Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000735

Physical Location & Seq

Genomic Coordinates Reverse (-)

32255907 .. 32257620

Gene Structure 1714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG154700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGATCAGGAAATTGAGAATTCTAGCACTGATTGCTGGTTGGAAAGGATTGACGATCCTAAAATCGAGTTGGGTGGCACCAAGTTGGTGATGGAGATCGAAGCCACAATTACATGTCCCAGCAGATATCCGATGGAAGAAGAAGAAGATGATGAGGACTACTCCGATATCAATCGAATTCTAGCACAAGACAGCAACAGTTACGAGGGCACACTCGAACTTAACTTGTTGATGGAAAACAACAGTGGAACTGCCTCGACTCGATTTATGAGGGAAGAAATATCTAAGAAGCTCTTCGACTTGAATGTTCCCTTTAGGGATCATGAATCCATAGCAGACAAAATATTGAATGATGTCTTTGCGGTGACAAGAGATCCTAGTTGTAAAGCCGACGGCAAGATTTTTCATATGAGGGCTGTTATCCATGTTTTTGGGGAAGAATTGGGAGATGAGGATATGGAAATTGAGCCTTACTTTGTGCCTGCAAGTAAATCGGCAATGGAGAAGTTGGAGAAGGCGATCGTTGTCCAAGTCTCGACAATGTGTTCGGTATGTAGGGAGGACATGATGGCTGGTTCCGAAGCAACTCGGATGCCGTGTTTGCATCTTTACCATGAGAGCTGCATTGTAGAATGGTTGGGGAAGAGCAAGTACTGCCCACTGTGTCGATATTCCATGCCAAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

229

Amino Acids

26.14

Weight (kDa)

