Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000664

Physical Location & Seq

Genomic Coordinates Forward (+)

25660567 .. 25665636

Gene Structure 5070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG262800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2013 bp

ATGGCGAAGTTGTACCGGTTCGTGTACTTCATGGCGGTTTTCTTCTCGGCGGTTCTGGTGGCGTCCCCGGCTGGGGCTTTTACTGATCCACTTGACGTCGTAGCTCTTAATGATCTTTACAAGACCCTCAACCAACCGCCACAGCTGACGGGTTGGAGATTGCATGGTGGGGATCCTTGCGATGAATCGTGGAATGGAGTGTCATGCTTTGGCTCTTCTGTGATATACCTGAATCTAAGCCACAATTTGTTATCTGGACCCATTGGCAATGTTTTTACCGGCCTACAGAATTTAAGAGAAATGGATTTGTCATATAATAACTTTACTGGAGATCTGCCAAGTTCATTTGGATCCCTCACAAATCTAACTGGACTGTACTTGCAGAAGAACCAATTCACTGGATCAGTTGCTTACCTAGCCGAACTTCCACTAATTGATCTGAACATCCAAGATAATTATTTCAGTGGTATCATCCCCAGTCATTTTCAGTCCATACCAAATTTATGGATTGGAGGAAATAGTTTTCATCTTCCAGGGGACAACTATCCACCCTGGGATTTCCCTCTGGAAACGCAGACAAGTGTCATTGAACAGAACATCCACCCCCCTCCAGCAACTCAGTCAAGTGCCATGGAGAAGAGCAAACCCTCTACCAAATTTGGTGGACACAAGAAGAGGAGGCTTGGCCCTGGAGGAATAGCTTTTATGATTGGTGGAGGAACTCTAGTCGCATCATGTGTGGCACTTTACATTGCAGTTCGTATCAAACAATCACGTGCACAGAAGCTTATAACTTTGGGGGGCAGTAATAGTTCAATCCACTCTTTCTCAGTCATAAATATGGCCAAAGATAGTCCTATGAATGCACGAGAAGAAAGCCCACCAATACTGACTTTCAGGCCACCCATTCTACTTCCAAGGCGACTACCTCCAGTTTATCATAGCAGAGTAGAGAAAACGAGAAGAAAAAGTTTCTCTGATAAATGCAGTTTCCCAGTGAGAATCAAACTATATACTGTGTCAGAGCTTCAGTCAGCTACGAACAGCTTTGCAGAAGAAAAGTTTCTGGGCCAAGGATCTCTTGGTTCTGTTTACAAAGCCGAGTTTCCTGATGGCCAAATTTTGGCTGTAAAGAACATCAAGATGTCTGGACTCTCTTTCCATGAAGAAGAACAATTCCTGGATGTCGTTTGGACTGTTTCGCGTTTGAAGCACCCAAACATTGTACCACTTGTTGGCTATTGTGTGGAGAATGGACAACATCTCCTTGTGCATGAATATGTTGGAAATTTATCCCTTGATGAGGCACTTCACAGCGATGCATACAAGCCTCTGTCCTGGGGCCTCCGTCTCCAAATTGCTCTTGGTGTTGCTCAAGCTTTGGACTATCTGCACTCCACATTGTCGCCTTCAGTAGCTCATGGCAACTTGAAGAGCGAAAATATCTTACTTGATGAAGAACTTGCTCCTCATATCTGTGACTGCGGACTTGCTATTTTGAGGCCACTTACAAGCAATAGTCTTAAACTGAAGGCTTCAGAAAATGCTGTTGGTGACACTGGCTACATTGCACCTGAGCATGGCCTACCAGGGTTTGATAAGACAAAGAGTGACATCTATGCCTTCGGAGTGCTGCTTTTGGAGCTCTTAACAGGAAGGAGACCTTCTGATAGTTCAAGACCAAGGGAAGAGCAATCACTGGTGAAATGGGCTTCATTGCGGCTTCATGACACTGAGAGTCTGGATGAGATGATCGATCCAGGCATTAAAAAGACATGTTCCTCCAAGGCTCTCTCAAATTTTGCTGATATTATCTCCCTCTGTATACAGCCAGTGAAGGAATTCAGACCGCCAATGTCTGAAGTTGTGGGATCCCTAACACAACTAATGCAGAAGCTCAAGGGGAAAGGCAATGGAGCGGATGGTACACAATTTGACCCCTTCGAGAGATCTTTTCGTTCAACCAACACCCGCTTCATGGGCTCACCTACATTGAGCTATTTTTCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

670

Amino Acids

73.71

Weight (kDa)

7.01

