Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000735

Physical Location & Seq

Genomic Coordinates Reverse (-)

15172209 .. 15172913

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G096300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAGAGGCGAAGCGAAGTCTCCTGCTGCTGCCGGTTATCTACATTAGCCGTGATTGAGCCTGAAACTGACTTGCCATGTACCCAATTCTTGATCACTGTCAAGTCCACGACATTTACTTTTAATCACGCCTCGGATGAAGAAAACGACGCCGTTTCACCGCCCACTTCAGAATACTACTCGCACGAGCTCCAACTTGACCTACTGATGGACGAAAATGCGTCGAGGGCAAAGCTCGCCGAGGCTCTGCTTTCCGAGCTGCATTGCCCGCCGGAGCTCTGCGCCGCCATGGTGGATAAGGTAGCAAACGGCGCCGTTGCGGAAGAGGCTAGTTCCCGCCCTTTCTCGGACTTCATGCTCGTTCACATCGAGGCGTGCCTCGATGTTTTCGTCGAGCAGTTCGGCGGCTCCGAGGAGGAGGAGGCGACCGCCCCGAAATTCGTGCCGGCGAGCAGGGCGGCGATTTCGAAGTTGGAGACGGCGACGGTTGAAGAATCGGCGGTGTGCGCGGTTTGTCTGGAGGAGATGGCCGTTGGATCGGACTCCACGTGTATGCCGTGCTCGCATCTTTATCACCGGGGCTGCATTGTGGAGTGGCTGCAGAAGAGCAGGGTTTGCCCGATGTGTCGGTTTTCTCTGCCTGCCGATCTGTCGGGGCGCTGGTCGGGTCGGCAAACCGGATCTTCTATTTTGTTGCCCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_3 zf-RING_2

Protein Analysis

235

Amino Acids

25.57

Weight (kDa)

4.57

Isoelectric Point (pI)

