Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000735

Physical Location & Seq

Genomic Coordinates Reverse (-)

8198253 .. 8199789

Gene Structure 1537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G067900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCCGATGAGTATTGGGATGTTTTGGGTGATCCTTATTACGCCACACGGATTCTCGAAATCTCCGAATTACCTGAAACCGCCGTGAAATCTCAATTGTGGCTAGACATCTACGCCACTGTCACACAAATTGTGTTGCCTTCGAATTTAGAGGACGATGAGGATTTGGAAGACCACTACAAAGTAATGATGTTAGAAGATGATCACATGGGCCAACCCACCGAGAGCTTCGATTACCACGACAAACTCGAGATTGACCTACTAACGGAGGACAGGTCCAAGTCATCGATTTTGGCTACCATATCCAAGGAGCTATCCAAGTCTATCCACGTCTCGTCCCAGGACCTTCGGTGCGTCGCTGCTACTATAGTCCATGACGCCTCACGGAGTCTTGTTGGGAGAGTGTGTACCAGCGGCAGCCGGGGGTTACGTGTGCATATGGAGGCGTGCATAAAGATTGATGCGATCGTTGAGGACGTGGCGGCGGATGATGAAGTGCAGCCCGCGTTTGTACCGGCGAGTAAATCTGCTATTGAGAAGCTGGAGAGGGTGAGAGTGGAAACGGCTGGGGTTTGTTGTTCGGTTTGTATAGCTGAGATTGCGGTGGGTTCGGAAGGTCGTGGTCTGCCATGTTCGCATATTTACCACGAGGCTTGCATCGTGGAGTGGTTGGAGAAAAGCCACTTCTGCCCTCTGTGTCGCTTCTCCTTGCCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000153 GO:0000209 GO:0000835 GO:0000836 GO:0002020 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008593 GO:0009056 GO:0009057 GO:0009966 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010646 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0023051 GO:0023052 GO:0030163 GO:0030433 GO:0030968 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034620 GO:0034976 GO:0035264 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040007 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044322 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1902494 GO:1990234 GO:1990381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

240

Amino Acids

26.57

Weight (kDa)

