Rh5DG541900

Ring finger domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
83377624 .. 83377920
297 bp
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UTR
Exon/CDS
Intron
Rh5DG541900.1

Sequence Viewer

Length: 297 bp
ATGATGATGGGTGAGGTTATATTTGAGCCGGCGAGTAAAATGTCGATTGAGAAGTTGGAGAGGGTGAGAATAGTGGAAGCGTCAACCATGCGTGCGATTTGTGCAGAGGAGATTGTGGTTGGTTCCGAAGAAATTCATATGCTATGTTCGCATTTTTACCATGGCGATTGCATTGTCAAGTTGTTGGAGCAGAGCAAGTTTTGCCCACAATGTCAATATGTTGTGCCTGCAGCTTCTAAGGATGAAACAGGAATACCACTGATGAATAGACATGAGAGAAAAGGTGTTGATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

98

Amino Acids

11.1

Weight (kDa)

5.52

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 32 - 72 1.2e-08 Ring finger domain
zf-C3HC4_2 PF13923 33 - 71 4e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 132
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 132
Asp700I GAANNNNTTC 1 cut(s) 132
AsuHPI GGTGA 2 cut(s) 23, 76
BbvI GCAGC 1 cut(s) 242
BfmI CTRYAG 1 cut(s) 228
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 160
Bse118I RCCGGY 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 247
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 242
BsgI GTGCAG 1 cut(s) 123
BsiSI CCGG 1 cut(s) 29
Bsp19I CCATGG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 124
BspMAI CTGCAG 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 160
BstAPI GCANNNNNTGC 1 cut(s) 201
BstC8I GCNNGC 3 cut(s) 30, 93, 228
BstDEI CTNAG 1 cut(s) 237
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 1 cut(s) 247
BstMWI GCNNNNNNNGC 3 cut(s) 101, 148, 201
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 242
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 3 cut(s) 30, 93, 228
Cfr10I RCCGGY 1 cut(s) 28
CseI GACGC 1 cut(s) 69
CviAII CATG 3 cut(s) 88, 161, 272
CviJI RGCY 2 cut(s) 28, 233
CviKI_1 RGCY 2 cut(s) 28, 233
DdeI CTNAG 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 3 cut(s) 91, 164, 275
FaiI YATR 8 cut(s) 20, 89, 138, 140, 145, 162, 219, 273
FatI CATG 3 cut(s) 87, 160, 271
FauNDI CATATG 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 231
GluI GCNGC 1 cut(s) 231
HapII CCGG 1 cut(s) 29
HgaI GACGC 1 cut(s) 69
Hin1II CATG 3 cut(s) 91, 164, 275
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HpaII CCGG 1 cut(s) 29
HphI GGTGA 2 cut(s) 23, 76
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 127
Hpy8I GTNNAC 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 104, 171, 230
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 148, 201
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 3 cut(s) 91, 164, 275
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 3 cut(s) 42, 234, 240
Lsp1109I GCAGC 1 cut(s) 242
MboII GAAGA 1 cut(s) 140
MluCI AATT 2 cut(s) 132, 292
MmeI TCCRAC 2 cut(s) 36, 165
MnlI CCTC 3 cut(s) 7, 54, 100
MroNI GCCGGC 1 cut(s) 28
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 1 cut(s) 295
MspI CCGG 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 101, 148, 201
NaeI GCCGGC 1 cut(s) 30
NcoI CCATGG 1 cut(s) 160
NdeI CATATG 1 cut(s) 138
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 3 cut(s) 91, 164, 275
NlaIV GGNNCC 1 cut(s) 124
PdiI GCCGGC 1 cut(s) 30
PdmI GAANNNNTTC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 124
PstI CTGCAG 1 cut(s) 232
SaqAI TTAA 1 cut(s) 295
SatI GCNGC 1 cut(s) 231
SetI ASST 3 cut(s) 18, 235, 286
SfcI CTRYAG 1 cut(s) 228
Sse9I AATT 2 cut(s) 132, 292
StyI CCWWGG 1 cut(s) 160
TaqI TCGA 1 cut(s) 44
TasI AATT 2 cut(s) 132, 292
Tru1I TTAA 1 cut(s) 295
Tru9I TTAA 1 cut(s) 295
TscAI CASTG 1 cut(s) 264
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 125, 258, 278
TspRI CASTG 1 cut(s) 264
XapI RAATTY 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.