RLG00000021406

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000735
Physical Location & Seq
Reverse (-)
74912973 .. 74913960
988 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021406

Sequence Viewer

Length: 576 bp
ATGGCCATGGCCAGTGACTACTGGAAAGTGGTGGGCGACGCTTTTTGCGACATTCTTGTCGCCTTCATGGAACCAGAAAATGAGCTTCTATGCAGCAGCACCAAGTTCTTGATAGAATTTGAGGCGGTGATCAGACGTGTCACCTCCGATGAGGGGGATCGGCTCCTAGACTACGACGTCATCCCCCACGCGATCTGGAAGACCACCTCAATCGAACTTGATGACAACTCTAACTCATCATCCATGGATAGAGCCCTATCTGAAACACTTCGGCAGCTGAAAGTCCCACTGGAGGAGCGTAGCTCCATGGTGGAGAAAGTATTGCTCAAAGCCTTTGAGGCGGCACGGGAACCTTGTCCTTATGTCTGTGGGAAGAGACTGCATATGCGGGTGAACATCGATATGTATGTGATTGATGACGATGTTGATGAGGACGAAAATGATGGCGGTGATTATTATGAGTCTAGGTTTGTGCCGGCCAGTAAATTGTCGATTGAGAAATTGGAGAGGATGACAGTCCAAGTGCCATCAACAGTGTGTTCGGTTTGTATGGAGGAGATTAGGCTGAAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

192

Amino Acids

21.87

Weight (kDa)

