Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004006.1

Orthogroup ID

OG0000735

Physical Location & Seq

Genomic Coordinates Reverse (-)

13635 .. 14432

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004006.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atggatcaggaaattgagaattctagcactgattgctggttggaaaggattgacgattctaaaatcgagttgggtggcaccaagttggtgatggagatcgaagccacaattacatgtcccagcggatatccgacggaagaagaagaagatgatgaggactactccgatatcaatctcgagttgggtggcaccaagttggtgatggagatcgaagccacaattacatgtcccagcggatatccgacggaagaagaagatgatgaggactactccgatatcaatagaattctagcacaagacagcaacagttacgagggcacactcgaacttaacttgttgatggaaaacaacagtggaactgcctcgactcgatttatgagggaagaaatatctaagaagctcttcgacttgaatgttccctttagggatcatgaatccatagcaggcaaaatattgaacgatgtctttgcggtgacaagagatcctagtcgtaaagccgacggcaagatttttcatatgagggctgttatccatgtttttggggaagaattgggagatgaggatatggaaattgagccttactttgtgcctgcaagtaaatcggcaatggagaagttggagaaggcgatcgttgtccaagtctcgacaatgtgttcggtatgtagggaggacatgatggctggttccgaagcaactcggatgccgtgtttgcatctttaccatgagagctgcattgtagaatggttggggaagagcaagtactgcccactgtgtcgatattccatgccaagtgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

265

Amino Acids

29.95

Weight (kDa)

