Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000735

Physical Location & Seq

Genomic Coordinates Reverse (-)

26835815 .. 26836501

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G011960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGATCAGGAAATTGAGAATTCTAGCACTGATTGCTGGTTGGAAAGGATTGACGATTCTAAAATCGAGTTGGGTGGCACCAAGTTGGTGATGGAGATCGAAGCCACAATTACATGTCCCAGCGGATATCCGACGGAAGAAGAAGATGATGAGGACTACTCCGATATCAATCGAATTCTAGCACAAGACAGCAACAGTTACGAGGGCACACTCGAACTTAACTTGTTGACGGAAAACAACAGTGGAACTGCCTCGACTCGATTTATGAGGGAAGAAATATCTAAGAAGCTCTTCGACTTGAATGTTCCCTTTAGGGATCATGAATCCATAGCAGAAAAAATATTGAACGATGTCTTTGCGGTGACAAGAGATCCTAGTCGTAAAGCCGACGGCAAGATTTTTCATATGAGGGCTGTTATCCATGTTTTTGGGGAAGAATTGGGAGATGAGGATATGGAAATTGAGCCTTACTTTGTGCCTGCAAGTAAATCGGCAATGGAGAAGTTGGAGAAGGGGATCGTTGTCCAAGTCTCGACAATGTGTTCGGTATGTAGGGAGGACATGATGGCTGGTTCCGAAGCAACTCGGATGCCGTGTTTGCATCTTTACCATGAGAGCTGCATTGTAGAATGGTTGGGGAAGAGCAAGTACTGCCCACTGTGTCGATATTCCATGCCAAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

228

Amino Acids

25.89

Weight (kDa)

