Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000735

Physical Location & Seq

Genomic Coordinates Forward (+)

28998448 .. 28999119

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1241100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAAAGTGAAAGTGATCGGCAAGTGGTGGGATACCATTGCCAAGTGAGGCACTTGGAGGTTTTTGAACCTGACAACGAGTTGCCGCGCACCCAGTTCTTGCTGGTTGTCAGGGCCATAATATTTTCAAGTCAGCCTGCAGCCTTGCACTCCGAGGACGAGGACGACGGTGAACACTACGAAGGAACCTACTCCGAGGAACTCGAACTCGATTTATTGATGGATGAAGACAAGTCAAGGGCTGCCCTAGCTGAAGCTTTAGTTTCTTTCCTGCATGTCCCTCCTCAGATTTGCCACTCCGTGGTGGAAAAAATAGTACAAGAATCCCTAGTCGCTGAAACTGATTCTAGACCTTATAGTGATGGCATGTTTGTTCATATGGCAGCGTTCATCACTGTTGTTGTTGATGATGTATTTGAGGGCTTGGAGACGGATGACCCTAAATTTGTGCCTGCAAGTAAGTCATCGATCGAGAAGCTAGAGAGGGCCAGGGTGGAAGTATCTGCGGCGTGTTCGGTTTGCATGGAGGAGATGGAGGTTGGTTCGCAAGCAATTCGCATGCCCTGCTCGCATCTTTACCATAAGGATTGCATTGTTGAGTGGTTGGAGAAAAGCAGGGTTTGCCCACTGTGCCGCTTCGCCATGCCTTCCGAAATAAGAACAAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000153 GO:0000209 GO:0000835 GO:0000836 GO:0002020 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008593 GO:0009056 GO:0009057 GO:0009966 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010646 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0023051 GO:0023052 GO:0030163 GO:0030433 GO:0030968 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034620 GO:0034976 GO:0035264 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040007 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044322 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1902494 GO:1990234 GO:1990381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

224

Amino Acids

25.24

Weight (kDa)