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	32 - 69	8.6e-07	Leucine rich repeat N-terminal domain
LRR_8	PF13855	76 - 132	2.7e-08	Leucine rich repeat
Pkinase	PF00069	351 - 623	2.3e-33	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	353 - 625	4.2e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0000664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06820
fragaria_vesca	FvH4_6g22260 FvH4_6g22260 FvH4_6g22260 FvH4_6g22370 FvH4_6g22660 FvH4_6g22660
malus_domestica	MD12G1060500.v1.1 MD12G1060800.v1.1 MD13G1140200.v1.1 MD14G1060500.v1.1
prunus_persica	Prupe.6G256200_v2.0.a1 Prupe.6G256200_v2.0.a1 Prupe.7G074000_v2.0.a1 Prupe.7G074000_v2.0.a1
pyrus_communis	pycom14g04900
rosa_chinensis	RchiOBHm_Chr2g0158881 RchiOBHm_Chr3g0476831 RchiOBHm_Chr3g0476851 RchiOBHm_Chr3g0476861 RchiOBHm_Chr3g0480221
rosa_laevigata	RLG00000021120 RLG00000023509 RLG00000023748 RLG00000024125 RLG00000029770 RLG00000029771
rosa_multiflora	Rmu_co8335633.1_g000001 Rmu_sc0002267.1_g000010 Rmu_sc0002679.1_g000001 Rmu_sc0006148.1_g000002 Rmu_sc0008085.1_g000009 Rmu_sc0009296.1_g000001 Rmu_sc0009296.1_g000015 Rmu_sc0014404.1_g000008 Rmu_sc0041425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090920 Rroxscaffold_4G00319720 Rroxscaffold_4G00319850 Rroxscaffold_6G00401690 Rroxscaffold_6G00404530 Rroxscaffold_6G00404980 Rroxscaffold_6G00409500
rosa_rugosa	Rorug02G0473000 Rorug03G0157100 Rorug03G0181200 Rorug03G0181300
rosa_samantha	Rh1AG112100 Rh1CG109100 Rh1DG113400 Rh1DG117300 Rh2AG539100 Rh2BG551800 Rh2BG551900 Rh2CG522500 Rh2DG561600 Rh3AG171500 Rh3AG207000 Rh3AG207400 Rh3AG233000 Rh3BG197100 Rh3BG239900 Rh3BG240000 Rh3BG265600 Rh3CG188000 Rh3CG188100 Rh3CG233700 Rh3CG262800 Rh3DG177300 Rh3DG177400 Rh3DG233700 Rh3DG258800
rosa_wichuraiana	Rw0G002320 Rw3G016860 Rw3G020460 Rw3G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	791
AatII	GACGTC	1 cut(s)	99
AccB7I	CCANNNNNTGG	2 cut(s)	1123, 1235
AccBSI	CCGCTC	1 cut(s)	1919
AccI	GTMKAC	1 cut(s)	1825
AccII	CGCG	1 cut(s)	1204
AciI	CCGC	8 cut(s)	35, 50, 137, 1485, 1720, 1850, 1919, 1972
AcoI	YGGCCR	2 cut(s)	843, 1114
AcsI	RAATTY	7 cut(s)	289, 499, 656, 1119, 1288, 1798, 1841
AcuI	CTGAAG	5 cut(s)	1013, 1395, 1521, 1550, 1881
AcvI	CACGTG	1 cut(s)	776
AcyI	GRCGYC	2 cut(s)	62, 96
AfaI	GTAC	5 cut(s)	14, 26, 377, 1227, 1927
AfiI	CCNNNNNNNGG	7 cut(s)	72, 73, 1123, 1235, 1303, 1580, 1978
AflIII	ACRYGT	1 cut(s)	1775