4.48

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	178 - 223	4.2e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	181 - 223	1.1e-12	Ring finger domain
zf-C3HC4_2	PF13923	181 - 222	8.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	182 - 222	2.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	182 - 209	6.7e-06	RING-like zinc finger
zf-RING_UBOX	PF13445	182 - 220	6.6e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000735)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31481 FvH4_6g45550 FvH4_6g45551 FvH4_6g45560
malus_domestica	MD02G1237700.v1.1 MD02G1241100.v1.1 MD07G1074200.v1.1 MD07G1074300.v1.1 MD07G1077200.v1.1 MD09G1258700.v1.1
prunus_persica	Prupe.2G094100_v2.0.a1 Prupe.2G096300_v2.0.a1 Prupe.2G096400_v2.0.a1 Prupe.5G061200_v2.0.a1 Prupe.5G067900_v2.0.a1
pyrus_communis	pycom02g20840 pycom07g05830 pycom07g06070 pycom07g06080
rosa_chinensis	RchiOBHm_Chr1g0336601 RchiOBHm_Chr2g0163491 RchiOBHm_Chr5g0058471 RchiOBHm_Chr7g0236931
rosa_laevigata	RLG00000001047 RLG00000021406 RLG00000029344 RLG00000035224 RLG00000035225 RLG00000035226 RLG00000036678
rosa_multiflora	Rmu_co8414615.1_g000001 Rmu_sc0000367.1_g000124 Rmu_sc0000367.1_g000131 Rmu_sc0001969.1_g000007 Rmu_sc0004006.1_g000003 Rmu_sc0005576.1_g000003 Rmu_sc0008383.1_g000007 Rmu_sc0013124.1_g000008 Rmu_sc0024363.1_g000004 Rmu_ssc0000335.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004750 Rroxscaffold_1G00022030 Rroxscaffold_1G00022050 Rroxscaffold_1G00022060 Rroxscaffold_2G00087240 Rroxscaffold_2G00087270 Rroxscaffold_3G00224680
rosa_rugosa	Rorug04G0097000 Rorug05G0315100 Rorug05G0315200 Rorug05G0315400 Rorug05G0453100 Rorug07G0301000
rosa_samantha	Rh1DG154700 Rh2AG570200 Rh2BG582400 Rh2CG552200 Rh4CG163700 Rh5AG381500 Rh5BG393100 Rh5CG417300 Rh5DG408300 Rh5DG408400 Rh5DG541900 Rh7AG456000 Rh7BG427300 Rh7CG474800 Rh7DG443900
rosa_wichuraiana	Rw1G011960 Rw2G047210 Rw5G035950 Rw7G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	4 cut(s)	12, 50, 327, 368
AcsI	RAATTY	2 cut(s)	19, 177
AfaI	GTAC	1 cut(s)	653
AflIII	ACRYGT	1 cut(s)	113
AgsI	TTSAA	2 cut(s)	304, 349
AluBI	AGCT	2 cut(s)	292, 621
AluI	AGCT	2 cut(s)	292, 621
Alw26I	GTCTC	1 cut(s)	538
AlwI	GGATC	4 cut(s)	12, 50, 327, 368
ApeKI	GCWGC	1 cut(s)	621
ApoI	RAATTY	2 cut(s)	19, 177
ArsI	GACNNNNNNTTYG	2 cut(s)	529, 561
Asp700I	GAANNNNTTC	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	100, 376
BaeGI	GKGCMC	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	77
BarI	GAAGNNNNNNTAC	2 cut(s)	635, 667
BbvI	GCAGC	1 cut(s)	608
BccI	CCATC	4 cut(s)	85, 127, 226, 562
BceAI	ACGGC	2 cut(s)	409, 580
BcgI	CGANNNNNNTGC	2 cut(s)	474, 508
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	3 cut(s)	24, 182, 378
BisI	GCNGC	1 cut(s)	622
BlsI	GCNGC	1 cut(s)	623
BmcAI	AGTACT	1 cut(s)	653
BmiI	GGNNCC	2 cut(s)	79, 577
BmsI	GCATC	2 cut(s)	582, 613
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BsaBI	GATNNNNATC	2 cut(s)	95, 171
Bse3DI	GCAATG	1 cut(s)	504
Bse8I	GATNNNNATC	2 cut(s)	95, 171
BseGI	GGATG	1 cut(s)	597
BseJI	GATNNNNATC	2 cut(s)	95, 171
BseMI	GCAATG	1 cut(s)	504
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	608
BseYI	CCCAGC	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	522
BshNI	GGYRCC	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	538
BsmFI	GGGAC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	6 cut(s)	4, 55, 96, 319, 373, 519
BspACI	CCGC	1 cut(s)	362
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	79, 577
BspPI	GGATC	4 cut(s)	12, 50, 327, 368
BspQI	GCTCTTC	2 cut(s)	299, 638
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	504
BssMI	GATC	6 cut(s)	4, 55, 96, 319, 373, 519
Bst4CI	ACNGT	3 cut(s)	200, 245, 663
Bst6I	CTCTTC	2 cut(s)	299, 638
BstAPI	GCANNNNNTGC	2 cut(s)	33, 654
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	597
BstKTI	GATC	6 cut(s)	7, 58, 99, 322, 376, 522
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	6 cut(s)	4, 55, 96, 319, 373, 519
BstMCI	CGRYCG	1 cut(s)	522
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 601, 654