4.63

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	164 - 212	3.3e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	170 - 212	5.1e-15	Ring finger domain
zf-RING_11	PF17123	171 - 198	1.2e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	171 - 211	4.5e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	171 - 211	5.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	171 - 209	1.4e-07	RING-type zinc-finger
zf-RING_5	PF14634	171 - 212	6.9e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000735)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31481 FvH4_6g45550 FvH4_6g45551 FvH4_6g45560
malus_domestica	MD02G1237700.v1.1 MD02G1241100.v1.1 MD07G1074200.v1.1 MD07G1074300.v1.1 MD07G1077200.v1.1 MD09G1258700.v1.1
prunus_persica	Prupe.2G094100_v2.0.a1 Prupe.2G096300_v2.0.a1 Prupe.2G096400_v2.0.a1 Prupe.5G061200_v2.0.a1 Prupe.5G067900_v2.0.a1
pyrus_communis	pycom02g20840 pycom07g05830 pycom07g06070 pycom07g06080
rosa_chinensis	RchiOBHm_Chr1g0336601 RchiOBHm_Chr2g0163491 RchiOBHm_Chr5g0058471 RchiOBHm_Chr7g0236931
rosa_laevigata	RLG00000001047 RLG00000021406 RLG00000029344 RLG00000035224 RLG00000035225 RLG00000035226 RLG00000036678
rosa_multiflora	Rmu_co8414615.1_g000001 Rmu_sc0000367.1_g000124 Rmu_sc0000367.1_g000131 Rmu_sc0001969.1_g000007 Rmu_sc0004006.1_g000003 Rmu_sc0005576.1_g000003 Rmu_sc0008383.1_g000007 Rmu_sc0013124.1_g000008 Rmu_sc0024363.1_g000004 Rmu_ssc0000335.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004750 Rroxscaffold_1G00022030 Rroxscaffold_1G00022050 Rroxscaffold_1G00022060 Rroxscaffold_2G00087240 Rroxscaffold_2G00087270 Rroxscaffold_3G00224680
rosa_rugosa	Rorug04G0097000 Rorug05G0315100 Rorug05G0315200 Rorug05G0315400 Rorug05G0453100 Rorug07G0301000
rosa_samantha	Rh1DG154700 Rh2AG570200 Rh2BG582400 Rh2CG552200 Rh4CG163700 Rh5AG381500 Rh5BG393100 Rh5CG417300 Rh5DG408300 Rh5DG408400 Rh5DG541900 Rh7AG456000 Rh7BG427300 Rh7CG474800 Rh7DG443900
rosa_wichuraiana	Rw1G011960 Rw2G047210 Rw5G035950 Rw7G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	301
AccII	CGCG	1 cut(s)	88
AciI	CCGC	3 cut(s)	86, 506, 634
AcsI	RAATTY	1 cut(s)	443
AcuI	CTGAAG	1 cut(s)	273
AdeI	CACNNNGTG	1 cut(s)	301
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	68, 129
AjnI	CCWGG	1 cut(s)	488
AluBI	AGCT	3 cut(s)	251, 257, 478
AluI	AGCT	3 cut(s)	251, 257, 478
Alw26I	GTCTC	1 cut(s)	422
AoxI	GGCC	2 cut(s)	114, 486
ApeKI	GCWGC	3 cut(s)	140, 242, 383
ApoI	RAATTY	1 cut(s)	443
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	2 cut(s)	114, 486
AsuHPI	GGTGA	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	152, 229, 395
BccI	CCATC	3 cut(s)	214, 356, 526
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	1 cut(s)	490
BciVI	GTATCC	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	4 cut(s)	248, 329, 348, 479
BfmI	CTRYAG	1 cut(s)	138
BfuI	GTATCC	1 cut(s)	26
BisI	GCNGC	6 cut(s)	86, 141, 243, 384, 507, 634
BlsI	GCNGC	6 cut(s)	87, 142, 244, 385, 508, 635
Bme1390I	CCNGG	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	114, 486
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	490
BmrI	ACTGGG	1 cut(s)	88
BmsI	GCATC	1 cut(s)	580
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	234
Bsa29I	ATCGAT	1 cut(s)	467
BsaJI	CCNNGG	4 cut(s)	153, 195, 300, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	490
BseCI	ATCGAT	1 cut(s)	467
BseDI	CCNNGG	4 cut(s)	153, 195, 300, 489
BseGI	GGATG	2 cut(s)	229, 439
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	94
BseRI	GAGGAG	2 cut(s)	273, 542
BseXI	GCAGC	3 cut(s)	152, 229, 395
Bsh1236I	CGCG	1 cut(s)	88
Bsh1285I	CGRYCG	1 cut(s)	471
BshFI	GGCC	2 cut(s)	116, 488
BshVI	ATCGAT	1 cut(s)	467
BsiEI	CGRYCG	1 cut(s)	471
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	422
BsmBI	CGTCTC	1 cut(s)	422
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	2 cut(s)	116, 488
Bsp143I	GATC	2 cut(s)	16, 468
BspACI	CCGC	3 cut(s)	86, 506, 634
BspANI	GGCC	2 cut(s)	116, 488
BspCNI	CTCAG	1 cut(s)	298
BspDI	ATCGAT	1 cut(s)	467
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	4 cut(s)	153, 195, 300, 489
BssMI	GATC	2 cut(s)	16, 468
Bst2UI	CCWGG	1 cut(s)	490
Bst4CI	ACNGT	3 cut(s)	170, 397, 630
BstAPI	GCANNNNNTGC	2 cut(s)	564, 621
BstC8I	GCNNGC	5 cut(s)	138, 453, 549, 560, 569
BstDEI	CTNAG	1 cut(s)	285
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	2 cut(s)	229, 439