4.63

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000735)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31481 FvH4_6g45550 FvH4_6g45551 FvH4_6g45560
malus_domestica	MD02G1237700.v1.1 MD02G1241100.v1.1 MD07G1074200.v1.1 MD07G1074300.v1.1 MD07G1077200.v1.1 MD09G1258700.v1.1
prunus_persica	Prupe.2G094100_v2.0.a1 Prupe.2G096300_v2.0.a1 Prupe.2G096400_v2.0.a1 Prupe.5G061200_v2.0.a1 Prupe.5G067900_v2.0.a1
pyrus_communis	pycom02g20840 pycom07g05830 pycom07g06070 pycom07g06080
rosa_chinensis	RchiOBHm_Chr1g0336601 RchiOBHm_Chr2g0163491 RchiOBHm_Chr5g0058471 RchiOBHm_Chr7g0236931
rosa_laevigata	RLG00000001047 RLG00000021406 RLG00000029344 RLG00000035224 RLG00000035225 RLG00000035226 RLG00000036678
rosa_multiflora	Rmu_co8414615.1_g000001 Rmu_sc0000367.1_g000124 Rmu_sc0000367.1_g000131 Rmu_sc0001969.1_g000007 Rmu_sc0004006.1_g000003 Rmu_sc0005576.1_g000003 Rmu_sc0008383.1_g000007 Rmu_sc0013124.1_g000008 Rmu_sc0024363.1_g000004 Rmu_ssc0000335.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004750 Rroxscaffold_1G00022030 Rroxscaffold_1G00022050 Rroxscaffold_1G00022060 Rroxscaffold_2G00087240 Rroxscaffold_2G00087270 Rroxscaffold_3G00224680
rosa_rugosa	Rorug04G0097000 Rorug05G0315100 Rorug05G0315200 Rorug05G0315400 Rorug05G0453100 Rorug07G0301000
rosa_samantha	Rh1DG154700 Rh2AG570200 Rh2BG582400 Rh2CG552200 Rh4CG163700 Rh5AG381500 Rh5BG393100 Rh5CG417300 Rh5DG408300 Rh5DG408400 Rh5DG541900 Rh7AG456000 Rh7BG427300 Rh7CG474800 Rh7DG443900
rosa_wichuraiana	Rw1G011960 Rw2G047210 Rw5G035950 Rw7G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	506
AciI	CCGC	6 cut(s)	81, 414, 482, 485, 504, 602
AclWI	GGATC	1 cut(s)	26
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	145
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	2 cut(s)	409, 513
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflIII	ACRYGT	1 cut(s)	430
AjiI	CACGTC	2 cut(s)	331, 478
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	4 cut(s)	228, 313, 541, 593
AluI	AGCT	4 cut(s)	228, 313, 541, 593
Alw26I	GTCTC	1 cut(s)	337
AlwI	GGATC	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	2 cut(s)	3, 211
ApeKI	GCWGC	3 cut(s)	359, 417, 499
ApoI	RAATTY	1 cut(s)	145
AspS9I	GGNCC	3 cut(s)	211, 276, 343
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	2 cut(s)	41, 562
AsuII	TTCGAA	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	248
AvaII	GGWCC	2 cut(s)	276, 343
BauI	CACGAG	1 cut(s)	647
BbsI	GAAGAC	1 cut(s)	177
BbvI	GCAGC	3 cut(s)	346, 429, 511
BceAI	ACGGC	2 cut(s)	68, 579
BciT130I	CCWGG	1 cut(s)	341
BclI	TGATCA	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	422
BcoDI	GTCTC	1 cut(s)	337
BfaI	CTAG	2 cut(s)	104, 718
BfmI	CTRYAG	1 cut(s)	366
BisI	GCNGC	5 cut(s)	360, 415, 418, 483, 500
BlsI	GCNGC	5 cut(s)	361, 416, 419, 484, 501
Bme1390I	CCNGG	2 cut(s)	341, 422
Bme18I	GGWCC	2 cut(s)	276, 343
BmeT110I	CYCGRG	1 cut(s)	248
BmgBI	CACGTC	2 cut(s)	331, 478
BmgT120I	GGNCC	3 cut(s)	211, 276, 343
BmrFI	CCNGG	2 cut(s)	341, 422
BmsI	GCATC	2 cut(s)	451, 666
BpiI	GAAGAC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	563
Bpu14I	TTCGAA	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	422
Bsa29I	ATCGAT	1 cut(s)	287
BsaAI	YACGTR	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	306, 339, 421