4.51

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 56, 176
AatII GACGTC 1 cut(s) 180
AccII CGCG 1 cut(s) 191
AciI CCGC 4 cut(s) 125, 341, 388, 447
AclWI GGATC 1 cut(s) 165
AcoI YGGCCR 3 cut(s) 3, 9, 477
AcsI RAATTY 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 177
AfiI CCNNNNNNNGG 2 cut(s) 153, 292
AflIII ACRYGT 1 cut(s) 136
AjiI CACGTC 1 cut(s) 137
AluBI AGCT 3 cut(s) 85, 277, 303
AluI AGCT 3 cut(s) 85, 277, 303
Alw26I GTCTC 1 cut(s) 370
AlwI GGATC 1 cut(s) 165
AoxI GGCC 3 cut(s) 3, 9, 477
ApeKI GCWGC 3 cut(s) 93, 96, 274
ApoI RAATTY 1 cut(s) 116
Asp700I GAANNNNTTC 1 cut(s) 267
AsuHPI GGTGA 4 cut(s) 133, 139, 403, 461
BalI TGGCCA 2 cut(s) 5, 11
BanII GRGCYC 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 206
BbvI GCAGC 3 cut(s) 105, 108, 286
BccI CCATC 2 cut(s) 437, 535
BclI TGATCA 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 370
BfaI CTAG 2 cut(s) 167, 465
BglI GCCNNNNNGGC 1 cut(s) 338
BisI GCNGC 4 cut(s) 94, 97, 275, 342
BlsI GCNGC 4 cut(s) 95, 98, 276, 343
BmgBI CACGTC 1 cut(s) 137
BmiI GGNNCC 3 cut(s) 72, 164, 351
BpiI GAAGAC 1 cut(s) 206
BplI GAGNNNNNCTC 2 cut(s) 287, 319
BpmI CTGGAG 1 cut(s) 311
Bsa29I ATCGAT 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 3 cut(s) 6, 243, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 292
Bse118I RCCGGY 1 cut(s) 475
Bse1I ACTGG 4 cut(s) 12, 26, 294, 480
BseCI ATCGAT 1 cut(s) 399
BseDI CCNNGG 3 cut(s) 6, 243, 306
BseGI GGATG 3 cut(s) 180, 239, 516
BseLI CCNNNNNNNGG 2 cut(s) 153, 292
BseNI ACTGG 4 cut(s) 12, 26, 294, 480
BseRI GAGGAG 2 cut(s) 308, 569
BseXI GCAGC 3 cut(s) 105, 108, 286
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 3 cut(s) 5, 11, 479
BshVI ATCGAT 1 cut(s) 399
BsiSI CCGG 1 cut(s) 476
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 2 cut(s) 153, 292
BsmAI GTCTC 1 cut(s) 370
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 3 cut(s) 5, 11, 479
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 3 cut(s) 129, 157, 192
Bsp19I CCATGG 3 cut(s) 6, 243, 306
BspACI CCGC 4 cut(s) 125, 341, 388, 447
BspANI GGCC 3 cut(s) 5, 11, 479
BspDI ATCGAT 1 cut(s) 399
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 3 cut(s) 72, 164, 351
BspPI GGATC 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 475
BsrI ACTGG 4 cut(s) 12, 26, 294, 480
BssAI RCCGGY 1 cut(s) 475
BssECI CCNNGG 3 cut(s) 6, 243, 306
BssMI GATC 3 cut(s) 129, 157, 192
BssNI GRCGYC 1 cut(s) 177
BssT1I CCWWGG 3 cut(s) 6, 243, 306
Bst4CI ACNGT 2 cut(s) 517, 535
Bst6I CTCTTC 1 cut(s) 368
BstACI GRCGYC 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 477
BstDSI CCRYGG 3 cut(s) 6, 243, 306
BstF5I GGATG 3 cut(s) 180, 239, 516
BstFNI CGCG 1 cut(s) 191
BstKTI GATC 3 cut(s) 132, 160, 195
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 3 cut(s) 129, 157, 192
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 3 cut(s) 105, 108, 286
BstV2I GAAGAC 1 cut(s) 206
Bsu15I ATCGAT 1 cut(s) 399
BsuRI GGCC 3 cut(s) 5, 11, 479
BsuTUI ATCGAT 1 cut(s) 399
BtgI CCRYGG 3 cut(s) 6, 243, 306
BtrI CACGTC 1 cut(s) 137
BtsCI GGATG 3 cut(s) 180, 239, 516
BtsIMutI CAGTG 3 cut(s) 19, 287, 540
Cac8I GCNNGC 1 cut(s) 477
Cfr10I RCCGGY 1 cut(s) 475
ClaI ATCGAT 1 cut(s) 399
CseI GACGC 1 cut(s) 47
CviAII CATG 4 cut(s) 7, 67, 244, 307
DpnI GATC 3 cut(s) 131, 159, 194
DpnII GATC 3 cut(s) 129, 157, 192
DrdI GACNNNNNNGTC 2 cut(s) 56, 176
DseDI GACNNNNNNGTC 2 cut(s) 56, 176
EaeI YGGCCR 3 cut(s) 3, 9, 477
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
Eco130I CCWWGG 3 cut(s) 6, 243, 306
Eco24I GRGCYC 1 cut(s) 256