BstFNI	CGCG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	2 cut(s)	19, 471
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	2 cut(s)	16, 468
BstMCI	CGRYCG	1 cut(s)	471
BstMWI	GCNNNNNNNGC	5 cut(s)	248, 564, 568, 621, 630
BstNI	CCWGG	1 cut(s)	490
BstNSI	RCATGY	3 cut(s)	278, 370, 562
BstSCI	CCNGG	1 cut(s)	488
BstSFI	CTRYAG	1 cut(s)	138
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	3 cut(s)	152, 229, 395
BstV2I	GAAGAC	1 cut(s)	234
Bsu15I	ATCGAT	1 cut(s)	467
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	116, 488
BsuTUI	ATCGAT	1 cut(s)	467
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	229, 439
BtsIMutI	CAGTG	2 cut(s)	393, 626
Cac8I	GCNNGC	5 cut(s)	138, 453, 549, 560, 569
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	114, 486
ClaI	ATCGAT	1 cut(s)	467
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	5 cut(s)	275, 367, 523, 559, 643
CviJI	RGCY	9 cut(s)	116, 136, 143, 242, 251, 257, 423, 478, 488
CviKI_1	RGCY	9 cut(s)	116, 136, 143, 242, 251, 257, 423, 478, 488
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	2 cut(s)	18, 470
DpnII	GATC	2 cut(s)	16, 468
DraIII	CACNNNGTG	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	488
Esp3I	CGTCTC	1 cut(s)	422
FaeI	CATG	5 cut(s)	278, 370, 526, 562, 646
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	5 cut(s)	274, 366, 522, 558, 642
FauNDI	CATATG	1 cut(s)	378
Fnu4HI	GCNGC	6 cut(s)	86, 141, 243, 384, 507, 634
FokI	GGATG	2 cut(s)	236, 446
Fsp4HI	GCNGC	6 cut(s)	86, 141, 243, 384, 507, 634
FspBI	CTAG	4 cut(s)	248, 329, 348, 479
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	6 cut(s)	86, 141, 243, 384, 507, 634
HaeIII	GGCC	2 cut(s)	116, 488
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	5 cut(s)	278, 370, 526, 562, 646
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	2 cut(s)	323, 344
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	4 cut(s)	154, 196, 288, 652
Hpy188III	TCNNGA	2 cut(s)	348, 472
Hpy8I	GTNNAC	1 cut(s)	173
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	2 cut(s)	176, 657
HpyCH4III	ACNGT	3 cut(s)	170, 397, 630
HpyCH4V	TGCA	6 cut(s)	140, 148, 274, 455, 522, 591
HpyF10VI	GCNNNNNNNGC	5 cut(s)	248, 564, 568, 621, 630
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	5 cut(s)	278, 370, 526, 562, 646
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	16, 468
Lsp1109I	GCAGC	3 cut(s)	152, 229, 395
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	4 cut(s)	248, 329, 348, 479
MalI	GATC	2 cut(s)	18, 470
MboI	GATC	2 cut(s)	16, 468
MboII	GAAGA	1 cut(s)	239
MluCI	AATT	3 cut(s)	443, 552, 667
MmeI	TCCRAC	1 cut(s)	585
MseI	TTAA	1 cut(s)	670
MspR9I	CCNGG	1 cut(s)	490
MvaI	CCWGG	1 cut(s)	490
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	5 cut(s)	248, 564, 568, 621, 630
NdeI	CATATG	1 cut(s)	378
NdeII	GATC	2 cut(s)	16, 468
NlaIII	CATG	5 cut(s)	278, 370, 526, 562, 646
NlaIV	GGNNCC	1 cut(s)	187
NspI	RCATGY	3 cut(s)	278, 370, 562
PaeI	GCATGC	1 cut(s)	562
PfeI	GAWTC	2 cut(s)	323, 344
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	6 cut(s)	87, 142, 244, 385, 508, 635
Ple19I	CGATCG	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	488
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	114, 486
PstI	CTGCAG	1 cut(s)	142
PvuI	CGATCG	1 cut(s)	471
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	670
SatI	GCNGC	6 cut(s)	86, 141, 243, 384, 507, 634
Sau3AI	GATC	2 cut(s)	16, 468
Sau96I	GGNCC	2 cut(s)	114, 486
ScrFI	CCNGG	1 cut(s)	490
SetI	ASST	8 cut(s)	63, 73, 191, 253, 259, 355, 480, 540
SfaNI	GCATC	1 cut(s)	580
SfcI	CTRYAG	1 cut(s)	138
SphI	GCATGC	1 cut(s)	562
Sse9I	AATT	3 cut(s)	443, 552, 667
SsiI	CCGC	3 cut(s)	86, 506, 634
SspI	AATATT	1 cut(s)	123
SspMI	CTAG	4 cut(s)	248, 329, 348, 479
StyD4I	CCNGG	1 cut(s)	488
TaaI	ACNGT	3 cut(s)	170, 397, 630
TaqI	TCGA	4 cut(s)	204, 210, 467, 471
TasI	AATT	3 cut(s)	443, 552, 667
TatI	WGTACW	1 cut(s)	316
TauI	GCSGC	3 cut(s)	88, 509, 636
TfiI	GAWTC	2 cut(s)	323, 344
Tru1I	TTAA	1 cut(s)	670
Tru9I	TTAA	1 cut(s)	670
TscAI	CASTG	2 cut(s)	400, 633
TseI	GCWGC	3 cut(s)	140, 242, 383
TspDTI	ATGAA	3 cut(s)	240, 365, 379
TspGWI	ACGGA	2 cut(s)	289, 446
TspRI	CASTG	2 cut(s)	400, 633
Van91I	CCANNNNNTGG	1 cut(s)	301
XapI	RAATTY	1 cut(s)	443
XbaI	TCTAGA	1 cut(s)	347
XceI	RCATGY	3 cut(s)	278, 370, 562
XspI	CTAG	4 cut(s)	248, 329, 348, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.