AgeI	ACCGGT	1 cut(s)	15
AgsI	TTSAA	6 cut(s)	590, 816, 1210, 1432, 1677, 1962
AjnI	CCWGG	7 cut(s)	532, 551, 688, 1179, 1337, 1588, 1759
AjuI	GAANNNNNNNTTGG	4 cut(s)	1533, 1565, 1958, 1990
AloI	GAACNNNNNNTCC	2 cut(s)	582, 614
Alw21I	GWGCWC	2 cut(s)	781, 1647
Alw26I	GTCTC	2 cut(s)	1355, 1654
Alw44I	GTGCAC	1 cut(s)	777
AoxI	GGCC	9 cut(s)	280, 685, 843, 899, 1069, 1114, 1342, 1502, 1582
ApaLI	GTGCAC	1 cut(s)	777
ApeKI	GCWGC	1 cut(s)	1633
ApoI	RAATTY	7 cut(s)	289, 499, 656, 1119, 1288, 1798, 1841
AsiGI	ACCGGT	1 cut(s)	15
Asp700I	GAANNNNTTC	3 cut(s)	392, 1062, 1841
AspS9I	GGNCC	4 cut(s)	257, 686, 1069, 1342
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	3 cut(s)	1565, 1714, 1977
AvaII	GGWCC	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	781
BalI	TGGCCA	2 cut(s)	845, 1116
BamHI	GGATCC	3 cut(s)	172, 350, 1871
BanII	GRGCYC	2 cut(s)	1647, 1985
BauI	CACGAG	1 cut(s)	867
BbrPI	CACGTG	1 cut(s)	776
Bbv12I	GWGCWC	2 cut(s)	781, 1647
BbvI	GCAGC	1 cut(s)	1620
BccI	CCATC	2 cut(s)	1106, 1916
BciT130I	CCWGG	7 cut(s)	534, 553, 690, 1181, 1339, 1590, 1761
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	2 cut(s)	1355, 1654
BfaI	CTAG	2 cut(s)	416, 725
BfmI	CTRYAG	1 cut(s)	284
BglII	AGATCT	2 cut(s)	331, 1949
BisI	GCNGC	2 cut(s)	1634, 1721
BlsI	GCNGC	2 cut(s)	1635, 1722
Bme1390I	CCNGG	8 cut(s)	68, 534, 553, 690, 1181, 1339, 1590, 1761
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	4 cut(s)	257, 686, 1069, 1342
BmiI	GGNNCC	5 cut(s)	174, 259, 352, 1343, 1873
BmrFI	CCNGG	8 cut(s)	68, 534, 553, 690, 1181, 1339, 1590, 1761
BmrI	ACTGGG	2 cut(s)	471, 989
BmsI	GCATC	2 cut(s)	740, 1309
BmuI	ACTGGG	2 cut(s)	471, 989
BoxI	GACNNNNGTC	1 cut(s)	581
BpmI	CTGGAG	4 cut(s)	348, 594, 711, 915
Bpu10I	CCTNAGC	1 cut(s)	1575
BpuEI	CTTGAG	2 cut(s)	1359, 1883
BpuMI	CCSGG	1 cut(s)	68
Bsa29I	ATCGAT	1 cut(s)	1755
BsaAI	YACGTR	1 cut(s)	776
BsaHI	GRCGYC	2 cut(s)	62, 96
BsaI	GGTCTC	1 cut(s)	1654
BsaWI	WCCGGW	1 cut(s)	15
BsaXI	ACNNNNNCTCC	2 cut(s)	1248, 1278
Bsc4I	CCNNNNNNNGG	7 cut(s)	72, 73, 1123, 1235, 1303, 1580, 1978
Bse118I	RCCGGY	2 cut(s)	15, 278
Bse1I	ACTGG	9 cut(s)	331, 373, 403, 477, 932, 995, 1564, 1704, 1832
Bse3DI	GCAATG	5 cut(s)	274, 750, 1566, 1715, 1918
BseBI	CCWGG	7 cut(s)	534, 553, 690, 1181, 1339, 1590, 1761
BseCI	ATCGAT	1 cut(s)	1755
BseGI	GGATG	6 cut(s)	444, 471, 597, 1189, 1750, 1927
BseLI	CCNNNNNNNGG	7 cut(s)	72, 73, 1123, 1235, 1303, 1580, 1978
