FvH4_6g31481

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000735
Physical Location & Seq
Forward (+)
24598468 .. 24598930
463 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31481.t1

Sequence Viewer

Length: 408 bp
ATGGCCATGGCCAGTGACTACTGGAAAGTGGTAGGCGACGCTTTCTGCGACGTACTTGTCGGCTTCACTAAACCAGAGAACCAGCTTCTATACAACACCAACACGTTCTTGATGGAGTTTGAAGCGGTGATCAGACATGCGACCGCCGACGAGGCAGACCGACTCCTAGACGACGACGTCATCCCCCGCCAGATCCCCTGTCCGAAACGCTTCAACAACTGCAAGTGGCAAGTCCCACTGGAGGAGCGTAGCTTCATGGTGAAGAAAGTAATGTTGAAAGCTTCCGAGGCGGCACAAAGTCTCAGTTCTTATGCCGGTGGGAAGAGACTGCATATGAGGGTGAACATCGATATGTATGTGATTGATGATGATGACGATGTCGATGGTGGTGGCATGATTGTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.31

Weight (kDa)

4.68

Isoelectric Point (pI)

31.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 56, 176
AatII GACGTC 1 cut(s) 180
AciI CCGC 4 cut(s) 125, 144, 187, 290
AclWI GGATC 1 cut(s) 187
AcoI YGGCCR 2 cut(s) 3, 9
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 241
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 3 cut(s) 122, 214, 277
AluBI AGCT 3 cut(s) 85, 252, 281
AluI AGCT 3 cut(s) 85, 252, 281
Alw26I GTCTC 2 cut(s) 305, 319
AlwI GGATC 1 cut(s) 187
AoxI GGCC 2 cut(s) 3, 9
Asp700I GAANNNNTTC 1 cut(s) 209
AsuHPI GGTGA 3 cut(s) 139, 271, 352
BalI TGGCCA 2 cut(s) 5, 11
BccI CCATC 2 cut(s) 106, 377
BcgI CGANNNNNNTGC 1 cut(s) 382
BclI TGATCA 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 305, 319
BfaI CTAG 1 cut(s) 167
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 260
Bsa29I ATCGAT 1 cut(s) 348
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 6, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 3 cut(s) 12, 26, 243
BseCI ATCGAT 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 6, 285
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 316
BseNI ACTGG 3 cut(s) 12, 26, 243
BseRI GAGGAG 1 cut(s) 257
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 5, 11
BshVI ATCGAT 1 cut(s) 348
BsiEI CGRYCG 1 cut(s) 144
BsiSI CCGG 1 cut(s) 315
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 2 cut(s) 305, 319
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 2 cut(s) 5, 11
Bsp143I GATC 2 cut(s) 129, 192
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 4 cut(s) 125, 144, 187, 290
BspANI GGCC 2 cut(s) 5, 11
BspCNI CTCAG 1 cut(s) 315
BspDI ATCGAT 1 cut(s) 348
BspPI GGATC 1 cut(s) 187
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 3 cut(s) 12, 26, 243
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 6, 285
BssMI GATC 2 cut(s) 129, 192
BssNI GRCGYC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 6
Bst6I CTCTTC 1 cut(s) 317
BstACI GRCGYC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 302
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 2 cut(s) 132, 195
BstMAI GTCTC 2 cut(s) 305, 319
BstMBI GATC 2 cut(s) 129, 192
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 2 cut(s) 152, 287
BstNSI RCATGY 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
Bsu15I ATCGAT 1 cut(s) 348
BsuRI GGCC 2 cut(s) 5, 11
BsuTUI ATCGAT 1 cut(s) 348
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 19, 236
Cfr10I RCCGGY 1 cut(s) 314
ClaI ATCGAT 1 cut(s) 348
CseI GACGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 53
CviAII CATG 4 cut(s) 7, 137, 256, 394