EcoT14I CCWWGG 3 cut(s) 6, 243, 306
EcoT38I GRGCYC 1 cut(s) 256
ErhI CCWWGG 3 cut(s) 6, 243, 306
FaeI CATG 4 cut(s) 10, 70, 247, 310
FaqI GGGAC 1 cut(s) 269
FatI CATG 4 cut(s) 6, 66, 243, 306
FauI CCCGC 1 cut(s) 381
FauNDI CATATG 1 cut(s) 384
FbaI TGATCA 1 cut(s) 129
Fnu4HI GCNGC 4 cut(s) 94, 97, 275, 342
FokI GGATG 3 cut(s) 167, 226, 523
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 4 cut(s) 94, 97, 275, 342
FspBI CTAG 2 cut(s) 167, 465
GluI GCNGC 4 cut(s) 94, 97, 275, 342
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 3 cut(s) 5, 11, 479
HapII CCGG 1 cut(s) 476
HgaI GACGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 4 cut(s) 10, 70, 247, 310
HinfI GANTC 1 cut(s) 461
HpaII CCGG 1 cut(s) 476
HphI GGTGA 4 cut(s) 133, 139, 403, 461
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 3 cut(s) 134, 148, 262
Hpy188III TCNNGA 2 cut(s) 109, 196
Hpy8I GTNNAC 1 cut(s) 394
Hpy99I CGWCG 2 cut(s) 41, 179
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 2 cut(s) 517, 535
HpyCH4IV ACGT 2 cut(s) 136, 177
HpyCH4V TGCA 2 cut(s) 93, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpySE526I ACGT 2 cut(s) 136, 177
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 4 cut(s) 10, 70, 247, 310
KroI GCCGGC 1 cut(s) 475
KroNI GCCGGC 1 cut(s) 477
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 3 cut(s) 129, 157, 192
LmnI GCTCC 3 cut(s) 168, 295, 308
LpnPI CCDG 7 cut(s) 7, 25, 87, 181, 275, 489, 493
Lsp1109I GCAGC 3 cut(s) 105, 108, 286
MaeI CTAG 2 cut(s) 167, 465
MaeII ACGT 2 cut(s) 136, 177
MaeIII GTNAC 2 cut(s) 14, 139
MalI GATC 3 cut(s) 131, 159, 194
MboI GATC 3 cut(s) 129, 157, 192
MboII GAAGA 2 cut(s) 211, 385
MhlI GDGCHC 1 cut(s) 256
MlsI TGGCCA 2 cut(s) 5, 11
MluCI AATT 3 cut(s) 116, 485, 500
MluNI TGGCCA 2 cut(s) 5, 11
MlyI GAGTC 1 cut(s) 470
MnlI CCTC 9 cut(s) 115, 145, 154, 217, 286, 331, 424, 501, 547
Mox20I TGGCCA 2 cut(s) 5, 11
MroNI GCCGGC 1 cut(s) 475
MroXI GAANNNNTTC 1 cut(s) 267
MscI TGGCCA 2 cut(s) 5, 11
MslI CAYNNNNRTG 1 cut(s) 401
Msp20I TGGCCA 2 cut(s) 5, 11
MspA1I CMGCKG 1 cut(s) 277
MspI CCGG 1 cut(s) 476
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 338
NaeI GCCGGC 1 cut(s) 477
NcoI CCATGG 3 cut(s) 6, 243, 306
NdeI CATATG 1 cut(s) 384
NdeII GATC 3 cut(s) 129, 157, 192
NgoMIV GCCGGC 1 cut(s) 475
NlaIII CATG 4 cut(s) 10, 70, 247, 310
NlaIV GGNNCC 3 cut(s) 72, 164, 351
NmuCI GTSAC 2 cut(s) 14, 139
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PdiI GCCGGC 1 cut(s) 477
PdmI GAANNNNTTC 1 cut(s) 267
PkrI GCNGC 4 cut(s) 95, 98, 276, 343
PleI GAGTC 1 cut(s) 469
PpsI GAGTC 1 cut(s) 469
PspN4I GGNNCC 3 cut(s) 72, 164, 351
PvuII CAGCTG 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 401
SatI GCNGC 4 cut(s) 94, 97, 275, 342
Sau3AI GATC 3 cut(s) 129, 157, 192
SchI GAGTC 1 cut(s) 470
SduI GDGCHC 1 cut(s) 256
SetI ASST 9 cut(s) 87, 139, 146, 180, 209, 279, 305, 355, 470
SmiMI CAYNNNNRTG 1 cut(s) 401
Sse9I AATT 3 cut(s) 116, 485, 500
SsiI CCGC 4 cut(s) 125, 341, 388, 447
SspMI CTAG 2 cut(s) 167, 465
StyI CCWWGG 3 cut(s) 6, 243, 306
TaaI ACNGT 2 cut(s) 517, 535
TaiI ACGT 2 cut(s) 139, 180
TaqI TCGA 3 cut(s) 213, 399, 491
TasI AATT 3 cut(s) 116, 485, 500
TauI GCSGC 1 cut(s) 344
TscAI CASTG 3 cut(s) 19, 294, 540
TseFI GTSAC 2 cut(s) 14, 139
TseI GCWGC 3 cut(s) 93, 96, 274
Tsp45I GTSAC 2 cut(s) 14, 139
TspDTI ATGAA 1 cut(s) 55
TspRI CASTG 3 cut(s) 19, 294, 540
XapI RAATTY 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 2 cut(s) 167, 465
ZraI GACGTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.