BseMI	GCAATG	5 cut(s)	274, 750, 1566, 1715, 1918
BseMII	CTCAG	4 cut(s)	632, 843, 1566, 1725
BseNI	ACTGG	9 cut(s)	331, 373, 403, 477, 932, 995, 1564, 1704, 1832
BseRI	GAGGAG	2 cut(s)	691, 1458
BseSI	GKGCMC	1 cut(s)	781
BseXI	GCAGC	1 cut(s)	1620
BseYI	CCCAGC	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	1376
Bsh1236I	CGCG	1 cut(s)	1204
BshFI	GGCC	9 cut(s)	282, 687, 845, 901, 1071, 1116, 1344, 1504, 1584
BshTI	ACCGGT	1 cut(s)	15
BshVI	ATCGAT	1 cut(s)	1755
BsiHKAI	GWGCWC	2 cut(s)	781, 1647
BsiSI	CCGG	3 cut(s)	16, 68, 279
BslFI	GGGAC	2 cut(s)	49, 551
BslI	CCNNNNNNNGG	7 cut(s)	72, 73, 1123, 1235, 1303, 1580, 1978
BsmAI	GTCTC	2 cut(s)	1355, 1654
BsmBI	CGTCTC	1 cut(s)	1355
BsmFI	GGGAC	2 cut(s)	49, 551
BsmI	GAATGC	1 cut(s)	868
BsnI	GGCC	9 cut(s)	282, 687, 845, 901, 1071, 1116, 1344, 1504, 1584
Bso31I	GGTCTC	1 cut(s)	1654
Bsp1286I	GDGCHC	3 cut(s)	781, 1647, 1985
Bsp19I	CCATGG	1 cut(s)	630
BspACI	CCGC	8 cut(s)	35, 50, 137, 1485, 1720, 1850, 1919, 1972
BspANI	GGCC	9 cut(s)	282, 687, 845, 901, 1071, 1116, 1344, 1504, 1584
BspCNI	CTCAG	4 cut(s)	631, 842, 1567, 1726
BspDI	ATCGAT	1 cut(s)	1755
BspFNI	CGCG	1 cut(s)	1204
BspHI	TCATGA	1 cut(s)	1726
BspLI	GGNNCC	5 cut(s)	174, 259, 352, 1343, 1873
BspQI	GCTCTTC	4 cut(s)	220, 632, 1427, 1683
BspTNI	GGTCTC	1 cut(s)	1654
BsrBI	CCGCTC	1 cut(s)	1919
BsrDI	GCAATG	5 cut(s)	274, 750, 1566, 1715, 1918
BsrFI	RCCGGY	2 cut(s)	15, 278
BsrI	ACTGG	9 cut(s)	331, 373, 403, 477, 932, 995, 1564, 1704, 1832
BssAI	RCCGGY	2 cut(s)	15, 278
BssNAI	GTATAC	1 cut(s)	1826
BssNI	GRCGYC	2 cut(s)	62, 96
BssSI	CACGAG	1 cut(s)	867
BssT1I	CCWWGG	5 cut(s)	630, 917, 1072, 1682, 1785
Bst1107I	GTATAC	1 cut(s)	1826
Bst2BI	CACGAG	1 cut(s)	867
Bst2UI	CCWGG	7 cut(s)	534, 553, 690, 1181, 1339, 1590, 1761
Bst4CI	ACNGT	3 cut(s)	375, 1018, 1198
Bst6I	CTCTTC	5 cut(s)	220, 632, 668, 1427, 1683
BstACI	GRCGYC	2 cut(s)	62, 96
BstBAI	YACGTR	1 cut(s)	776
BstDEI	CTNAG	5 cut(s)	236, 618, 829, 1575, 1734
BstDSI	CCRYGG	1 cut(s)	630
BstENI	CCTNNNNNAGG	1 cut(s)	1301
BstF5I	GGATG	6 cut(s)	444, 471, 597, 1189, 1750, 1927
BstFNI	CGCG	1 cut(s)	1204
BstMAI	GTCTC	2 cut(s)	1355, 1654
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 416, 1210, 1642, 1980
BstNI	CCWGG	7 cut(s)	534, 553, 690, 1181, 1339, 1590, 1761
BstNSI	RCATGY	1 cut(s)	1779
BstPAI	GACNNNNGTC	1 cut(s)	581
BstSCI	CCNGG	8 cut(s)	66, 532, 551, 688, 1179, 1337, 1588, 1759
BstSFI	CTRYAG	1 cut(s)	284
BstSLI	GKGCMC	1 cut(s)	781
