Rw7G037850

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000735
Physical Location & Seq
Forward (+)
57387406 .. 57388098
693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G037850.1

Sequence Viewer

Length: 693 bp
ATGGATCAGGAAATTGAGAATACTAGAACTGATTGCTGGTTGGAAAAGATCGAAGATCCTGAAATCGAGTTGGGTTGCACCAAGTTGGTGATGGAGATCGAGGCCACAATTACATGCCCAGGCAGATATTCGGAGGAAGAAGAAGACGGAGATGATGAGGACTACTCCGATATCAATCAAATTCTAGCACTAGACAGCAACAGTTATGAGGACACACTCGAACTTAACTTCTTGATGGACGACAACAATGGAACCGCCCCGACTCGATTTATGATGGAACAAATATCTAGCAAGCTCTTCGATTTGAATGTTCCCTTTAGGGATCATGAATCCATAGCAGACAAAATATTGAACTATGTCTTGGCGGTGGCAAGAGATCCTAGTCGTAAAGCCGACGGCAAGATTTTGTGTATGAGGGCCGTCATCCATGCTTTTGGGGAAGAATTGGGAGATGAGGATATGGACATTGACCCTAAATTTGTGCCTGCAAGTAAATCGGCTTTGGAGAAATTGGAGAGGGCGATCGTTGTCCAAGTCTCAACGATGTGTTCGGTTTGTAGGGAGGAGCTTGTGGCTGGTTCCGAAGCAACTCGGATGCCGTGTTTGCATCTTTACCATGAGAGTTGCATTGTAGAGTGGTTGGGTAAGAGCAAGTACTGCCCACTGTGTCGATATTCCATGCCAAGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

230

Amino Acids

26.11

Weight (kDa)