BsaXI	ACNNNNNCTCC	4 cut(s)	260, 290, 391, 421
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse118I	RCCGGY	1 cut(s)	514
BseBI	CCWGG	1 cut(s)	341
BseCI	ATCGAT	1 cut(s)	287
BseDI	CCNNGG	3 cut(s)	306, 339, 421
BseGI	GGATG	2 cut(s)	25, 493
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	585
BseXI	GCAGC	3 cut(s)	346, 429, 511
BseYI	CCCAGC	1 cut(s)	566
BsgI	GTGCAG	1 cut(s)	518
Bsh1236I	CGCG	1 cut(s)	506
Bsh1285I	CGRYCG	1 cut(s)	468
BshFI	GGCC	2 cut(s)	5, 213
BshVI	ATCGAT	1 cut(s)	287
BsiEI	CGRYCG	1 cut(s)	468
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	2 cut(s)	421, 515
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	337
BsmBI	CGTCTC	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	5, 213
BsoBI	CYCGRG	1 cut(s)	248
Bsp119I	TTCGAA	1 cut(s)	143
Bsp143I	GATC	3 cut(s)	31, 202, 465
BspACI	CCGC	6 cut(s)	81, 414, 482, 485, 504, 602
BspANI	GGCC	2 cut(s)	5, 213
BspCNI	CTCAG	1 cut(s)	586
BspDI	ATCGAT	1 cut(s)	287
BspFNI	CGCG	1 cut(s)	506
BspPI	GGATC	1 cut(s)	26
BspT104I	TTCGAA	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	514
BssAI	RCCGGY	1 cut(s)	514
BssECI	CCNNGG	3 cut(s)	306, 339, 421
BssMI	GATC	3 cut(s)	31, 202, 465
BssNI	GRCGYC	1 cut(s)	378
BssSI	CACGAG	1 cut(s)	647
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	647
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	378
BstBAI	YACGTR	1 cut(s)	431
BstBI	TTCGAA	1 cut(s)	143
BstC8I	GCNNGC	4 cut(s)	448, 504, 655, 714
BstDEI	CTNAG	1 cut(s)	594
BstF5I	GGATG	2 cut(s)	25, 493
BstFNI	CGCG	1 cut(s)	506
BstKTI	GATC	3 cut(s)	34, 205, 468
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	3 cut(s)	31, 202, 465
BstMCI	CGRYCG	1 cut(s)	468
BstMWI	GCNNNNNNNGC	3 cut(s)	599, 634, 687
BstNI	CCWGG	1 cut(s)	341
BstSCI	CCNGG	2 cut(s)	339, 420
BstSFI	CTRYAG	1 cut(s)	366
BstUI	CGCG	1 cut(s)	506
BstV1I	GCAGC	3 cut(s)	346, 429, 511
BstV2I	GAAGAC	1 cut(s)	177
Bsu15I	ATCGAT	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	5, 213
BsuTUI	ATCGAT	1 cut(s)	287
BtrI	CACGTC	2 cut(s)	331, 478
BtsCI	GGATG	2 cut(s)	25, 493
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	4 cut(s)	448, 504, 655, 714
Cfr10I	RCCGGY	1 cut(s)	514
Cfr13I	GGNCC	3 cut(s)	211, 276, 343
ClaI	ATCGAT	1 cut(s)	287
CseI	GACGC	2 cut(s)	343, 386
Csp6I	GTAC	2 cut(s)	408, 512
CspCI	CAANNNNNGTGG	2 cut(s)	635, 670
CviAII	CATG	3 cut(s)	208, 374, 630
CviQI	GTAC	2 cut(s)	408, 512
DdeI	CTNAG	1 cut(s)	594
DpnI	GATC	3 cut(s)	33, 204, 467
DpnII	GATC	3 cut(s)	31, 202, 465
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	306
Eco47I	GGWCC	2 cut(s)	276, 343
Eco88I	CYCGRG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	3 cut(s)	211, 377, 633
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	3 cut(s)	207, 373, 629
FauI	CCCGC	1 cut(s)	511
FauNDI	CATATG	1 cut(s)	438
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	5 cut(s)	360, 415, 418, 483, 500
FokI	GGATG	2 cut(s)	32, 500
Fsp4HI	GCNGC	5 cut(s)	360, 415, 418, 483, 500
FspBI	CTAG	2 cut(s)	104, 718
GluI	GCNGC	5 cut(s)	360, 415, 418, 483, 500
GsaI	CCCAGC	1 cut(s)	570
GsuI	CTGGAG	1 cut(s)	563
HaeIII	GGCC	2 cut(s)	5, 213
HapII	CCGG	2 cut(s)	421, 515
HgaI	GACGC	2 cut(s)	343, 386
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	3 cut(s)	211, 377, 633
HinfI	GANTC	2 cut(s)	52, 388
HpaII	CCGG	2 cut(s)	421, 515