BstUI	CGCG	1 cut(s)	1204
BstV1I	GCAGC	1 cut(s)	1620
BstX2I	RGATCY	6 cut(s)	172, 331, 350, 1076, 1871, 1949
BstXI	CCANNNNNNTGG	2 cut(s)	398, 504
BstYI	RGATCY	6 cut(s)	172, 331, 350, 1076, 1871, 1949
BstZ17I	GTATAC	1 cut(s)	1826
Bsu15I	ATCGAT	1 cut(s)	1755
BsuRI	GGCC	9 cut(s)	282, 687, 845, 901, 1071, 1116, 1344, 1504, 1584
BsuTUI	ATCGAT	1 cut(s)	1755
BtgI	CCRYGG	1 cut(s)	630
BtgZI	GCGATG	2 cut(s)	195, 1332
BtsCI	GGATG	6 cut(s)	444, 471, 597, 1189, 1750, 1927
BtsIMutI	CAGTG	7 cut(s)	396, 469, 1002, 1557, 1697, 1731, 1839
CciI	TCATGA	1 cut(s)	1726
Cfr10I	RCCGGY	2 cut(s)	15, 278
Cfr13I	GGNCC	4 cut(s)	257, 686, 1069, 1342
ClaI	ATCGAT	1 cut(s)	1755
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	5 cut(s)	13, 25, 376, 1226, 1926
CspAI	ACCGGT	1 cut(s)	15
CspCI	CAANNNNNGTGG	2 cut(s)	643, 678
CviQI	GTAC	5 cut(s)	13, 25, 376, 1226, 1926
DdeI	CTNAG	5 cut(s)	236, 618, 829, 1575, 1734
EaeI	YGGCCR	2 cut(s)	843, 1114
Eam1104I	CTCTTC	5 cut(s)	220, 632, 668, 1427, 1683
EarI	CTCTTC	5 cut(s)	220, 632, 668, 1427, 1683
Ecl136II	GAGCTC	1 cut(s)	1645
Eco130I	CCWWGG	5 cut(s)	630, 917, 1072, 1682, 1785
Eco24I	GRGCYC	2 cut(s)	1647, 1985
Eco31I	GGTCTC	1 cut(s)	1654
Eco47I	GGWCC	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	1645
Eco57I	CTGAAG	5 cut(s)	1013, 1395, 1521, 1550, 1881
Eco72I	CACGTG	1 cut(s)	776
EcoICRI	GAGCTC	1 cut(s)	1645
EcoNI	CCTNNNNNAGG	1 cut(s)	1301
EcoO109I	RGGNCCY	1 cut(s)	1342
EcoRI	GAATTC	1 cut(s)	1841
EcoRII	CCWGG	7 cut(s)	532, 551, 688, 1179, 1337, 1588, 1759
EcoT14I	CCWWGG	5 cut(s)	630, 917, 1072, 1682, 1785
EcoT22I	ATGCAT	1 cut(s)	1324
EcoT38I	GRGCYC	2 cut(s)	1647, 1985
ErhI	CCWWGG	5 cut(s)	630, 917, 1072, 1682, 1785
Esp3I	CGTCTC	1 cut(s)	1355
FalI	AAGNNNNNCTT	4 cut(s)	1065, 1097, 1648, 1680
FaqI	GGGAC	2 cut(s)	49, 551
FauI	CCCGC	1 cut(s)	1979
FblI	GTMKAC	1 cut(s)	1825
Fnu4HI	GCNGC	2 cut(s)	1634, 1721
FokI	GGATG	6 cut(s)	431, 458, 584, 1196, 1757, 1934
FriOI	GRGCYC	2 cut(s)	1647, 1985
Fsp4HI	GCNGC	2 cut(s)	1634, 1721
FspBI	CTAG	2 cut(s)	416, 725
GluI	GCNGC	2 cut(s)	1634, 1721
GsaI	CCCAGC	1 cut(s)	75
GsuI	CTGGAG	4 cut(s)	348, 594, 711, 915
HaeIII	GGCC	9 cut(s)	282, 687, 845, 901, 1071, 1116, 1344, 1504, 1584
HapII	CCGG	3 cut(s)	16, 68, 279
HgaI	GACGC	1 cut(s)	51
Hin1I	GRCGYC	2 cut(s)	62, 96
HindIII	AAGCTT	2 cut(s)	785, 1377
HinfI	GANTC	5 cut(s)	185, 232, 1002, 1152, 1738
HpaII	CCGG	3 cut(s)	16, 68, 279
HphI	GGTGA	3 cut(s)	1565, 1714, 1977
