Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000735

Physical Location & Seq

Genomic Coordinates Forward (+)

9352114 .. 9352809

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00087270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCCATGGCCATCAGTGACTACTGGGAAGTGGTGGGCGACACTTTCTGCGACATACTTGTCGCCTTCATGGAACCAGAAAATGAGTTTCTATGCAACAGCACCAAATTCTTGATGCAATTTGAGGTGGTGATCAGACGTGTCACCTCCGATGAGGCGGACCGGCTCCTAGACTACGACGTCATCCCCCGTGCCATCTGGAAGACCACCTCAATCGAACTTGACGACTCTAACTCATCATCCATGAATAGAGCTCTATCTGAAACACTTCGGCAGCTGCAAGTCCCACTGGAGGAGCGTAGCTCCATTGTGGAGAAAGTATTGTTCAAAGCCTTCGAGGTGGCACAGAAACCTAGTCCTTACGCTGGTGGGAAGAGACTTCGTATGCAGGTGAACATCGATATGTATGTGATTGATGACGATGTTGATGGGGACGCAAATGATGGTGGTGGTGGTATTATTGGTGATTATTATGAGCCTAGGTTTATGCCGGCCAGTAAATTGTCGATTGAGAAACTGGAGAGGACGAGTGTCCAAGTGCCATCAACAGTGTGTTCGGTTTGTATGGAGGAGATTAGGGTTGGTTTCGAAGCAACTAAAATGCCTTGTTCACATCTTTATCATGAGTGCTGCATTGTAGAGTGGCTGCAGAAAAGTGGGGTTTGCCCTTTGTGTAAGTTCCGCATGCCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

231

Amino Acids

26.21

Weight (kDa)

