Rmu_sc0008383.1_g000007

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008383.1
OG0000735
Physical Location & Seq
Forward (+)
18684 .. 18986
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008383.1_g000007.1.cds

Sequence Viewer

Length: 303 bp
atggaagacatgatgggtgaggttatatttgagccggcgagtaaaatgtcgattgagaaattggagagggtgagaatagtggaagcatcaaccatgtgtgcgatctgtgcagaggagattgtggttggttccgaagaaattcatatgctatgttcacatttttaccatggcgattacattgtcaagttgttggagcagagcaagttttgcccacaatgtcaatatgttgtgcttgcagcttctaaggatgaaactggaataccactgatcaatagacatgagagagaaggtgttgacaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

100

Amino Acids

11.35

Weight (kDa)

4.77

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 138
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 29, 82
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 248
BccI CCATC 1 cut(s) 7
BclI TGATCA 1 cut(s) 267
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 130
BmsI GCATC 1 cut(s) 95
BpiI GAAGAC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 166
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 253
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 248
BsgI GTGCAG 1 cut(s) 129
BsiSI CCGG 1 cut(s) 35
Bsp143I GATC 2 cut(s) 102, 267
Bsp19I CCATGG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 2 cut(s) 102, 267
BssT1I CCWWGG 1 cut(s) 166
BstAPI GCANNNNNTGC 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 36, 234
BstDEI CTNAG 1 cut(s) 243
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 2 cut(s) 105, 270
BstMBI GATC 2 cut(s) 102, 267
BstMWI GCNNNNNNNGC 2 cut(s) 107, 207
BstV1I GCAGC 1 cut(s) 248
BstV2I GAAGAC 1 cut(s) 12
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 263
Cac8I GCNNGC 2 cut(s) 36, 234
Cfr10I RCCGGY 1 cut(s) 34
CviAII CATG 4 cut(s) 10, 94, 167, 278
CviJI RGCY 2 cut(s) 34, 239
CviKI_1 RGCY 2 cut(s) 34, 239
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 104, 269
DpnII GATC 2 cut(s) 102, 267
Eco130I CCWWGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 4 cut(s) 13, 97, 170, 281
FaiI YATR 9 cut(s) 11, 26, 95, 144, 146, 151, 168, 225, 279
FatI CATG 4 cut(s) 9, 93, 166, 277
FauNDI CATATG 1 cut(s) 144
FbaI TGATCA 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 1 cut(s) 237
GluI GCNGC 1 cut(s) 237
HapII CCGG 1 cut(s) 35
Hin1II CATG 4 cut(s) 13, 97, 170, 281
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HpaII CCGG 1 cut(s) 35
HphI GGTGA 2 cut(s) 29, 82
Hpy166II GTNNAC 2 cut(s) 155, 295
Hpy188I TCNGA 1 cut(s) 133
Hpy8I GTNNAC 2 cut(s) 155, 295
HpyAV CCTTC 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 110, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 207
HpyF3I CTNAG 1 cut(s) 243
Hsp92II CATG 4 cut(s) 13, 97, 170, 281
KroI GCCGGC 1 cut(s) 34
KroNI GCCGGC 1 cut(s) 36
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 2 cut(s) 102, 267
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 2 cut(s) 48, 240
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 1 cut(s) 95
MalI GATC 2 cut(s) 104, 269
MboI GATC 2 cut(s) 102, 267
MboII GAAGA 2 cut(s) 17, 146
MluCI AATT 3 cut(s) 59, 138, 298
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 3 cut(s) 13, 60, 106
MroNI GCCGGC 1 cut(s) 34
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 1 cut(s) 301
MspI CCGG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 107, 207
NaeI GCCGGC 1 cut(s) 36
NcoI CCATGG 1 cut(s) 166
NdeI CATATG 1 cut(s) 144
NdeII GATC 2 cut(s) 102, 267
NgoMIV GCCGGC 1 cut(s) 34
NlaIII CATG 4 cut(s) 13, 97, 170, 281
NlaIV GGNNCC 1 cut(s) 130
PdiI GCCGGC 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 138
PkrI GCNGC 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 130
SaqAI TTAA 1 cut(s) 301
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 2 cut(s) 102, 267
SetI ASST 3 cut(s) 24, 241, 292
SfaNI GCATC 1 cut(s) 95
Sse9I AATT 3 cut(s) 59, 138, 298
StyI CCWWGG 1 cut(s) 166
TaqI TCGA 1 cut(s) 50
TasI AATT 3 cut(s) 59, 138, 298
Tru1I TTAA 1 cut(s) 301
Tru9I TTAA 1 cut(s) 301
TscAI CASTG 1 cut(s) 270
TseI GCWGC 1 cut(s) 236
TspDTI ATGAA 2 cut(s) 131, 264
TspRI CASTG 1 cut(s) 270
XapI RAATTY 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.