HphI	GGTGA	2 cut(s)	41, 562
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	2 cut(s)	67, 613
Hpy188III	TCNNGA	2 cut(s)	56, 250
Hpy8I	GTNNAC	1 cut(s)	408
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	3 cut(s)	150, 356, 608
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	3 cut(s)	330, 430, 477
HpyCH4V	TGCA	4 cut(s)	436, 450, 499, 657
HpyF10VI	GCNNNNNNNGC	3 cut(s)	599, 634, 687
HpyF3I	CTNAG	1 cut(s)	594
HpySE526I	ACGT	3 cut(s)	330, 430, 477
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	3 cut(s)	211, 377, 633
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	31, 202, 465
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	9 cut(s)	87, 259, 326, 353, 424, 434, 527, 528, 552
Lsp1109I	GCAGC	3 cut(s)	346, 429, 511
LweI	GCATC	2 cut(s)	451, 666
MaeI	CTAG	2 cut(s)	104, 718
MaeII	ACGT	3 cut(s)	330, 430, 477
MaeIII	GTNAC	2 cut(s)	121, 426
MalI	GATC	3 cut(s)	33, 204, 467
MboI	GATC	3 cut(s)	31, 202, 465
MboII	GAAGA	2 cut(s)	182, 209
MfeI	CAATTG	1 cut(s)	95
MluCI	AATT	4 cut(s)	68, 95, 129, 145
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	1 cut(s)	651
MnlI	CCTC	9 cut(s)	145, 154, 262, 391, 436, 466, 540, 643, 702
MspA1I	CMGCKG	1 cut(s)	414
MspI	CCGG	2 cut(s)	421, 515
MspR9I	CCNGG	2 cut(s)	341, 422
MunI	CAATTG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	341
MvnI	CGCG	1 cut(s)	506
MwoI	GCNNNNNNNGC	3 cut(s)	599, 634, 687
NciI	CCSGG	1 cut(s)	422
NdeI	CATATG	1 cut(s)	438
NdeII	GATC	3 cut(s)	31, 202, 465
NlaIII	CATG	3 cut(s)	211, 377, 633
NmuCI	GTSAC	1 cut(s)	121
NspV	TTCGAA	1 cut(s)	143
PaeR7I	CTCGAG	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	4 cut(s)	63, 237, 246, 474
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	5 cut(s)	361, 416, 419, 484, 501
Ple19I	CGATCG	1 cut(s)	468
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
Ppu21I	YACGTR	1 cut(s)	431
PpuMI	RGGWCCY	1 cut(s)	343
Psp5II	RGGWCCY	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	339
PspFI	CCCAGC	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	339
PspPI	GGNCC	3 cut(s)	211, 276, 343
PspPPI	RGGWCCY	1 cut(s)	343
PvuI	CGATCG	1 cut(s)	468
RsaI	GTAC	2 cut(s)	409, 513
RsaNI	GTAC	2 cut(s)	408, 512
SatI	GCNGC	5 cut(s)	360, 415, 418, 483, 500
Sau3AI	GATC	3 cut(s)	31, 202, 465
Sau96I	GGNCC	3 cut(s)	211, 276, 343
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	2 cut(s)	341, 422
SfaNI	GCATC	2 cut(s)	451, 666
SfcI	CTRYAG	1 cut(s)	366
Sfr274I	CTCGAG	1 cut(s)	248
SfuI	TTCGAA	1 cut(s)	143
SinI	GGWCC	2 cut(s)	276, 343
SlaI	CTCGAG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	4 cut(s)	68, 95, 129, 145
SsiI	CCGC	6 cut(s)	81, 414, 482, 485, 504, 602
SspMI	CTAG	2 cut(s)	104, 718
StyD4I	CCNGG	2 cut(s)	339, 420
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	3 cut(s)	333, 433, 480
TaqI	TCGA	5 cut(s)	57, 143, 231, 249, 287
TasI	AATT	4 cut(s)	68, 95, 129, 145
TauI	GCSGC	2 cut(s)	417, 485
TfiI	GAWTC	1 cut(s)	52
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	3 cut(s)	359, 417, 499
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	507
TspGWI	ACGGA	3 cut(s)	64, 281, 400
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	2 cut(s)	276, 343
XapI	RAATTY	1 cut(s)	145
XhoI	CTCGAG	1 cut(s)	248
XspI	CTAG	2 cut(s)	104, 718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.