Hpy166II	GTNNAC	6 cut(s)	25, 665, 779, 1093, 1826, 1928
Hpy188I	TCNGA	8 cut(s)	441, 979, 1024, 1540, 1628, 1669, 1847, 1861
Hpy188III	TCNNGA	9 cut(s)	255, 566, 1109, 1141, 1149, 1677, 1727, 1742, 1945
Hpy8I	GTNNAC	6 cut(s)	25, 665, 779, 1093, 1826, 1928
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	7 cut(s)	1419, 1525, 1633, 1650, 1674, 1831, 1951
HpyCH4III	ACNGT	3 cut(s)	375, 1018, 1198
HpyCH4IV	ACGT	2 cut(s)	96, 775
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 416, 1210, 1642, 1980
HpyF3I	CTNAG	5 cut(s)	236, 618, 829, 1575, 1734
HpySE526I	ACGT	2 cut(s)	96, 775
Hsp92I	GRCGYC	2 cut(s)	62, 96
LguI	GCTCTTC	4 cut(s)	220, 632, 1427, 1683
LmnI	GCTCC	3 cut(s)	1471, 1642, 1916
Lsp1109I	GCAGC	1 cut(s)	1620
LweI	GCATC	2 cut(s)	740, 1309
MaeI	CTAG	2 cut(s)	416, 725
MaeII	ACGT	2 cut(s)	96, 775
MaeIII	GTNAC	3 cut(s)	1478, 1553, 1610
MbiI	CCGCTC	1 cut(s)	1919
MflI	RGATCY	6 cut(s)	172, 331, 350, 1076, 1871, 1949
MhlI	GDGCHC	3 cut(s)	781, 1647, 1985
MlsI	TGGCCA	2 cut(s)	845, 1116
MluNI	TGGCCA	2 cut(s)	845, 1116
MlyI	GAGTC	2 cut(s)	1146, 1747
MmeI	TCCRAC	2 cut(s)	134, 1264
Mox20I	TGGCCA	2 cut(s)	845, 1116
Mph1103I	ATGCAT	1 cut(s)	1324
MroXI	GAANNNNTTC	3 cut(s)	392, 1062, 1841
MscI	TGGCCA	2 cut(s)	845, 1116
MseI	TTAA	5 cut(s)	108, 293, 1524, 1649, 1767
MslI	CAYNNNNRTG	5 cut(s)	839, 1142, 1278, 1317, 1476
Msp20I	TGGCCA	2 cut(s)	845, 1116
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	3 cut(s)	16, 68, 279
MspR9I	CCNGG	8 cut(s)	68, 534, 553, 690, 1181, 1339, 1590, 1761
Mva1269I	GAATGC	1 cut(s)	868
MvaI	CCWGG	7 cut(s)	534, 553, 690, 1181, 1339, 1590, 1761
MvnI	CGCG	1 cut(s)	1204
MwoI	GCNNNNNNNGC	5 cut(s)	68, 416, 1210, 1642, 1980
NciI	CCSGG	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	630
NlaIV	GGNNCC	5 cut(s)	174, 259, 352, 1343, 1873
NmeAIII	GCCGAG	2 cut(s)	26, 1126
NmuCI	GTSAC	3 cut(s)	1478, 1553, 1610
NsiI	ATGCAT	1 cut(s)	1324
NspI	RCATGY	1 cut(s)	1779
PagI	TCATGA	1 cut(s)	1726
PasI	CCCWGGG	1 cut(s)	552
PciI	ACATGT	1 cut(s)	1775
PciSI	GCTCTTC	4 cut(s)	220, 632, 1427, 1683
PctI	GAATGC	1 cut(s)	868
PdmI	GAANNNNTTC	3 cut(s)	392, 1062, 1841
PfeI	GAWTC	3 cut(s)	185, 232, 1002
PflMI	CCANNNNNTGG	2 cut(s)	1123, 1235
PfoI	TCCNGGA	1 cut(s)	1179
PinAI	ACCGGT	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	1635, 1722
PleI	GAGTC	2 cut(s)	1146, 1746
PmaCI	CACGTG	1 cut(s)	776
PmlI	CACGTG	1 cut(s)	776
PpsI	GAGTC	2 cut(s)	1146, 1746
