(s)	34, 131
HpyF3I	CTNAG	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	46, 204, 218
Kzo9I	GATC	2 cut(s)	82, 169
LguI	GCTCTTC	1 cut(s)	108
LpnPI	CCDG	2 cut(s)	177, 192
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	84, 171
MboI	GATC	2 cut(s)	82, 169
MboII	GAAGA	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	1 cut(s)	64
MseI	TTAA	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	142
NdeII	GATC	2 cut(s)	82, 169
NlaIII	CATG	3 cut(s)	46, 204, 218
PciSI	GCTCTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	82, 169
ScaI	AGTACT	1 cut(s)	20
SetI	ASST	3 cut(s)	103, 114, 144
SsiI	CCGC	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	34, 131
TaqI	TCGA	1 cut(s)	90
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TspDTI	ATGAA	2 cut(s)	31, 195
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.