Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000735

Physical Location & Seq

Genomic Coordinates Forward (+)

5370361 .. 5370855

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g06080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAGGACGACTTGAAACCCAAGTTGTGGTTGGACGTTAAGGCCAATGTTACGGTGATGGTGCTGCCGAGGATCTTAGAGGACGAAGAGGATTTGGAGAACCACTACAAAGTCATGCTTTTAGAAGATATTGATCAAATGGGGCAGAGCATCGACAGCATTGATTTTGAGGACAAACTTGAGATTGACCTAGACAAGACTGCCATGTCGCCGGCTGCTTCCAAAGCCGTCTCTCGCGTGCTTTCTGGCCTGATCAACGTCCCCTTGCGGACTCTTTTGTCCGCGGCCAATACAATCTTGTGTGAGGCCCTACGTCCTAGGGCAAGGGGTACCAGTCTTGTGCACATGGAGGCACTCATCAAAGTTGAAGTGGTTGAGGAGTCGGATGATGATGGTATGACCGTAGAGCCAGCGTTTGCACCTGCAACAAAATCTTCCATTGACAAGTTGGAGAGGGTGAGAGTGGAAACTTCATCGCCACCAGGGGTTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000153 GO:0000209 GO:0000835 GO:0000836 GO:0002020 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008593 GO:0009056 GO:0009057 GO:0009966 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010646 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0023051 GO:0023052 GO:0030163 GO:0030433 GO:0030968 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034620 GO:0034976 GO:0035264 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040007 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044322 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1902494 GO:1990234 GO:1990381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

165

Amino Acids

18.1

Weight (kDa)