Ppu21I	YACGTR	1 cut(s)	776
PscI	ACATGT	1 cut(s)	1775
PshAI	GACNNNNGTC	1 cut(s)	581
PsiI	TTATAA	1 cut(s)	791
Psp124BI	GAGCTC	1 cut(s)	1647
Psp6I	CCWGG	7 cut(s)	532, 551, 688, 1179, 1337, 1588, 1759
PspCI	CACGTG	1 cut(s)	776
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	7 cut(s)	532, 551, 688, 1179, 1337, 1588, 1759
PspN4I	GGNNCC	5 cut(s)	174, 259, 352, 1343, 1873
PspPI	GGNCC	4 cut(s)	257, 686, 1069, 1342
PsuI	RGATCY	6 cut(s)	172, 331, 350, 1076, 1871, 1949
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	5 cut(s)	14, 26, 377, 1227, 1927
RsaNI	GTAC	5 cut(s)	13, 25, 376, 1226, 1926
RseI	CAYNNNNRTG	5 cut(s)	839, 1142, 1278, 1317, 1476
SacI	GAGCTC	1 cut(s)	1647
SapI	GCTCTTC	4 cut(s)	220, 632, 1427, 1683
SaqAI	TTAA	5 cut(s)	108, 293, 1524, 1649, 1767
SatI	GCNGC	2 cut(s)	1634, 1721
Sau96I	GGNCC	4 cut(s)	257, 686, 1069, 1342
SchI	GAGTC	2 cut(s)	1146, 1747
ScrFI	CCNGG	8 cut(s)	68, 534, 553, 690, 1181, 1339, 1590, 1761
SduI	GDGCHC	3 cut(s)	781, 1647, 1985
SfaNI	GCATC	2 cut(s)	740, 1309
SfcI	CTRYAG	1 cut(s)	284
SinI	GGWCC	1 cut(s)	257
SmiMI	CAYNNNNRTG	5 cut(s)	839, 1142, 1278, 1317, 1476
SmlI	CTYRAG	2 cut(s)	1374, 1898
SmoI	CTYRAG	2 cut(s)	1374, 1898
SsiI	CCGC	8 cut(s)	35, 50, 137, 1485, 1720, 1850, 1919, 1972
SspMI	CTAG	2 cut(s)	416, 725
SstI	GAGCTC	1 cut(s)	1647
StyD4I	CCNGG	8 cut(s)	66, 532, 551, 688, 1179, 1337, 1588, 1759
StyI	CCWWGG	5 cut(s)	630, 917, 1072, 1682, 1785
TaaI	ACNGT	3 cut(s)	375, 1018, 1198
TaiI	ACGT	2 cut(s)	99, 778
TaqI	TCGA	2 cut(s)	1755, 1944
TatI	WGTACW	2 cut(s)	24, 375
TauI	GCSGC	1 cut(s)	1723
TfiI	GAWTC	3 cut(s)	185, 232, 1002
Tru1I	TTAA	5 cut(s)	108, 293, 1524, 1649, 1767
Tru9I	TTAA	5 cut(s)	108, 293, 1524, 1649, 1767
TscAI	CASTG	7 cut(s)	403, 469, 1002, 1564, 1704, 1738, 1839
TseFI	GTSAC	3 cut(s)	1478, 1553, 1610
TseI	GCWGC	1 cut(s)	1633
Tsp45I	GTSAC	3 cut(s)	1478, 1553, 1610
TspGWI	ACGGA	1 cut(s)	1337
TspRI	CASTG	7 cut(s)	403, 469, 1002, 1564, 1704, 1738, 1839
Van91I	CCANNNNNTGG	2 cut(s)	1123, 1235
VneI	GTGCAC	1 cut(s)	777
VpaK11BI	GGWCC	1 cut(s)	257
XagI	CCTNNNNNAGG	1 cut(s)	1301
XapI	RAATTY	7 cut(s)	289, 499, 656, 1119, 1288, 1798, 1841
XceI	RCATGY	1 cut(s)	1779
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1079, 1361
XmiI	GTMKAC	1 cut(s)	1825
XmnI	GAANNNNTTC	3 cut(s)	392, 1062, 1841
XspI	CTAG	2 cut(s)	416, 725
ZraI	GACGTC	1 cut(s)	97
Zsp2I	ATGCAT	1 cut(s)	1324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.