4.33

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000735)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31481 FvH4_6g45550 FvH4_6g45551 FvH4_6g45560
malus_domestica	MD02G1237700.v1.1 MD02G1241100.v1.1 MD07G1074200.v1.1 MD07G1074300.v1.1 MD07G1077200.v1.1 MD09G1258700.v1.1
prunus_persica	Prupe.2G094100_v2.0.a1 Prupe.2G096300_v2.0.a1 Prupe.2G096400_v2.0.a1 Prupe.5G061200_v2.0.a1 Prupe.5G067900_v2.0.a1
pyrus_communis	pycom02g20840 pycom07g05830 pycom07g06070 pycom07g06080
rosa_chinensis	RchiOBHm_Chr1g0336601 RchiOBHm_Chr2g0163491 RchiOBHm_Chr5g0058471 RchiOBHm_Chr7g0236931
rosa_laevigata	RLG00000001047 RLG00000021406 RLG00000029344 RLG00000035224 RLG00000035225 RLG00000035226 RLG00000036678
rosa_multiflora	Rmu_co8414615.1_g000001 Rmu_sc0000367.1_g000124 Rmu_sc0000367.1_g000131 Rmu_sc0001969.1_g000007 Rmu_sc0004006.1_g000003 Rmu_sc0005576.1_g000003 Rmu_sc0008383.1_g000007 Rmu_sc0013124.1_g000008 Rmu_sc0024363.1_g000004 Rmu_ssc0000335.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004750 Rroxscaffold_1G00022030 Rroxscaffold_1G00022050 Rroxscaffold_1G00022060 Rroxscaffold_2G00087240 Rroxscaffold_2G00087270 Rroxscaffold_3G00224680
rosa_rugosa	Rorug04G0097000 Rorug05G0315100 Rorug05G0315200 Rorug05G0315400 Rorug05G0453100 Rorug07G0301000
rosa_samantha	Rh1DG154700 Rh2AG570200 Rh2BG582400 Rh2CG552200 Rh4CG163700 Rh5AG381500 Rh5BG393100 Rh5CG417300 Rh5DG408300 Rh5DG408400 Rh5DG541900 Rh7AG456000 Rh7BG427300 Rh7CG474800 Rh7DG443900
rosa_wichuraiana	Rw1G011960 Rw2G047210 Rw5G035950 Rw7G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	77, 188
AciI	CCGC	3 cut(s)	123, 234, 470
AclWI	GGATC	3 cut(s)	12, 435, 476
AcsI	RAATTY	2 cut(s)	19, 285
AfaI	GTAC	1 cut(s)	761
AflIII	ACRYGT	2 cut(s)	113, 224
AgsI	TTSAA	2 cut(s)	412, 457
AluBI	AGCT	2 cut(s)	400, 729
AluI	AGCT	2 cut(s)	400, 729
Alw26I	GTCTC	1 cut(s)	646
AlwI	GGATC	3 cut(s)	12, 435, 476
Ama87I	CYCGRG	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	729
ApoI	RAATTY	2 cut(s)	19, 285
ArsI	GACNNNNNNTTYG	2 cut(s)	637, 669
Asp700I	GAANNNNTTC	1 cut(s)	401
AsuHPI	GGTGA	3 cut(s)	100, 211, 484
AvaI	CYCGRG	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	320
BanI	GGYRCC	2 cut(s)	77, 188
BarI	GAAGNNNNNNTAC	2 cut(s)	743, 775
BbvI	GCAGC	1 cut(s)	716
BccI	CCATC	4 cut(s)	85, 196, 334, 670
BceAI	ACGGC	2 cut(s)	517, 688
BcgI	CGANNNNNNTGC	4 cut(s)	449, 483, 582, 616
BcoDI	GTCTC	1 cut(s)	646
BfaI	CTAG	3 cut(s)	24, 290, 486
BisI	GCNGC	1 cut(s)	730
BlsI	GCNGC	1 cut(s)	731
BmcAI	AGTACT	1 cut(s)	761
BmeT110I	CYCGRG	1 cut(s)	176
BmiI	GGNNCC	3 cut(s)	79, 190, 685
BmsI	GCATC	2 cut(s)	690, 721
BplI	GAGNNNNNCTC	4 cut(s)	146, 178, 254, 286
BsaBI	GATNNNNATC	3 cut(s)	95, 171, 206
Bse3DI	GCAATG	1 cut(s)	612
Bse8I	GATNNNNATC	3 cut(s)	95, 171, 206
BseGI	GGATG	1 cut(s)	705
BseJI	GATNNNNATC	3 cut(s)	95, 171, 206
BseMI	GCAATG	1 cut(s)	612
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	716
BseYI	CCCAGC	2 cut(s)	119, 230
Bsh1285I	CGRYCG	1 cut(s)	630
BshNI	GGYRCC	2 cut(s)	77, 188
BsiEI	CGRYCG	1 cut(s)	630
BsiHKCI	CYCGRG	1 cut(s)	176
BslFI	GGGAC	2 cut(s)	102, 213
BsmAI	GTCTC	1 cut(s)	646
BsmFI	GGGAC	2 cut(s)	102, 213
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	6 cut(s)	4, 96, 207, 427, 481, 627
BspACI	CCGC	3 cut(s)	123, 234, 470
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	3 cut(s)	79, 190, 685
BspPI	GGATC	3 cut(s)	12, 435, 476
BspQI	GCTCTTC	2 cut(s)	407, 746
BspT107I	GGYRCC	2 cut(s)	77, 188
BsrDI	GCAATG	1 cut(s)	612
BssMI	GATC	6 cut(s)	4, 96, 207, 427, 481, 627
Bst4CI	ACNGT	3 cut(s)	308, 353, 771
Bst6I	CTCTTC	2 cut(s)	407, 746
BstAPI	GCANNNNNTGC	2 cut(s)	33, 762
BstC8I	GCNNGC	2 cut(s)	445, 591
BstDEI	CTNAG	1 cut(s)	393
BstF5I	GGATG	1 cut(s)	705
BstKTI	GATC	6 cut(s)	7, 99, 210, 430, 484, 630
BstMAI	GTCTC	1 cut(s)	646
BstMBI	GATC	6 cut(s)	4, 96, 207, 427, 481, 627
BstMCI	CGRYCG	1 cut(s)	630
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 709, 762
BstNSI	RCATGY	2 cut(s)	117, 228
BstSLI	GKGCMC	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	716
BstX2I	RGATCY	1 cut(s)	481
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	481
BtsCI	GGATG	1 cut(s)	705