BstNSI	RCATGY	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	608
BstX2I	RGATCY	1 cut(s)	373
BstXI	CCANNNNNNTGG	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	373
BtsCI	GGATG	1 cut(s)	597
BtsIMutI	CAGTG	3 cut(s)	27, 250, 659
Cac8I	GCNNGC	1 cut(s)	483
CciI	TCATGA	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	652
CviAII	CATG	6 cut(s)	114, 323, 425, 565, 614, 676
CviJI	RGCY	7 cut(s)	104, 292, 389, 416, 469, 572, 621
CviKI_1	RGCY	7 cut(s)	104, 292, 389, 416, 469, 572, 621
CviQI	GTAC	1 cut(s)	652
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	6 cut(s)	6, 57, 98, 321, 375, 521
DpnII	GATC	6 cut(s)	4, 55, 96, 319, 373, 519
Eam1104I	CTCTTC	2 cut(s)	299, 638
EarI	CTCTTC	2 cut(s)	299, 638
Eco32I	GATATC	2 cut(s)	128, 169
EcoRI	GAATTC	2 cut(s)	19, 177
EcoRV	GATATC	2 cut(s)	128, 169
FaeI	CATG	6 cut(s)	117, 326, 428, 568, 617, 679
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	6 cut(s)	113, 322, 424, 564, 613, 675
FauNDI	CATATG	1 cut(s)	408
Fnu4HI	GCNGC	1 cut(s)	622
FokI	GGATG	1 cut(s)	604
Fsp4HI	GCNGC	1 cut(s)	622
FspBI	CTAG	3 cut(s)	24, 182, 378
GluI	GCNGC	1 cut(s)	622
GsaI	CCCAGC	1 cut(s)	123
Hin1II	CATG	6 cut(s)	117, 326, 428, 568, 617, 679
HinfI	GANTC	2 cut(s)	259, 326
HphI	GGTGA	2 cut(s)	100, 376
Hpy188I	TCNGA	4 cut(s)	132, 166, 580, 591
Hpy188III	TCNNGA	3 cut(s)	8, 323, 535
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	1 cut(s)	508
HpyCH4III	ACNGT	3 cut(s)	200, 245, 663
HpyCH4V	TGCA	3 cut(s)	485, 604, 624
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 601, 654
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	6 cut(s)	117, 326, 428, 568, 617, 679
Kzo9I	GATC	6 cut(s)	4, 55, 96, 319, 373, 519
LguI	GCTCTTC	2 cut(s)	299, 638
LpnPI	CCDG	4 cut(s)	22, 133, 495, 558
Lsp1109I	GCAGC	1 cut(s)	608
LweI	GCATC	2 cut(s)	582, 613
MaeI	CTAG	3 cut(s)	24, 182, 378
MaeIII	GTNAC	2 cut(s)	200, 364
MalI	GATC	6 cut(s)	6, 57, 98, 321, 375, 521
MboI	GATC	6 cut(s)	4, 55, 96, 319, 373, 519
MboII	GAAGA	8 cut(s)	149, 152, 155, 158, 286, 287, 449, 655
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	6 cut(s)	12, 19, 108, 177, 440, 462
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	2 cut(s)	21, 489
MnlI	CCTC	7 cut(s)	148, 199, 264, 265, 405, 445, 553
MroXI	GAANNNNTTC	1 cut(s)	293
MseI	TTAA	2 cut(s)	222, 688
MwoI	GCNNNNNNNGC	3 cut(s)	33, 601, 654
NdeI	CATATG	1 cut(s)	408
NdeII	GATC	6 cut(s)	4, 55, 96, 319, 373, 519
NlaIII	CATG	6 cut(s)	117, 326, 428, 568, 617, 679
NlaIV	GGNNCC	2 cut(s)	79, 577
NmuCI	GTSAC	1 cut(s)	364
NspI	RCATGY	1 cut(s)	117
PagI	TCATGA	1 cut(s)	322
PciI	ACATGT	1 cut(s)	113
PciSI	GCTCTTC	2 cut(s)	299, 638
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	623
Ple19I	CGATCG	1 cut(s)	522
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PscI	ACATGT	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	79, 577
PsuI	RGATCY	1 cut(s)	373
PvuI	CGATCG	1 cut(s)	522
RsaI	GTAC	1 cut(s)	653
RsaNI	GTAC	1 cut(s)	652
SapI	GCTCTTC	2 cut(s)	299, 638
SaqAI	TTAA	2 cut(s)	222, 688
SatI	GCNGC	1 cut(s)	622
Sau3AI	GATC	6 cut(s)	4, 55, 96, 319, 373, 519
ScaI	AGTACT	1 cut(s)	653
SchI	GAGTC	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	2 cut(s)	294, 623
SfaNI	GCATC	2 cut(s)	582, 613
Sse9I	AATT	6 cut(s)	12, 19, 108, 177, 440, 462
SsiI	CCGC	1 cut(s)	362
SspI	AATATT	1 cut(s)	345
SspMI	CTAG	3 cut(s)	24, 182, 378
TaaI	ACNGT	3 cut(s)	200, 245, 663
TaqI	TCGA	9 cut(s)	66, 99, 175, 216, 257, 262, 297, 536, 667
TasI	AATT	6 cut(s)	12, 19, 108, 177, 440, 462
TatI	WGTACW	1 cut(s)	651
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	2 cut(s)	222, 688
Tru9I	TTAA	2 cut(s)	222, 688
TscAI	CASTG	3 cut(s)	34, 250, 666
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	621
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	2 cut(s)	339, 395
TspRI	CASTG	3 cut(s)	34, 250, 666
XapI	RAATTY	2 cut(s)	19, 177
XceI	RCATGY	1 cut(s)	117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	293
XspI	CTAG	3 cut(s)	24, 182, 378
ZrmI	AGTACT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.