CviJI RGCY 6 cut(s) 5, 11, 63, 85, 252, 281
CviKI_1 RGCY 6 cut(s) 5, 11, 63, 85, 252, 281
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 1 cut(s) 302
DpnI GATC 2 cut(s) 131, 194
DpnII GATC 2 cut(s) 129, 192
DrdI GACNNNNNNGTC 2 cut(s) 56, 176
DseDI GACNNNNNNGTC 2 cut(s) 56, 176
EaeI YGGCCR 2 cut(s) 3, 9
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 4 cut(s) 10, 140, 259, 397
FaqI GGGAC 1 cut(s) 218
FatI CATG 4 cut(s) 6, 136, 255, 393
FauI CCCGC 1 cut(s) 194
FauNDI CATATG 1 cut(s) 333
FbaI TGATCA 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 291
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 291
FspBI CTAG 1 cut(s) 167
GluI GCNGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 260
HaeIII GGCC 2 cut(s) 5, 11
HapII CCGG 1 cut(s) 315
HgaI GACGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 4 cut(s) 10, 140, 259, 397
HindIII AAGCTT 1 cut(s) 279
HinfI GANTC 1 cut(s) 162
HpaII CCGG 1 cut(s) 315
HphI GGTGA 3 cut(s) 139, 271, 352
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 3 cut(s) 134, 204, 286
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 1 cut(s) 343
Hpy99I CGWCG 5 cut(s) 41, 53, 152, 176, 179
HpyCH4IV ACGT 3 cut(s) 51, 104, 177
HpyCH4V TGCA 2 cut(s) 222, 331
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 287
HpyF3I CTNAG 1 cut(s) 302
HpySE526I ACGT 3 cut(s) 51, 104, 177
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 4 cut(s) 10, 140, 259, 397
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 2 cut(s) 129, 192
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 8 cut(s) 7, 25, 87, 95, 203, 211, 224, 328
MaeI CTAG 1 cut(s) 167
MaeII ACGT 3 cut(s) 51, 104, 177
MaeIII GTNAC 1 cut(s) 14
MalI GATC 2 cut(s) 131, 194
MboI GATC 2 cut(s) 129, 192
MboII GAAGA 2 cut(s) 274, 334
MflI RGATCY 1 cut(s) 192
MlsI TGGCCA 2 cut(s) 5, 11
MluNI TGGCCA 2 cut(s) 5, 11
MlyI GAGTC 1 cut(s) 156
MnlI CCTC 4 cut(s) 145, 235, 280, 330
Mox20I TGGCCA 2 cut(s) 5, 11
MroXI GAANNNNTTC 1 cut(s) 209
MscI TGGCCA 2 cut(s) 5, 11
MslI CAYNNNNRTG 1 cut(s) 350
Msp20I TGGCCA 2 cut(s) 5, 11
MspI CCGG 1 cut(s) 315
MwoI GCNNNNNNNGC 2 cut(s) 152, 287
NcoI CCATGG 1 cut(s) 6
NdeI CATATG 1 cut(s) 333
NdeII GATC 2 cut(s) 129, 192
NlaIII CATG 4 cut(s) 10, 140, 259, 397
NmuCI GTSAC 1 cut(s) 14
NspI RCATGY 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 209
PflFI GACNNNGTC 2 cut(s) 176, 377
PkrI GCNGC 1 cut(s) 292
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
PsuI RGATCY 1 cut(s) 192
PsyI GACNNNGTC 2 cut(s) 176, 377
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 350
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 2 cut(s) 129, 192
SchI GAGTC 1 cut(s) 156
SetI ASST 6 cut(s) 54, 87, 107, 180, 254, 283
SmiMI CAYNNNNRTG 1 cut(s) 350
SsiI CCGC 4 cut(s) 125, 144, 187, 290
SspMI CTAG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 6
TaiI ACGT 3 cut(s) 54, 107, 180
TaqI TCGA 3 cut(s) 348, 381, 402
TaqII GACCGA 1 cut(s) 174
TauI GCSGC 1 cut(s) 293
TscAI CASTG 2 cut(s) 19, 243
TseFI GTSAC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 244
TspRI CASTG 2 cut(s) 19, 243
Tth111I GACNNNGTC 2 cut(s) 176, 377
XceI RCATGY 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 1 cut(s) 167
ZraI GACGTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.