4.66

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	184 - 226	1.1e-11	Ring finger domain
zf-C3HC4_2	PF13923	185 - 225	5.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	185 - 212	6.7e-07	RING-like zinc finger
zf-C3HC4	PF00097	185 - 225	9.5e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	197 - 226	7.7e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000735)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31481 FvH4_6g45550 FvH4_6g45551 FvH4_6g45560
malus_domestica	MD02G1237700.v1.1 MD02G1241100.v1.1 MD07G1074200.v1.1 MD07G1074300.v1.1 MD07G1077200.v1.1 MD09G1258700.v1.1
prunus_persica	Prupe.2G094100_v2.0.a1 Prupe.2G096300_v2.0.a1 Prupe.2G096400_v2.0.a1 Prupe.5G061200_v2.0.a1 Prupe.5G067900_v2.0.a1
pyrus_communis	pycom02g20840 pycom07g05830 pycom07g06070 pycom07g06080
rosa_chinensis	RchiOBHm_Chr1g0336601 RchiOBHm_Chr2g0163491 RchiOBHm_Chr5g0058471 RchiOBHm_Chr7g0236931
rosa_laevigata	RLG00000001047 RLG00000021406 RLG00000029344 RLG00000035224 RLG00000035225 RLG00000035226 RLG00000036678
rosa_multiflora	Rmu_co8414615.1_g000001 Rmu_sc0000367.1_g000124 Rmu_sc0000367.1_g000131 Rmu_sc0001969.1_g000007 Rmu_sc0004006.1_g000003 Rmu_sc0005576.1_g000003 Rmu_sc0008383.1_g000007 Rmu_sc0013124.1_g000008 Rmu_sc0024363.1_g000004 Rmu_ssc0000335.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004750 Rroxscaffold_1G00022030 Rroxscaffold_1G00022050 Rroxscaffold_1G00022060 Rroxscaffold_2G00087240 Rroxscaffold_2G00087270 Rroxscaffold_3G00224680
rosa_rugosa	Rorug04G0097000 Rorug05G0315100 Rorug05G0315200 Rorug05G0315400 Rorug05G0453100 Rorug07G0301000
rosa_samantha	Rh1DG154700 Rh2AG570200 Rh2BG582400 Rh2CG552200 Rh4CG163700 Rh5AG381500 Rh5BG393100 Rh5CG417300 Rh5DG408300 Rh5DG408400 Rh5DG541900 Rh7AG456000 Rh7BG427300 Rh7CG474800 Rh7DG443900
rosa_wichuraiana	Rw1G011960 Rw2G047210 Rw5G035950 Rw7G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	379
AasI	GACNNNNNNGTC	2 cut(s)	59, 179
AatII	GACGTC	1 cut(s)	183
Acc36I	ACCTGC	1 cut(s)	379
AciI	CCGC	2 cut(s)	158, 682
AcoI	YGGCCR	3 cut(s)	3, 9, 492
AcsI	RAATTY	1 cut(s)	107
AcyI	GRCGYC	1 cut(s)	180
AfiI	CCNNNNNNNGG	2 cut(s)	292, 365
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	328
AjiI	CACGTC	1 cut(s)	140
AluBI	AGCT	3 cut(s)	254, 277, 303
AluI	AGCT	3 cut(s)	254, 277, 303
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	370
AoxI	GGCC	3 cut(s)	3, 9, 492
ApeKI	GCWGC	4 cut(s)	274, 277, 630, 646
ApoI	RAATTY	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	267
AspA2I	CCTAGG	1 cut(s)	479
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	4 cut(s)	136, 142, 403, 476
AsuII	TTCGAA	1 cut(s)	588
AvaII	GGWCC	1 cut(s)	160
AvrII	CCTAGG	1 cut(s)	479
BalI	TGGCCA	2 cut(s)	5, 11
BanII	GRGCYC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	4 cut(s)	264, 286, 617, 633
BccI	CCATC	5 cut(s)	20, 203, 422, 437, 550
BclI	TGATCA	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	3 cut(s)	170, 354, 480
BfmI	CTRYAG	1 cut(s)	647
BfuAI	ACCTGC	1 cut(s)	379
BisI	GCNGC	4 cut(s)	275, 278, 631, 647
BlnI	CCTAGG	1 cut(s)	479
BlsI	GCNGC	4 cut(s)	276, 279, 632, 648
Bme18I	GGWCC	1 cut(s)	160
BmgBI	CACGTC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	75, 167
BmrI	ACTGGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	105
BmuI	ACTGGG	1 cut(s)	34
BoxI	GACNNNNGTC	1 cut(s)	530
BpiI	GAAGAC	1 cut(s)	209