4.49

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000735)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31481 FvH4_6g45550 FvH4_6g45551 FvH4_6g45560
malus_domestica	MD02G1237700.v1.1 MD02G1241100.v1.1 MD07G1074200.v1.1 MD07G1074300.v1.1 MD07G1077200.v1.1 MD09G1258700.v1.1
prunus_persica	Prupe.2G094100_v2.0.a1 Prupe.2G096300_v2.0.a1 Prupe.2G096400_v2.0.a1 Prupe.5G061200_v2.0.a1 Prupe.5G067900_v2.0.a1
pyrus_communis	pycom02g20840 pycom07g05830 pycom07g06070 pycom07g06080
rosa_chinensis	RchiOBHm_Chr1g0336601 RchiOBHm_Chr2g0163491 RchiOBHm_Chr5g0058471 RchiOBHm_Chr7g0236931
rosa_laevigata	RLG00000001047 RLG00000021406 RLG00000029344 RLG00000035224 RLG00000035225 RLG00000035226 RLG00000036678
rosa_multiflora	Rmu_co8414615.1_g000001 Rmu_sc0000367.1_g000124 Rmu_sc0000367.1_g000131 Rmu_sc0001969.1_g000007 Rmu_sc0004006.1_g000003 Rmu_sc0005576.1_g000003 Rmu_sc0008383.1_g000007 Rmu_sc0013124.1_g000008 Rmu_sc0024363.1_g000004 Rmu_ssc0000335.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004750 Rroxscaffold_1G00022030 Rroxscaffold_1G00022050 Rroxscaffold_1G00022060 Rroxscaffold_2G00087240 Rroxscaffold_2G00087270 Rroxscaffold_3G00224680
rosa_rugosa	Rorug04G0097000 Rorug05G0315100 Rorug05G0315200 Rorug05G0315400 Rorug05G0453100 Rorug07G0301000
rosa_samantha	Rh1DG154700 Rh2AG570200 Rh2BG582400 Rh2CG552200 Rh4CG163700 Rh5AG381500 Rh5BG393100 Rh5CG417300 Rh5DG408300 Rh5DG408400 Rh5DG541900 Rh7AG456000 Rh7BG427300 Rh7CG474800 Rh7DG443900
rosa_wichuraiana	Rw1G011960 Rw2G047210 Rw5G035950 Rw7G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	430
AasI	GACNNNNNNGTC	2 cut(s)	205, 277
Acc36I	ACCTGC	1 cut(s)	430
Acc65I	GGTACC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	329
AccB7I	CCANNNNNTGG	1 cut(s)	27
AccII	CGCG	2 cut(s)	237, 284
AciI	CCGC	3 cut(s)	268, 282, 284
AclWI	GGATC	1 cut(s)	80
AcoI	YGGCCR	1 cut(s)	285
AfaI	GTAC	1 cut(s)	331
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	2 cut(s)	16, 368
AjnI	CCWGG	1 cut(s)	481
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	235
Alw44I	GTGCAC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	80
AoxI	GGCC	4 cut(s)	42, 247, 285, 306
ApaLI	GTGCAC	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	64, 215
Asp718I	GGTACC	1 cut(s)	329
AspA2I	CCTAGG	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	307
AsuHPI	GGTGA	2 cut(s)	67, 469
AvrII	CCTAGG	1 cut(s)	317
BaeGI	GKGCMC	1 cut(s)	345
BanI	GGYRCC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	2 cut(s)	51, 202
BccI	CCATC	2 cut(s)	52, 386
BceAI	ACGGC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	483
BclI	TGATCA	2 cut(s)	133, 252
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	2 cut(s)	191, 318
BfuAI	ACCTGC	1 cut(s)	430
BisI	GCNGC	3 cut(s)	65, 216, 285
BlnI	CCTAGG	1 cut(s)	317
BlsI	GCNGC	3 cut(s)	66, 217, 286
Bme1390I	CCNGG	1 cut(s)	483
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	331
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	200
BsaBI	GATNNNNATC	1 cut(s)	132
BsaJI	CCNNGG	4 cut(s)	68, 282, 317, 482
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	333
Bse8I	GATNNNNATC	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	4 cut(s)	68, 282, 317, 482
BseGI	GGATG	1 cut(s)	391
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	392
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	2 cut(s)	51, 202
Bsh1236I	CGCG	2 cut(s)	237, 284
BshFI	GGCC	4 cut(s)	44, 249, 287, 308
BshNI	GGYRCC	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	235
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	4 cut(s)	44, 249, 287, 308
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	3 cut(s)	72, 133, 252
BspACI	CCGC	3 cut(s)	268, 282, 284
BspANI	GGCC	4 cut(s)	44, 249, 287, 308
BspFNI	CGCG	2 cut(s)	237, 284
BspLI	GGNNCC	1 cut(s)	331
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	333
BssAI	RCCGGY	1 cut(s)	211
BssECI	CCNNGG	4 cut(s)	68, 282, 317, 482
BssMI	GATC	3 cut(s)	72, 133, 252
BssT1I	CCWWGG	1 cut(s)	317
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	55, 403
Bst6I	CTCTTC	1 cut(s)	81
BstC8I	GCNNGC	3 cut(s)	213, 239, 411
BstDEI	CTNAG	1 cut(s)	76
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	2 cut(s)	237, 284
BstKTI	GATC	3 cut(s)	75, 136, 255
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	3 cut(s)	72, 133, 252
