Rh7DG443900

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000735
Physical Location & Seq
Forward (+)
62992452 .. 62994246
1795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG443900.1

Sequence Viewer

Length: 696 bp
ATGGATCAGGAAATTGAGAATACTAGCACTGGTTGCTGGTTGGAAAAGATCGAAGATCCTGAAATCGAGTTGGGTTGCACCAAGTTGGTGATGGAGATCGAGGCCACAATTACATGCCCCGGCAGATATTCGGAGGAGGAAGAAGAAGATGAAGATGATGAGGACTACTCCGATATCAATCAAATTCTAGCACAAGACAGCAACAGTTATGAGGACACACTCGAACTTAACTTCTTGATGGACGACAACAATGGAACCGCCCCGACTCGATTTATGAAGGAACAAATATCTAGCAAGCTCTTCGACTTGAATGTTCCCTTTAGGGATCATGAATCCATAGCAGACAAAATATTGAACGATGTCTTTGCGGTGGTAAGAGATCCTAGTCGTAAAGCCGACGGCAAGATTTTGTGTATGAGGGCCGTCATCCATGCTTTTGGGGAAGAATTGGGAGATGAGGATATGGATATTGACCCTAAATTTGTGCCTGCAAGTAAATCGGCTTTGGAGAAATTGGAGAGGGCGATCGTTGTCCAAGTCTCAACAATGTGTTCGGTATGTAGGGAGGAGCTTGTGGCTGGTTCCGAAGCAACTCGGATGCCGTGTTTGCATATTTACCATGAGAGTTGCATTGTAGAGTGGTTGGGTAAGAGCAAGTACTGCCCACTGTGTCGATATTCCATGCCAAGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

231

Amino Acids

26.21

Weight (kDa)

4.32

Isoelectric Point (pI)