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpmI	CTGGAG	2 cut(s)	311, 539
Bpu14I	TTCGAA	1 cut(s)	588
Bsa29I	ATCGAT	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	6, 479
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 365
Bse118I	RCCGGY	2 cut(s)	162, 490
Bse1I	ACTGG	4 cut(s)	29, 294, 495, 522
BseCI	ATCGAT	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	6, 479
BseGI	GGATG	2 cut(s)	183, 239
BseLI	CCNNNNNNNGG	2 cut(s)	292, 365
BseNI	ACTGG	4 cut(s)	29, 294, 495, 522
BseRI	GAGGAG	2 cut(s)	308, 584
BseXI	GCAGC	4 cut(s)	264, 286, 617, 633
BshFI	GGCC	3 cut(s)	5, 11, 494
BshVI	ATCGAT	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	256
BsiSI	CCGG	2 cut(s)	163, 491
BslFI	GGGAC	2 cut(s)	269, 446
BslI	CCNNNNNNNGG	2 cut(s)	292, 365
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	2 cut(s)	269, 446
BsnI	GGCC	3 cut(s)	5, 11, 494
Bsp119I	TTCGAA	1 cut(s)	588
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	132
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	2 cut(s)	158, 682
BspANI	GGCC	3 cut(s)	5, 11, 494
BspDI	ATCGAT	1 cut(s)	399
BspHI	TCATGA	1 cut(s)	622
BspLI	GGNNCC	2 cut(s)	75, 167
BspMAI	CTGCAG	1 cut(s)	651
BspMI	ACCTGC	1 cut(s)	379
BspT104I	TTCGAA	1 cut(s)	588
BsrFI	RCCGGY	2 cut(s)	162, 490
BsrI	ACTGG	4 cut(s)	29, 294, 495, 522
BssAI	RCCGGY	2 cut(s)	162, 490
BssECI	CCNNGG	2 cut(s)	6, 479
BssMI	GATC	1 cut(s)	132
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	2 cut(s)	6, 479
Bst4CI	ACNGT	1 cut(s)	550
Bst6I	CTCTTC	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	588
BstC8I	GCNNGC	2 cut(s)	492, 686
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	183, 239
BstKTI	GATC	1 cut(s)	135
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	688
BstPAI	GACNNNNGTC	1 cut(s)	530
BstSFI	CTRYAG	1 cut(s)	647
BstV1I	GCAGC	4 cut(s)	264, 286, 617, 633
BstV2I	GAAGAC	1 cut(s)	209
Bsu15I	ATCGAT	1 cut(s)	399
BsuRI	GGCC	3 cut(s)	5, 11, 494
BsuTUI	ATCGAT	1 cut(s)	399
BtgI	CCRYGG	1 cut(s)	6
BtrI	CACGTC	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	183, 239
BtsIMutI	CAGTG	3 cut(s)	22, 287, 555
BveI	ACCTGC	1 cut(s)	379
Cac8I	GCNNGC	2 cut(s)	492, 686
CciI	TCATGA	1 cut(s)	622
Cfr10I	RCCGGY	2 cut(s)	162, 490
Cfr13I	GGNCC	1 cut(s)	160
ClaI	ATCGAT	1 cut(s)	399
CpoI	CGGWCCG	1 cut(s)	160
CseI	GACGC	1 cut(s)	443
CspI	CGGWCCG	1 cut(s)	160
CviAII	CATG	5 cut(s)	7, 70, 244, 623, 685
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
DrdI	GACNNNNNNGTC	2 cut(s)	59, 179
DseDI	GACNNNNNNGTC	2 cut(s)	59, 179
EaeI	YGGCCR	3 cut(s)	3, 9, 492
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
EciI	GGCGGA	1 cut(s)	173
Ecl136II	GAGCTC	1 cut(s)	254
Eco130I	CCWWGG	2 cut(s)	6, 479
Eco24I	GRGCYC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	254
EcoT14I	CCWWGG	2 cut(s)	6, 479
EcoT38I	GRGCYC	1 cut(s)	256
ErhI	CCWWGG	2 cut(s)	6, 479
FaeI	CATG	5 cut(s)	10, 73, 247, 626, 688
FaqI	GGGAC	2 cut(s)	269, 446
FatI	CATG	5 cut(s)	6, 69, 243, 622, 684
FbaI	TGATCA	1 cut(s)	132
Fnu4HI	GCNGC	4 cut(s)	275, 278, 631, 647
FokI	GGATG	2 cut(s)	170, 226
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	4 cut(s)	275, 278, 631, 647
FspBI	CTAG	3 cut(s)	170, 354, 480
GluI	GCNGC	4 cut(s)	275, 278, 631, 647
GsuI	CTGGAG	2 cut(s)	311, 539
HaeIII	GGCC	3 cut(s)	5, 11, 494
HapII	CCGG	2 cut(s)	163, 491
HgaI	GACGC	1 cut(s)	443
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	5 cut(s)	10, 73, 247, 626, 688