4.51

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	177 - 222	4.2e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	180 - 222	1.1e-12	Ring finger domain
zf-C3HC4_2	PF13923	180 - 221	8.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	181 - 221	2.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	181 - 208	6.6e-06	RING-like zinc finger
zf-RING_UBOX	PF13445	181 - 219	6.6e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000735)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31481 FvH4_6g45550 FvH4_6g45551 FvH4_6g45560
malus_domestica	MD02G1237700.v1.1 MD02G1241100.v1.1 MD07G1074200.v1.1 MD07G1074300.v1.1 MD07G1077200.v1.1 MD09G1258700.v1.1
prunus_persica	Prupe.2G094100_v2.0.a1 Prupe.2G096300_v2.0.a1 Prupe.2G096400_v2.0.a1 Prupe.5G061200_v2.0.a1 Prupe.5G067900_v2.0.a1
pyrus_communis	pycom02g20840 pycom07g05830 pycom07g06070 pycom07g06080
rosa_chinensis	RchiOBHm_Chr1g0336601 RchiOBHm_Chr2g0163491 RchiOBHm_Chr5g0058471 RchiOBHm_Chr7g0236931
rosa_laevigata	RLG00000001047 RLG00000021406 RLG00000029344 RLG00000035224 RLG00000035225 RLG00000035226 RLG00000036678
rosa_multiflora	Rmu_co8414615.1_g000001 Rmu_sc0000367.1_g000124 Rmu_sc0000367.1_g000131 Rmu_sc0001969.1_g000007 Rmu_sc0004006.1_g000003 Rmu_sc0005576.1_g000003 Rmu_sc0008383.1_g000007 Rmu_sc0013124.1_g000008 Rmu_sc0024363.1_g000004 Rmu_ssc0000335.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004750 Rroxscaffold_1G00022030 Rroxscaffold_1G00022050 Rroxscaffold_1G00022060 Rroxscaffold_2G00087240 Rroxscaffold_2G00087270 Rroxscaffold_3G00224680
rosa_rugosa	Rorug04G0097000 Rorug05G0315100 Rorug05G0315200 Rorug05G0315400 Rorug05G0453100 Rorug07G0301000
rosa_samantha	Rh1DG154700 Rh2AG570200 Rh2BG582400 Rh2CG552200 Rh4CG163700 Rh5AG381500 Rh5BG393100 Rh5CG417300 Rh5DG408300 Rh5DG408400 Rh5DG541900 Rh7AG456000 Rh7BG427300 Rh7CG474800 Rh7DG443900
rosa_wichuraiana	Rw1G011960 Rw2G047210 Rw5G035950 Rw7G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AciI	CCGC	2 cut(s)	123, 359
AclWI	GGATC	4 cut(s)	12, 324, 365, 524
AcsI	RAATTY	2 cut(s)	19, 174
AfaI	GTAC	1 cut(s)	650
AflIII	ACRYGT	1 cut(s)	113
AgsI	TTSAA	2 cut(s)	301, 346
AluBI	AGCT	2 cut(s)	289, 618
AluI	AGCT	2 cut(s)	289, 618
Alw26I	GTCTC	1 cut(s)	535
AlwI	GGATC	4 cut(s)	12, 324, 365, 524
ApeKI	GCWGC	1 cut(s)	618
ApoI	RAATTY	2 cut(s)	19, 174
ArsI	GACNNNNNNTTYG	2 cut(s)	526, 558
Asp700I	GAANNNNTTC	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	100, 373
BaeGI	GKGCMC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	77
BarI	GAAGNNNNNNTAC	2 cut(s)	632, 664
BbvI	GCAGC	1 cut(s)	605
BccI	CCATC	2 cut(s)	85, 559
BceAI	ACGGC	2 cut(s)	406, 577
BcgI	CGANNNNNNTGC	4 cut(s)	338, 372, 471, 505
BcoDI	GTCTC	1 cut(s)	535
BfaI	CTAG	3 cut(s)	24, 179, 375
BisI	GCNGC	1 cut(s)	619
BlsI	GCNGC	1 cut(s)	620
BmcAI	AGTACT	1 cut(s)	650
BmiI	GGNNCC	2 cut(s)	79, 574
BmsI	GCATC	2 cut(s)	579, 610
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BsaBI	GATNNNNATC	2 cut(s)	95, 168
Bse3DI	GCAATG	1 cut(s)	501
Bse8I	GATNNNNATC	2 cut(s)	95, 168
BseGI	GGATG	1 cut(s)	594
BseJI	GATNNNNATC	2 cut(s)	95, 168
BseMI	GCAATG	1 cut(s)	501
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	605
BseYI	CCCAGC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	5 cut(s)	4, 96, 316, 370, 516
BspACI	CCGC	2 cut(s)	123, 359
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	79, 574
BspPI	GGATC	4 cut(s)	12, 324, 365, 524
BspQI	GCTCTTC	2 cut(s)	296, 635
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	501
BssMI	GATC	5 cut(s)	4, 96, 316, 370, 516
Bst4CI	ACNGT	3 cut(s)	197, 242, 660
Bst6I	CTCTTC	2 cut(s)	296, 635
BstAPI	GCANNNNNTGC	2 cut(s)	33, 651
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	594
BstKTI	GATC	5 cut(s)	7, 99, 319, 373, 519
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	5 cut(s)	4, 96, 316, 370, 516
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 598, 651
BstNSI	RCATGY	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	605
BstX2I	RGATCY	1 cut(s)	370