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 224
BstNI	CCWGG	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	481
BstSLI	GKGCMC	1 cut(s)	345
BstUI	CGCG	2 cut(s)	237, 284
BstV1I	GCAGC	2 cut(s)	51, 202
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BsuRI	GGCC	4 cut(s)	44, 249, 287, 308
BtgI	CCRYGG	1 cut(s)	282
BtgZI	GCGATG	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	391
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	3 cut(s)	213, 239, 411
Cfr10I	RCCGGY	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	307
Cfr42I	CCGCGG	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	3 cut(s)	115, 205, 346
CviJI	RGCY	7 cut(s)	44, 215, 227, 249, 287, 308, 409
CviKI_1	RGCY	7 cut(s)	44, 215, 227, 249, 287, 308, 409
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	1 cut(s)	76
DpnI	GATC	3 cut(s)	74, 135, 254
DpnII	GATC	3 cut(s)	72, 133, 252
DrdI	GACNNNNNNGTC	2 cut(s)	205, 277
DseDI	GACNNNNNNGTC	2 cut(s)	205, 277
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	317
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	3 cut(s)	118, 208, 349
FaiI	YATR	4 cut(s)	116, 206, 347, 398
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	3 cut(s)	114, 204, 345
FbaI	TGATCA	2 cut(s)	133, 252
Fnu4HI	GCNGC	3 cut(s)	65, 216, 285
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	3 cut(s)	65, 216, 285
FspBI	CTAG	2 cut(s)	191, 318
GluI	GCNGC	3 cut(s)	65, 216, 285
HaeIII	GGCC	4 cut(s)	44, 249, 287, 308
HapII	CCGG	1 cut(s)	212
Hin1II	CATG	3 cut(s)	118, 208, 349
HinfI	GANTC	2 cut(s)	271, 380
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	2 cut(s)	67, 469
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	1 cut(s)	385
Hpy8I	GTNNAC	1 cut(s)	343
HpyCH4III	ACNGT	2 cut(s)	55, 403
HpyCH4IV	ACGT	3 cut(s)	36, 258, 313
HpyCH4V	TGCA	3 cut(s)	343, 419, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 224
HpyF3I	CTNAG	1 cut(s)	76
HpySE526I	ACGT	3 cut(s)	36, 258, 313
Hsp92II	CATG	3 cut(s)	118, 208, 349
KpnI	GGTACC	1 cut(s)	333
KroI	GCCGGC	1 cut(s)	211
KroNI	GCCGGC	1 cut(s)	213
Ksp22I	TGATCA	2 cut(s)	133, 252
KspI	CCGCGG	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	72, 133, 252
LpnPI	CCDG	7 cut(s)	225, 231, 263, 346, 423, 435, 468
Lsp1109I	GCAGC	2 cut(s)	51, 202
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	2 cut(s)	191, 318
MaeII	ACGT	3 cut(s)	36, 258, 313
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	3 cut(s)	74, 135, 254
MboI	GATC	3 cut(s)	72, 133, 252
MboII	GAAGA	3 cut(s)	98, 137, 426
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	345
MlyI	GAGTC	2 cut(s)	265, 389
MmeI	TCCRAC	3 cut(s)	12, 363, 429
MnlI	CCTC	8 cut(s)	63, 73, 82, 163, 298, 343, 370, 447
MroNI	GCCGGC	1 cut(s)	211
MseI	TTAA	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	483
MvnI	CGCG	2 cut(s)	237, 284
MwoI	GCNNNNNNNGC	2 cut(s)	156, 224
NaeI	GCCGGC	1 cut(s)	213
NdeII	GATC	3 cut(s)	72, 133, 252
NgoMIV	GCCGGC	1 cut(s)	211
NlaIII	CATG	3 cut(s)	118, 208, 349
NlaIV	GGNNCC	1 cut(s)	331
NmeAIII	GCCGAG	1 cut(s)	93
PaqCI	CACCTGC	1 cut(s)	430
PdiI	GCCGGC	1 cut(s)	213
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	3 cut(s)	66, 217, 286
PleI	GAGTC	2 cut(s)	265, 388
PpsI	GAGTC	2 cut(s)	265, 388
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	72
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
SacII	CCGCGG	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	3 cut(s)	65, 216, 285
Sau3AI	GATC	3 cut(s)	72, 133, 252
Sau96I	GGNCC	1 cut(s)	307
SchI	GAGTC	2 cut(s)	265, 389
ScrFI	CCNGG	1 cut(s)	483
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	5 cut(s)	39, 192, 261, 316, 424
SfaNI	GCATC	1 cut(s)	159
Sfr303I	CCGCGG	1 cut(s)	285
SgrBI	CCGCGG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SsiI	CCGC	3 cut(s)	268, 282, 284
SspMI	CTAG	2 cut(s)	191, 318
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	55, 403
TaiI	ACGT	3 cut(s)	39, 261, 316
TaqI	TCGA	1 cut(s)	153
TauI	GCSGC	1 cut(s)	287
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseI	GCWGC	2 cut(s)	64, 215
TspDTI	ATGAA	1 cut(s)	462
Van91I	CCANNNNNTGG	1 cut(s)	27
VneI	GTGCAC	1 cut(s)	341
XcmI	CCANNNNNNNNNTGG	2 cut(s)	28, 445
XmaJI	CCTAGG	1 cut(s)	317
XspI	CTAG	2 cut(s)	191, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.