RLG00000023748

strubbelig-receptor family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
27754856 .. 27763140
8285 bp
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UTR
Exon/CDS
Intron
RLM00000023748

Sequence Viewer

Length: 522 bp
ATGGACAACGAAGATGCTCCTTTTCATTTTCTAGAGACATGGTTTCCATTATCAAGCCAAGGAAGGATCTTAGTTCCAATACCATTGCTGGTGAAATTCCATATGTCTTACCCCCCCAATGTGACTCATATGAATCTAAGCCACAATTTGTTATCTGGACCCATTGGCAATGTTTTTACCGGCCTACAGAAATTAACTATGGATTTGTCATGTAATAACTTTACTGGAGATCTTCCAAGTTCATTTGAATCCCTCACAATTCACTGGACTGTGAGTTTTCGTTTTGCTCTAGTCTACTTGCTATACTTTAGCGCGTACTTGCAGAATAACCAATTCACTGGATCAGTTGCATACCTAGCTGAACTTCCACTAATTGATCTGATTATCGAATGCAATTATTTCAGTGGTATCATCCCCAATCATTTTCAGTCCATCCCAAATTTATGGATCGGGGGAAATAGTCTTCATCTTCCAGGGCACAACCATCCACCCCCCTCTGGAAACGCAGGCAAGTGTCATTGA

Protein Analysis

174

Amino Acids

19.37

Weight (kDa)