BstXI	CCANNNNNNTGG	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	594
BtsIMutI	CAGTG	3 cut(s)	27, 247, 656
Cac8I	GCNNGC	1 cut(s)	480
CciI	TCATGA	1 cut(s)	319
Csp6I	GTAC	1 cut(s)	649
CviAII	CATG	6 cut(s)	114, 320, 422, 562, 611, 673
CviJI	RGCY	7 cut(s)	104, 289, 386, 413, 466, 569, 618
CviKI_1	RGCY	7 cut(s)	104, 289, 386, 413, 466, 569, 618
CviQI	GTAC	1 cut(s)	649
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	5 cut(s)	6, 98, 318, 372, 518
DpnII	GATC	5 cut(s)	4, 96, 316, 370, 516
Eam1104I	CTCTTC	2 cut(s)	296, 635
EarI	CTCTTC	2 cut(s)	296, 635
Eco32I	GATATC	2 cut(s)	128, 166
EcoRI	GAATTC	2 cut(s)	19, 174
EcoRV	GATATC	2 cut(s)	128, 166
FaeI	CATG	6 cut(s)	117, 323, 425, 565, 614, 676
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	6 cut(s)	113, 319, 421, 561, 610, 672
FauNDI	CATATG	1 cut(s)	405
Fnu4HI	GCNGC	1 cut(s)	619
FokI	GGATG	1 cut(s)	601
Fsp4HI	GCNGC	1 cut(s)	619
FspBI	CTAG	3 cut(s)	24, 179, 375
GluI	GCNGC	1 cut(s)	619
GsaI	CCCAGC	1 cut(s)	123
Hin1II	CATG	6 cut(s)	117, 323, 425, 565, 614, 676
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HinfI	GANTC	3 cut(s)	56, 256, 323
HphI	GGTGA	2 cut(s)	100, 373
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	4 cut(s)	132, 163, 577, 588
Hpy188III	TCNNGA	3 cut(s)	8, 320, 532
Hpy8I	GTNNAC	1 cut(s)	228
Hpy99I	CGWCG	2 cut(s)	136, 392
HpyAV	CCTTC	1 cut(s)	505
HpyCH4III	ACNGT	3 cut(s)	197, 242, 660
HpyCH4V	TGCA	3 cut(s)	482, 601, 621
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 598, 651
HpyF3I	CTNAG	1 cut(s)	282
Hsp92II	CATG	6 cut(s)	117, 323, 425, 565, 614, 676
Kzo9I	GATC	5 cut(s)	4, 96, 316, 370, 516
LguI	GCTCTTC	2 cut(s)	296, 635
LpnPI	CCDG	4 cut(s)	22, 133, 492, 555
Lsp1109I	GCAGC	1 cut(s)	605
LweI	GCATC	2 cut(s)	579, 610
MaeI	CTAG	3 cut(s)	24, 179, 375
MaeIII	GTNAC	2 cut(s)	197, 361
MalI	GATC	5 cut(s)	6, 98, 318, 372, 518
MboI	GATC	5 cut(s)	4, 96, 316, 370, 516
MboII	GAAGA	7 cut(s)	149, 152, 155, 283, 284, 446, 652
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	6 cut(s)	12, 19, 108, 174, 437, 459
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	3 cut(s)	21, 155, 486
MnlI	CCTC	7 cut(s)	145, 196, 261, 262, 402, 442, 550
MroXI	GAANNNNTTC	1 cut(s)	290
MseI	TTAA	2 cut(s)	219, 685
MspA1I	CMGCKG	1 cut(s)	123
MwoI	GCNNNNNNNGC	3 cut(s)	33, 598, 651
NdeI	CATATG	1 cut(s)	405
NdeII	GATC	5 cut(s)	4, 96, 316, 370, 516
NlaIII	CATG	6 cut(s)	117, 323, 425, 565, 614, 676
NlaIV	GGNNCC	2 cut(s)	79, 574
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	1 cut(s)	117
PagI	TCATGA	1 cut(s)	319
PciI	ACATGT	1 cut(s)	113
PciSI	GCTCTTC	2 cut(s)	296, 635
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	2 cut(s)	56, 323
PkrI	GCNGC	1 cut(s)	620
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PscI	ACATGT	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	79, 574
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	1 cut(s)	650
RsaNI	GTAC	1 cut(s)	649
SapI	GCTCTTC	2 cut(s)	296, 635
SaqAI	TTAA	2 cut(s)	219, 685
SatI	GCNGC	1 cut(s)	619
Sau3AI	GATC	5 cut(s)	4, 96, 316, 370, 516
ScaI	AGTACT	1 cut(s)	650
SchI	GAGTC	1 cut(s)	250
SduI	GDGCHC	1 cut(s)	209
SetI	ASST	2 cut(s)	291, 620
SfaNI	GCATC	2 cut(s)	579, 610
Sse9I	AATT	6 cut(s)	12, 19, 108, 174, 437, 459
SsiI	CCGC	2 cut(s)	123, 359
SspI	AATATT	1 cut(s)	342
SspMI	CTAG	3 cut(s)	24, 179, 375
TaaI	ACNGT	3 cut(s)	197, 242, 660
TaqI	TCGA	9 cut(s)	66, 99, 172, 213, 254, 259, 294, 533, 664
TasI	AATT	6 cut(s)	12, 19, 108, 174, 437, 459
TatI	WGTACW	1 cut(s)	648
TfiI	GAWTC	2 cut(s)	56, 323
Tru1I	TTAA	2 cut(s)	219, 685
Tru9I	TTAA	2 cut(s)	219, 685
TscAI	CASTG	3 cut(s)	34, 247, 663
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	618
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	2 cut(s)	336, 392
TspGWI	ACGGA	2 cut(s)	149, 245
TspRI	CASTG	3 cut(s)	34, 247, 663
XapI	RAATTY	2 cut(s)	19, 174
XceI	RCATGY	1 cut(s)	117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	290
XspI	CTAG	3 cut(s)	24, 179, 375
ZrmI	AGTACT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.