4.35

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 179 - 224 2.7e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 182 - 224 1.3e-12 Ring finger domain
zf-C3HC4_2 PF13923 182 - 223 8.5e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 183 - 223 8.6e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 183 - 210 4.2e-06 RING-like zinc finger
zf-RING_UBOX PF13445 183 - 221 5.2e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 255, 365
AclWI GGATC 4 cut(s) 12, 50, 330, 371
AcsI RAATTY 2 cut(s) 180, 476
AfaI GTAC 1 cut(s) 656
AgsI TTSAA 2 cut(s) 307, 352
AjnI CCWGG 1 cut(s) 118
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AluBI AGCT 2 cut(s) 295, 568
AluI AGCT 2 cut(s) 295, 568
Alw26I GTCTC 1 cut(s) 541
AlwI GGATC 4 cut(s) 12, 50, 330, 371
AoxI GGCC 2 cut(s) 102, 417
ApoI RAATTY 2 cut(s) 180, 476
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
AspS9I GGNCC 1 cut(s) 417
AsuHPI GGTGA 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 150
BccI CCATC 3 cut(s) 85, 229, 268
BceAI ACGGC 3 cut(s) 404, 412, 583
BcgI CGANNNNNNTGC 4 cut(s) 280, 314, 477, 511
BciT130I CCWGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 541
BfaI CTAG 5 cut(s) 24, 185, 191, 288, 381
BmcAI AGTACT 1 cut(s) 656
Bme1390I CCNGG 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 417
BmiI GGNNCC 2 cut(s) 253, 580
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 2 cut(s) 585, 616
BpiI GAAGAC 1 cut(s) 150
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BsaBI GATNNNNATC 2 cut(s) 95, 174
BsaJI CCNNGG 1 cut(s) 118
Bse8I GATNNNNATC 2 cut(s) 95, 174
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 2 cut(s) 423, 600
BseJI GATNNNNATC 2 cut(s) 95, 174
BseRI GAGGAG 1 cut(s) 578
Bsh1285I CGRYCG 1 cut(s) 525
BshFI GGCC 2 cut(s) 104, 419
BsiEI CGRYCG 1 cut(s) 525
BsmAI GTCTC 1 cut(s) 541
BsnI GGCC 2 cut(s) 104, 419
Bsp143I GATC 7 cut(s) 4, 48, 55, 96, 322, 376, 522
BspACI CCGC 2 cut(s) 255, 365
BspANI GGCC 2 cut(s) 104, 419
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 253, 580
BspPI GGATC 4 cut(s) 12, 50, 330, 371
BspQI GCTCTTC 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 7 cut(s) 4, 48, 55, 96, 322, 376, 522
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 203, 666
Bst6I CTCTTC 1 cut(s) 302
BstAPI GCANNNNNTGC 1 cut(s) 657
BstC8I GCNNGC 2 cut(s) 293, 486
BstF5I GGATG 2 cut(s) 423, 600
BstKTI GATC 7 cut(s) 7, 51, 58, 99, 325, 379, 525
BstMAI GTCTC 1 cut(s) 541
BstMBI GATC 7 cut(s) 4, 48, 55, 96, 322, 376, 522
BstMCI CGRYCG 1 cut(s) 525
BstMWI GCNNNNNNNGC 2 cut(s) 604, 657
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 2 cut(s) 55, 376
BstXI CCANNNNNNTGG 1 cut(s) 434
BstYI RGATCY 2 cut(s) 55, 376
BsuRI GGCC 2 cut(s) 104, 419
BtsCI GGATG 2 cut(s) 423, 600
BtsIMutI CAGTG 1 cut(s) 662
Cac8I GCNNGC 2 cut(s) 293, 486
CciI TCATGA 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 417
Csp6I GTAC 1 cut(s) 655
CviAII CATG 5 cut(s) 114, 326, 428, 617, 679
CviJI RGCY 7 cut(s) 104, 295, 392, 419, 500, 568, 575
CviKI_1 RGCY 7 cut(s) 104, 295, 392, 419, 500, 568, 575
CviQI GTAC 1 cut(s) 655
DpnI GATC 7 cut(s) 6, 50, 57, 98, 324, 378, 524
DpnII GATC 7 cut(s) 4, 48, 55, 96, 322, 376, 522
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco32I GATATC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 118
EcoRV GATATC 1 cut(s) 172
FaeI CATG 5 cut(s) 117, 329, 431, 620, 682
FatI CATG 5 cut(s) 113, 325, 427, 616, 678
FokI GGATG 2 cut(s) 410, 607
FspBI CTAG 5 cut(s) 24, 185, 191, 288, 381
HaeIII GGCC 2 cut(s) 104, 419
Hin1II CATG 5 cut(s) 117, 329, 431, 620, 682
HinfI GANTC 2 cut(s) 262, 329
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 4 cut(s) 133, 169, 583, 594
Hpy188III TCNNGA 4 cut(s) 8, 59, 232, 326
Hpy99I CGWCG 1 cut(s) 398
HpyCH4III ACNGT 2 cut(s) 203, 666
HpyCH4V TGCA 4 cut(s) 78, 488, 607, 627
HpyF10VI GCNNNNNNNGC 2 cut(s) 604, 657
Hsp92II CATG 5 cut(s) 117, 329, 431, 620, 682
Kzo9I GATC 7 cut(s) 4, 48, 55, 96, 322, 376, 522
LguI GCTCTTC 1 cut(s) 302
LmnI GCTCC 1 cut(s) 565
LpnPI CCDG 6 cut(s) 22, 72, 105, 132, 498, 561
LweI GCATC 2 cut(s) 585, 616
MaeI CTAG 5 cut(s) 24, 185, 191, 288, 381
MalI GATC 7 cut(s) 6, 50, 57, 98, 324, 378, 524
MboI GATC 7 cut(s) 4, 48, 55, 96, 322, 376, 522
MboII GAAGA 6 cut(s) 65, 149, 152, 155, 289, 452
MflI RGATCY 2 cut(s) 55, 376
MluCI AATT 6 cut(s) 12, 108, 180, 443, 476, 509
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 8 cut(s) 94, 127, 151, 202, 408, 448, 510, 556
MseI TTAA 1 cut(s) 225
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 604, 657
NdeII GATC 7 cut(s) 4, 48, 55, 96, 322, 376, 522
NlaIII CATG 5 cut(s) 117, 329, 431, 620, 682
NlaIV GGNNCC 2 cut(s) 253, 580
NspI RCATGY 1 cut(s) 117
PagI TCATGA 1 cut(s) 325
PciSI GCTCTTC 1 cut(s) 302
PfeI GAWTC 1 cut(s) 329
Ple19I CGATCG 1 cut(s) 525
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 253, 580
PspPI GGNCC 1 cut(s) 417
PsuI RGATCY 2 cut(s) 55, 376
PvuI CGATCG 1 cut(s) 525
RsaI GTAC 1 cut(s) 656
RsaNI GTAC 1 cut(s) 655
SapI GCTCTTC 1 cut(s) 302
SaqAI TTAA 1 cut(s) 225
Sau3AI GATC 7 cut(s) 4, 48, 55, 96, 322, 376, 522
Sau96I GGNCC 1 cut(s) 417
ScaI AGTACT 1 cut(s) 656
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 120
SetI ASST 2 cut(s) 297, 570
SfaNI GCATC 2 cut(s) 585, 616
Sse9I AATT 6 cut(s) 12, 108, 180, 443, 476, 509
SsiI CCGC 2 cut(s) 255, 365
SspI AATATT 1 cut(s) 348
SspMI CTAG 5 cut(s) 24, 185, 191, 288, 381
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 2 cut(s) 203, 666
TaqI TCGA 7 cut(s) 51, 66, 99, 219, 265, 300, 670
TasI AATT 6 cut(s) 12, 108, 180, 443, 476, 509
TatI WGTACW 1 cut(s) 654
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 669
TspDTI ATGAA 1 cut(s) 342
TspGWI ACGGA 1 cut(s) 162
TspRI CASTG 1 cut(s) 669
XapI RAATTY 2 cut(s) 180, 476
XceI RCATGY 1 cut(s) 117
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XspI CTAG 5 cut(s) 24, 185, 191, 288, 381
ZrmI AGTACT 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.