6.0

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000664)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 294
AccII CGCG 1 cut(s) 314
AclWI GGATC 3 cut(s) 74, 349, 455
AcsI RAATTY 2 cut(s) 95, 439
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 497
AgsI TTSAA 1 cut(s) 248
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 3 cut(s) 74, 349, 455
AoxI GGCC 1 cut(s) 181
ApoI RAATTY 2 cut(s) 95, 439
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 455
BccI CCATC 2 cut(s) 440, 492
BciT130I CCWGG 1 cut(s) 474
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 3 cut(s) 32, 290, 356
BfmI CTRYAG 1 cut(s) 185
BglII AGATCT 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 474
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 4
BpiI GAAGAC 1 cut(s) 455
BpmI CTGGAG 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 58, 473
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 3 cut(s) 229, 269, 343
Bse3DI GCAATG 2 cut(s) 83, 175
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 2 cut(s) 58, 473
BseGI GGATG 3 cut(s) 411, 432, 484
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMI GCAATG 2 cut(s) 83, 175
BseNI ACTGG 3 cut(s) 229, 269, 343
BseSI GKGCMC 1 cut(s) 480
Bsh1236I CGCG 1 cut(s) 314
BshFI GGCC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 395
BsnI GGCC 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 480
Bsp143I GATC 5 cut(s) 66, 229, 341, 376, 447
BspANI GGCC 1 cut(s) 183
BspFNI CGCG 1 cut(s) 314
BspLI GGNNCC 1 cut(s) 160
BspPI GGATC 3 cut(s) 74, 349, 455
BsrDI GCAATG 2 cut(s) 83, 175
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 3 cut(s) 229, 269, 343
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 2 cut(s) 58, 473
BssMI GATC 5 cut(s) 66, 229, 341, 376, 447
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 2 cut(s) 70, 137
BstF5I GGATG 3 cut(s) 411, 432, 484
BstFNI CGCG 1 cut(s) 314
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 5 cut(s) 69, 232, 344, 379, 450
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 5 cut(s) 66, 229, 341, 376, 447
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNI CCWGG 1 cut(s) 474
BstSCI CCNGG 1 cut(s) 472
BstSFI CTRYAG 1 cut(s) 185
BstSLI GKGCMC 1 cut(s) 480
BstUI CGCG 1 cut(s) 314
BstV2I GAAGAC 1 cut(s) 455
BstX2I RGATCY 2 cut(s) 66, 229
BstXI CCANNNNNNTGG 2 cut(s) 338, 444
BstYI RGATCY 2 cut(s) 66, 229
BsuRI GGCC 1 cut(s) 183
BtsCI GGATG 3 cut(s) 411, 432, 484
BtsIMutI CAGTG 3 cut(s) 262, 336, 409
Cac8I GCNNGC 1 cut(s) 508
CfoI GCGC 1 cut(s) 314
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 316
CviAII CATG 2 cut(s) 39, 210
CviJI RGCY 4 cut(s) 57, 141, 183, 359
CviKI_1 RGCY 4 cut(s) 57, 141, 183, 359
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 2 cut(s) 70, 137
DpnI GATC 5 cut(s) 68, 231, 343, 378, 449
DpnII GATC 5 cut(s) 66, 229, 341, 376, 447
Eco130I CCWWGG 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 2 cut(s) 42, 213
FatI CATG 2 cut(s) 38, 209
FauNDI CATATG 2 cut(s) 102, 129
FblI GTMKAC 1 cut(s) 294
FokI GGATG 3 cut(s) 398, 419, 471
FspBI CTAG 3 cut(s) 32, 290, 356
GlaI GCGC 1 cut(s) 313
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 1 cut(s) 183
HapII CCGG 1 cut(s) 180
HhaI GCGC 1 cut(s) 314
Hin1II CATG 2 cut(s) 42, 213
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HinfI GANTC 3 cut(s) 124, 133, 248
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 1 cut(s) 381
Hpy188III TCNNGA 3 cut(s) 32, 156, 498
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4V TGCA 3 cut(s) 322, 350, 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 2 cut(s) 70, 137
Hsp92II CATG 2 cut(s) 42, 213
HspAI GCGC 1 cut(s) 312
Kzo9I GATC 5 cut(s) 66, 229, 341, 376, 447
LmnI GCTCC 1 cut(s) 22
LweI GCATC 1 cut(s) 4
MaeI CTAG 3 cut(s) 32, 290, 356
MaeIII GTNAC 1 cut(s) 121
MalI GATC 5 cut(s) 68, 231, 343, 378, 449
MboI GATC 5 cut(s) 66, 229, 341, 376, 447
MboII GAAGA 4 cut(s) 23, 224, 455, 461
MflI RGATCY 2 cut(s) 66, 229
MhlI GDGCHC 1 cut(s) 480
MluCI AATT 8 cut(s) 95, 145, 191, 258, 332, 372, 394, 439
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 2 cut(s) 263, 505
MseI TTAA 1 cut(s) 194
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 395
MvaI CCWGG 1 cut(s) 474
MvnI CGCG 1 cut(s) 314
MwoI GCNNNNNNNGC 1 cut(s) 356
NdeI CATATG 2 cut(s) 102, 129
NdeII GATC 5 cut(s) 66, 229, 341, 376, 447
NlaIII CATG 2 cut(s) 42, 213
NlaIV GGNNCC 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 121
PctI GAATGC 1 cut(s) 395
PfeI GAWTC 2 cut(s) 133, 248
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 158
PsuI RGATCY 2 cut(s) 66, 229
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SaqAI TTAA 1 cut(s) 194
Sau3AI GATC 5 cut(s) 66, 229, 341, 376, 447
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 474
SduI GDGCHC 1 cut(s) 480
SetI ASST 2 cut(s) 357, 361
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 185
SinI GGWCC 1 cut(s) 158
Sse9I AATT 8 cut(s) 95, 145, 191, 258, 332, 372, 394, 439
SspMI CTAG 3 cut(s) 32, 290, 356
StyD4I CCNGG 1 cut(s) 472
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 271
TaqI TCGA 1 cut(s) 387
TasI AATT 8 cut(s) 95, 145, 191, 258, 332, 372, 394, 439
TfiI GAWTC 2 cut(s) 133, 248
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 3 cut(s) 269, 343, 409
TseFI GTSAC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 4 cut(s) 14, 146, 231, 455
TspRI CASTG 3 cut(s) 269, 343, 409
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 2 cut(s) 95, 439
XbaI TCTAGA 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 3 cut(s) 32, 290, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.