BtsIMutI	CAGTG	3 cut(s)	27, 358, 767
Cac8I	GCNNGC	2 cut(s)	445, 591
CciI	TCATGA	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	760
CviAII	CATG	7 cut(s)	114, 225, 431, 533, 673, 722, 784
CviJI	RGCY	8 cut(s)	104, 215, 400, 497, 524, 577, 680, 729
CviKI_1	RGCY	8 cut(s)	104, 215, 400, 497, 524, 577, 680, 729
CviQI	GTAC	1 cut(s)	760
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	6 cut(s)	6, 98, 209, 429, 483, 629
DpnII	GATC	6 cut(s)	4, 96, 207, 427, 481, 627
Eam1104I	CTCTTC	2 cut(s)	407, 746
EarI	CTCTTC	2 cut(s)	407, 746
Eco32I	GATATC	4 cut(s)	128, 169, 239, 277
Eco88I	CYCGRG	1 cut(s)	176
EcoRI	GAATTC	2 cut(s)	19, 285
EcoRV	GATATC	4 cut(s)	128, 169, 239, 277
FaeI	CATG	7 cut(s)	117, 228, 434, 536, 676, 725, 787
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	2 cut(s)	102, 213
FatI	CATG	7 cut(s)	113, 224, 430, 532, 672, 721, 783
FauNDI	CATATG	1 cut(s)	516
Fnu4HI	GCNGC	1 cut(s)	730
FokI	GGATG	1 cut(s)	712
Fsp4HI	GCNGC	1 cut(s)	730
FspBI	CTAG	3 cut(s)	24, 290, 486
GluI	GCNGC	1 cut(s)	730
GsaI	CCCAGC	2 cut(s)	123, 234
Hin1II	CATG	7 cut(s)	117, 228, 434, 536, 676, 725, 787
HinfI	GANTC	3 cut(s)	56, 367, 434
HphI	GGTGA	3 cut(s)	100, 211, 484
Hpy188I	TCNGA	6 cut(s)	132, 166, 243, 274, 688, 699
Hpy188III	TCNNGA	4 cut(s)	8, 176, 431, 643
Hpy99I	CGWCG	3 cut(s)	136, 247, 503
HpyAV	CCTTC	1 cut(s)	616
HpyCH4III	ACNGT	3 cut(s)	308, 353, 771
HpyCH4V	TGCA	3 cut(s)	593, 712, 732
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 709, 762
HpyF3I	CTNAG	1 cut(s)	393
Hsp92II	CATG	7 cut(s)	117, 228, 434, 536, 676, 725, 787
Kzo9I	GATC	6 cut(s)	4, 96, 207, 427, 481, 627
LguI	GCTCTTC	2 cut(s)	407, 746
LpnPI	CCDG	6 cut(s)	22, 133, 244, 429, 603, 666
Lsp1109I	GCAGC	1 cut(s)	716
LweI	GCATC	2 cut(s)	690, 721
MaeI	CTAG	3 cut(s)	24, 290, 486
MaeIII	GTNAC	2 cut(s)	308, 472
MalI	GATC	6 cut(s)	6, 98, 209, 429, 483, 629
MboI	GATC	6 cut(s)	4, 96, 207, 427, 481, 627
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	7 cut(s)	12, 19, 108, 219, 285, 548, 570
MlyI	GAGTC	1 cut(s)	361
MmeI	TCCRAC	4 cut(s)	21, 155, 266, 597
MnlI	CCTC	8 cut(s)	148, 256, 307, 372, 373, 513, 553, 661
MroXI	GAANNNNTTC	1 cut(s)	401
MseI	TTAA	2 cut(s)	330, 796
MspA1I	CMGCKG	2 cut(s)	123, 234
MwoI	GCNNNNNNNGC	3 cut(s)	33, 709, 762
NdeI	CATATG	1 cut(s)	516
NdeII	GATC	6 cut(s)	4, 96, 207, 427, 481, 627
NlaIII	CATG	7 cut(s)	117, 228, 434, 536, 676, 725, 787
NlaIV	GGNNCC	3 cut(s)	79, 190, 685
NmuCI	GTSAC	1 cut(s)	472
NspI	RCATGY	2 cut(s)	117, 228
PaeR7I	CTCGAG	1 cut(s)	176
PagI	TCATGA	1 cut(s)	430
PciI	ACATGT	2 cut(s)	113, 224
PciSI	GCTCTTC	2 cut(s)	407, 746
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	56, 434
PkrI	GCNGC	1 cut(s)	731
Ple19I	CGATCG	1 cut(s)	630
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PscI	ACATGT	2 cut(s)	113, 224
PspFI	CCCAGC	2 cut(s)	119, 230
PspN4I	GGNNCC	3 cut(s)	79, 190, 685
PsuI	RGATCY	1 cut(s)	481
PvuI	CGATCG	1 cut(s)	630
RsaI	GTAC	1 cut(s)	761
RsaNI	GTAC	1 cut(s)	760
SapI	GCTCTTC	2 cut(s)	407, 746
SaqAI	TTAA	2 cut(s)	330, 796
SatI	GCNGC	1 cut(s)	730
Sau3AI	GATC	6 cut(s)	4, 96, 207, 427, 481, 627
ScaI	AGTACT	1 cut(s)	761
SchI	GAGTC	1 cut(s)	361
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	2 cut(s)	402, 731
SfaNI	GCATC	2 cut(s)	690, 721
Sfr274I	CTCGAG	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	7 cut(s)	12, 19, 108, 219, 285, 548, 570
SsiI	CCGC	3 cut(s)	123, 234, 470
SspI	AATATT	1 cut(s)	453
SspMI	CTAG	3 cut(s)	24, 290, 486
TaaI	ACNGT	3 cut(s)	308, 353, 771
TasI	AATT	7 cut(s)	12, 19, 108, 219, 285, 548, 570
TatI	WGTACW	1 cut(s)	759
TfiI	GAWTC	2 cut(s)	56, 434
Tru1I	TTAA	2 cut(s)	330, 796
Tru9I	TTAA	2 cut(s)	330, 796
TscAI	CASTG	3 cut(s)	34, 358, 774
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	1 cut(s)	729
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	2 cut(s)	447, 503
TspGWI	ACGGA	2 cut(s)	149, 260
TspRI	CASTG	3 cut(s)	34, 358, 774
XapI	RAATTY	2 cut(s)	19, 285
XceI	RCATGY	2 cut(s)	117, 228
XcmI	CCANNNNNNNNNTGG	2 cut(s)	88, 199
XhoI	CTCGAG	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	3 cut(s)	24, 290, 486
ZrmI	AGTACT	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.