56.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 180 - 225 1.6e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 183 - 225 7e-13 Ring finger domain
zf-C3HC4_2 PF13923 183 - 224 6.7e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 184 - 224 2.3e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 184 - 211 2.7e-06 RING-like zinc finger
zf-RING_UBOX PF13445 184 - 222 3.5e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 258, 368
AclWI GGATC 4 cut(s) 12, 50, 333, 374
AcsI RAATTY 2 cut(s) 183, 479
AfaI GTAC 1 cut(s) 659
AgsI TTSAA 2 cut(s) 310, 355
AluBI AGCT 2 cut(s) 298, 571
AluI AGCT 2 cut(s) 298, 571
Alw26I GTCTC 1 cut(s) 544
AlwI GGATC 4 cut(s) 12, 50, 333, 374
AoxI GGCC 2 cut(s) 102, 420
ApoI RAATTY 2 cut(s) 183, 479
ArsI GACNNNNNNTTYG 2 cut(s) 464, 496
AspS9I GGNCC 1 cut(s) 420
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 100
BccI CCATC 2 cut(s) 85, 232
BceAI ACGGC 3 cut(s) 407, 415, 586
BcgI CGANNNNNNTGC 6 cut(s) 283, 317, 347, 381, 480, 514
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 544
BfaI CTAG 4 cut(s) 24, 188, 291, 384
BmcAI AGTACT 1 cut(s) 659
Bme1390I CCNGG 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 420
BmiI GGNNCC 2 cut(s) 256, 583
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 1 cut(s) 588
BplI GAGNNNNNCTC 2 cut(s) 152, 184
BpuMI CCSGG 1 cut(s) 120
BsaBI GATNNNNATC 2 cut(s) 95, 177
BsaJI CCNNGG 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 34
Bse8I GATNNNNATC 2 cut(s) 95, 177
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 2 cut(s) 426, 603
BseJI GATNNNNATC 2 cut(s) 95, 177
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 2 cut(s) 149, 581
Bsh1285I CGRYCG 1 cut(s) 528
BshFI GGCC 2 cut(s) 104, 422
BsiEI CGRYCG 1 cut(s) 528
BsiSI CCGG 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 544
BsnI GGCC 2 cut(s) 104, 422
Bsp143I GATC 7 cut(s) 4, 48, 55, 96, 325, 379, 525
BspACI CCGC 2 cut(s) 258, 368
BspANI GGCC 2 cut(s) 104, 422
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 256, 583
BspPI GGATC 4 cut(s) 12, 50, 333, 374
BspQI GCTCTTC 1 cut(s) 305
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 7 cut(s) 4, 48, 55, 96, 325, 379, 525
Bst4CI ACNGT 2 cut(s) 206, 669
Bst6I CTCTTC 1 cut(s) 305
BstAPI GCANNNNNTGC 2 cut(s) 33, 660
BstC8I GCNNGC 2 cut(s) 296, 489
BstF5I GGATG 2 cut(s) 426, 603
BstKTI GATC 7 cut(s) 7, 51, 58, 99, 328, 382, 528
BstMAI GTCTC 1 cut(s) 544
BstMBI GATC 7 cut(s) 4, 48, 55, 96, 325, 379, 525
BstMCI CGRYCG 1 cut(s) 528
BstMWI GCNNNNNNNGC 3 cut(s) 33, 607, 660
BstNSI RCATGY 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 118
BstX2I RGATCY 2 cut(s) 55, 379
BstXI CCANNNNNNTGG 1 cut(s) 437
BstYI RGATCY 2 cut(s) 55, 379
BsuRI GGCC 2 cut(s) 104, 422
BtsCI GGATG 2 cut(s) 426, 603
BtsIMutI CAGTG 2 cut(s) 27, 665
Cac8I GCNNGC 2 cut(s) 296, 489
CciI TCATGA 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 420
Csp6I GTAC 1 cut(s) 658
CviAII CATG 5 cut(s) 114, 329, 431, 620, 682
CviJI RGCY 7 cut(s) 104, 298, 395, 422, 503, 571, 578
CviKI_1 RGCY 7 cut(s) 104, 298, 395, 422, 503, 571, 578
CviQI GTAC 1 cut(s) 658
DpnI GATC 7 cut(s) 6, 50, 57, 98, 327, 381, 527
DpnII GATC 7 cut(s) 4, 48, 55, 96, 325, 379, 525
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
Eco32I GATATC 1 cut(s) 175
EcoRV GATATC 1 cut(s) 175
FaeI CATG 5 cut(s) 117, 332, 434, 623, 685
FatI CATG 5 cut(s) 113, 328, 430, 619, 681
FokI GGATG 2 cut(s) 413, 610
FspBI CTAG 4 cut(s) 24, 188, 291, 384
HaeIII GGCC 2 cut(s) 104, 422
HapII CCGG 1 cut(s) 120
Hin1II CATG 5 cut(s) 117, 332, 434, 623, 685
HinfI GANTC 2 cut(s) 265, 332
HpaII CCGG 1 cut(s) 120
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 4 cut(s) 133, 172, 586, 597
Hpy188III TCNNGA 4 cut(s) 8, 59, 235, 329
Hpy99I CGWCG 1 cut(s) 401
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 2 cut(s) 206, 669
HpyCH4V TGCA 4 cut(s) 78, 491, 610, 630
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 607, 660
Hsp92II CATG 5 cut(s) 117, 332, 434, 623, 685
Kzo9I GATC 7 cut(s) 4, 48, 55, 96, 325, 379, 525
LguI GCTCTTC 1 cut(s) 305
LmnI GCTCC 1 cut(s) 568
LpnPI CCDG 6 cut(s) 15, 22, 72, 133, 501, 564
LweI GCATC 1 cut(s) 588
MaeI CTAG 4 cut(s) 24, 188, 291, 384
MalI GATC 7 cut(s) 6, 50, 57, 98, 327, 381, 527
MboI GATC 7 cut(s) 4, 48, 55, 96, 325, 379, 525
MboII GAAGA 7 cut(s) 65, 152, 155, 158, 164, 292, 455
MflI RGATCY 2 cut(s) 55, 379
MluCI AATT 6 cut(s) 12, 108, 183, 446, 479, 512
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 9 cut(s) 94, 127, 130, 154, 205, 411, 451, 513, 559
MseI TTAA 1 cut(s) 228
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 33, 607, 660
NciI CCSGG 1 cut(s) 120
NdeII GATC 7 cut(s) 4, 48, 55, 96, 325, 379, 525
NlaIII CATG 5 cut(s) 117, 332, 434, 623, 685
NlaIV GGNNCC 2 cut(s) 256, 583
NspI RCATGY 1 cut(s) 117
PagI TCATGA 1 cut(s) 328
PciSI GCTCTTC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 332
Ple19I CGATCG 1 cut(s) 528
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PspN4I GGNNCC 2 cut(s) 256, 583
PspPI GGNCC 1 cut(s) 420
PsuI RGATCY 2 cut(s) 55, 379
PvuI CGATCG 1 cut(s) 528
RsaI GTAC 1 cut(s) 659
RsaNI GTAC 1 cut(s) 658
SapI GCTCTTC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 228
Sau3AI GATC 7 cut(s) 4, 48, 55, 96, 325, 379, 525
Sau96I GGNCC 1 cut(s) 420
ScaI AGTACT 1 cut(s) 659
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 120
SetI ASST 2 cut(s) 300, 573
SfaNI GCATC 1 cut(s) 588
Sse9I AATT 6 cut(s) 12, 108, 183, 446, 479, 512
SsiI CCGC 2 cut(s) 258, 368
SspI AATATT 1 cut(s) 351
SspMI CTAG 4 cut(s) 24, 188, 291, 384
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 2 cut(s) 206, 669
TaqI TCGA 7 cut(s) 51, 66, 99, 222, 268, 303, 673
TasI AATT 6 cut(s) 12, 108, 183, 446, 479, 512
TatI WGTACW 1 cut(s) 657
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 2 cut(s) 34, 672
TspDTI ATGAA 3 cut(s) 165, 290, 345
TspRI CASTG 2 cut(s) 34, 672
XapI RAATTY 2 cut(s) 183, 479
XceI RCATGY 1 cut(s) 117
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XspI CTAG 4 cut(s) 24, 188, 291, 384
ZrmI AGTACT 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.