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	2 cut(s)	163, 491
HphI	GGTGA	4 cut(s)	136, 142, 403, 476
Hpy166II	GTNNAC	2 cut(s)	394, 611
Hpy188I	TCNGA	3 cut(s)	137, 151, 262
Hpy188III	TCNNGA	3 cut(s)	112, 199, 623
Hpy8I	GTNNAC	2 cut(s)	394, 611
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	76, 343
HpyCH4III	ACNGT	1 cut(s)	550
HpyCH4IV	ACGT	2 cut(s)	139, 180
HpyCH4V	TGCA	6 cut(s)	96, 118, 280, 388, 633, 649
HpySE526I	ACGT	2 cut(s)	139, 180
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	5 cut(s)	10, 73, 247, 626, 688
KroI	GCCGGC	1 cut(s)	490
KroNI	GCCGGC	1 cut(s)	492
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	3 cut(s)	171, 295, 308
Lsp1109I	GCAGC	4 cut(s)	264, 286, 617, 633
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	3 cut(s)	170, 354, 480
MaeII	ACGT	2 cut(s)	139, 180
MaeIII	GTNAC	2 cut(s)	17, 142
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	2 cut(s)	214, 385
MhlI	GDGCHC	1 cut(s)	256
MlsI	TGGCCA	2 cut(s)	5, 11
MluCI	AATT	4 cut(s)	107, 119, 500, 691
MluNI	TGGCCA	2 cut(s)	5, 11
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	8 cut(s)	118, 148, 157, 220, 286, 331, 516, 562
Mox20I	TGGCCA	2 cut(s)	5, 11
MroNI	GCCGGC	1 cut(s)	490
MroXI	GAANNNNTTC	1 cut(s)	267
MscI	TGGCCA	2 cut(s)	5, 11
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	2 cut(s)	5, 11
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	2 cut(s)	163, 491
NaeI	GCCGGC	1 cut(s)	492
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	132
NgoMIV	GCCGGC	1 cut(s)	490
NlaIII	CATG	5 cut(s)	10, 73, 247, 626, 688
NlaIV	GGNNCC	2 cut(s)	75, 167
NmuCI	GTSAC	2 cut(s)	17, 142
NspI	RCATGY	1 cut(s)	688
NspV	TTCGAA	1 cut(s)	588
PaeI	GCATGC	1 cut(s)	688
PagI	TCATGA	1 cut(s)	622
PaqCI	CACCTGC	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdiI	GCCGGC	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	267
PkrI	GCNGC	4 cut(s)	276, 279, 632, 648
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PshAI	GACNNNNGTC	1 cut(s)	530
Psp124BI	GAGCTC	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	75, 167
PspPI	GGNCC	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	651
PvuII	CAGCTG	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	401
Rsr2I	CGGWCCG	1 cut(s)	160
RsrII	CGGWCCG	1 cut(s)	160
SacI	GAGCTC	1 cut(s)	256
SatI	GCNGC	4 cut(s)	275, 278, 631, 647
Sau3AI	GATC	1 cut(s)	132
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	256
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	647
SfuI	TTCGAA	1 cut(s)	588
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	401
SphI	GCATGC	1 cut(s)	688
Sse9I	AATT	4 cut(s)	107, 119, 500, 691
SsiI	CCGC	2 cut(s)	158, 682
SspMI	CTAG	3 cut(s)	170, 354, 480
SstI	GAGCTC	1 cut(s)	256
StyI	CCWWGG	2 cut(s)	6, 479
TaaI	ACNGT	1 cut(s)	550
TaiI	ACGT	2 cut(s)	142, 183
TaqI	TCGA	5 cut(s)	216, 336, 399, 506, 588
TasI	AATT	4 cut(s)	107, 119, 500, 691
TscAI	CASTG	3 cut(s)	22, 294, 555
TseFI	GTSAC	2 cut(s)	17, 142
TseI	GCWGC	4 cut(s)	274, 277, 630, 646
Tsp45I	GTSAC	2 cut(s)	17, 142
TspDTI	ATGAA	2 cut(s)	58, 260
TspRI	CASTG	3 cut(s)	22, 294, 555
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	1 cut(s)	688
XmaJI	CCTAGG	1 cut(s)	479
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	3 cut(s)	170, 354, 480
ZraI	GACGTC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.