67.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000735)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31481 FvH4_6g45550 FvH4_6g45551 FvH4_6g45560
malus_domestica	MD02G1237700.v1.1 MD02G1241100.v1.1 MD07G1074200.v1.1 MD07G1074300.v1.1 MD07G1077200.v1.1 MD09G1258700.v1.1
prunus_persica	Prupe.2G094100_v2.0.a1 Prupe.2G096300_v2.0.a1 Prupe.2G096400_v2.0.a1 Prupe.5G061200_v2.0.a1 Prupe.5G067900_v2.0.a1
pyrus_communis	pycom02g20840 pycom07g05830 pycom07g06070 pycom07g06080
rosa_chinensis	RchiOBHm_Chr1g0336601 RchiOBHm_Chr2g0163491 RchiOBHm_Chr5g0058471 RchiOBHm_Chr7g0236931
rosa_laevigata	RLG00000001047 RLG00000021406 RLG00000029344 RLG00000035224 RLG00000035225 RLG00000035226 RLG00000036678
rosa_multiflora	Rmu_co8414615.1_g000001 Rmu_sc0000367.1_g000124 Rmu_sc0000367.1_g000131 Rmu_sc0001969.1_g000007 Rmu_sc0004006.1_g000003 Rmu_sc0005576.1_g000003 Rmu_sc0008383.1_g000007 Rmu_sc0013124.1_g000008 Rmu_sc0024363.1_g000004 Rmu_ssc0000335.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004750 Rroxscaffold_1G00022030 Rroxscaffold_1G00022050 Rroxscaffold_1G00022060 Rroxscaffold_2G00087240 Rroxscaffold_2G00087270 Rroxscaffold_3G00224680
rosa_rugosa	Rorug04G0097000 Rorug05G0315100 Rorug05G0315200 Rorug05G0315400 Rorug05G0453100 Rorug07G0301000
rosa_samantha	Rh1DG154700 Rh2AG570200 Rh2BG582400 Rh2CG552200 Rh4CG163700 Rh5AG381500 Rh5BG393100 Rh5CG417300 Rh5DG408300 Rh5DG408400 Rh5DG541900 Rh7AG456000 Rh7BG427300 Rh7CG474800 Rh7DG443900
rosa_wichuraiana	Rw1G011960 Rw2G047210 Rw5G035950 Rw7G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	311
AccII	CGCG	1 cut(s)	509
AclWI	GGATC	2 cut(s)	544, 688
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	1 cut(s)	437
AcuI	CTGAAG	1 cut(s)	153
AcvI	CACGTG	1 cut(s)	549
AcyI	GRCGYC	2 cut(s)	150, 312
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	2 cut(s)	208, 346
AflIII	ACRYGT	1 cut(s)	548
AgsI	TTSAA	1 cut(s)	491
AluBI	AGCT	4 cut(s)	190, 235, 259, 277
AluI	AGCT	4 cut(s)	190, 235, 259, 277
Alw21I	GWGCWC	3 cut(s)	192, 279, 563
Alw26I	GTCTC	2 cut(s)	25, 470
AlwI	GGATC	2 cut(s)	544, 688
AoxI	GGCC	1 cut(s)	528
ApeKI	GCWGC	5 cut(s)	27, 30, 259, 582, 598
ApoI	RAATTY	1 cut(s)	437
AspLEI	GCGC	4 cut(s)	284, 314, 509, 660
AsuC2I	CCSGG	1 cut(s)	578
AsuHPI	GGTGA	2 cut(s)	150, 566
AsuII	TTCGAA	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	311
BanII	GRGCYC	2 cut(s)	192, 279
BauI	CACGAG	1 cut(s)	185
BbrPI	CACGTG	1 cut(s)	549
Bbv12I	GWGCWC	3 cut(s)	192, 279, 563
BbvI	GCAGC	5 cut(s)	14, 17, 246, 569, 585
BccI	CCATC	2 cut(s)	202, 520
BceAI	ACGGC	7 cut(s)	35, 137, 299, 325, 495, 515, 541
BcgI	CGANNNNNNTGC	2 cut(s)	424, 458
BclI	TGATCA	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	578
BcoDI	GTCTC	2 cut(s)	25, 470
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	599
BfoI	RGCGCY	2 cut(s)	315, 661
BisI	GCNGC	8 cut(s)	28, 31, 260, 285, 406, 459, 583, 599
BlsI	GCNGC	8 cut(s)	29, 32, 261, 286, 407, 460, 584, 600
Bme1390I	CCNGG	1 cut(s)	578
BmiI	GGNNCC	2 cut(s)	313, 409
BmrFI	CCNGG	1 cut(s)	578
BmsI	GCATC	1 cut(s)	574
BpmI	CTGGAG	1 cut(s)	539
Bpu14I	TTCGAA	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	578
BsaAI	YACGTR	1 cut(s)	549
BsaHI	GRCGYC	2 cut(s)	150, 312
BsaJI	CCNNGG	5 cut(s)	132, 240, 288, 411, 577
BsaWI	WCCGGW	1 cut(s)	677
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 346
Bse118I	RCCGGY	2 cut(s)	33, 445
Bse3DI	GCAATG	1 cut(s)	262
BseDI	CCNNGG	5 cut(s)	132, 240, 288, 411, 577
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	2 cut(s)	208, 346
BseMI	GCAATG	1 cut(s)	262
BseRI	GAGGAG	4 cut(s)	428, 431, 434, 536
BseXI	GCAGC	5 cut(s)	14, 17, 246, 569, 585
Bsh1236I	CGCG	1 cut(s)	509
Bsh1285I	CGRYCG	1 cut(s)	429
BshFI	GGCC	1 cut(s)	530
BshNI	GGYRCC	1 cut(s)	311
BsiEI	CGRYCG	1 cut(s)	429
BsiHKAI	GWGCWC	3 cut(s)	192, 279, 563
BsiSI	CCGG	5 cut(s)	34, 272, 446, 577, 678
BslI	CCNNNNNNNGG	2 cut(s)	208, 346
BsmAI	GTCTC	2 cut(s)	25, 470
BsmBI	CGTCTC	1 cut(s)	470
BsnI	GGCC	1 cut(s)	530
Bsp119I	TTCGAA	1 cut(s)	467
Bsp1286I	GDGCHC	3 cut(s)	192, 279, 563
Bsp143I	GATC	4 cut(s)	93, 536, 646, 680
Bsp19I	CCATGG	1 cut(s)	288
BspANI	GGCC	1 cut(s)	530
BspFNI	CGCG	1 cut(s)	509
BspLI	GGNNCC	2 cut(s)	313, 409
BspMAI	CTGCAG	1 cut(s)	603
BspPI	GGATC	2 cut(s)	544, 688
BspQI	GCTCTTC	1 cut(s)	599
BspT104I	TTCGAA	1 cut(s)	467
BspT107I	GGYRCC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	262
BsrFI	RCCGGY	2 cut(s)	33, 445
BssAI	RCCGGY	2 cut(s)	33, 445
BssECI	CCNNGG	5 cut(s)	132, 240, 288, 411, 577
BssMI	GATC	4 cut(s)	93, 536, 646, 680
BssNI	GRCGYC	2 cut(s)	150, 312
BssSI	CACGAG	1 cut(s)	185
BssT1I	CCWWGG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	185
Bst4CI	ACNGT	2 cut(s)	100, 487
Bst6I	CTCTTC	2 cut(s)	318, 599
BstACI	GRCGYC	2 cut(s)	150, 312
BstAPI	GCANNNNNTGC	1 cut(s)	615
BstBAI	YACGTR	1 cut(s)	549
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	7 cut(s)	237, 269, 376, 447, 451, 563, 642
BstDSI	CCRYGG	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	509
BstH2I	RGCGCY	2 cut(s)	315, 661
BstHHI	GCGC	4 cut(s)	284, 314, 509, 660
BstKTI	GATC	4 cut(s)	96, 539, 649, 683
BstMAI	GTCTC	2 cut(s)	25, 470
BstMBI	GATC	4 cut(s)	93, 536, 646, 680
BstMCI	CGRYCG	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	576
BstSFI	CTRYAG	1 cut(s)	599
BstUI	CGCG	1 cut(s)	509
BstV1I	GCAGC	5 cut(s)	14, 17, 246, 569, 585
BstX2I	RGATCY	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	680
BsuRI	GGCC	1 cut(s)	530
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	7 cut(s)	237, 269, 376, 447, 451, 563, 642
CfoI	GCGC	4 cut(s)	284, 314, 509, 660
Cfr10I	RCCGGY	2 cut(s)	33, 445
CseI	GACGC	2 cut(s)	158, 210
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	3 cut(s)	78, 289, 355
CviQI	GTAC	1 cut(s)	81
DinI	GGCGCC	1 cut(s)	313
DpnI	GATC	4 cut(s)	95, 538, 648, 682
DpnII	GATC	4 cut(s)	93, 536, 646, 680
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	2 cut(s)	318, 599
EarI	CTCTTC	2 cut(s)	318, 599
Ecl136II	GAGCTC	2 cut(s)	190, 277
Eco130I	CCWWGG	1 cut(s)	288
Eco24I	GRGCYC	2 cut(s)	192, 279
Eco53kI	GAGCTC	2 cut(s)	190, 277
Eco57I	CTGAAG	1 cut(s)	153
Eco72I	CACGTG	1 cut(s)	549
EcoICRI	GAGCTC	2 cut(s)	190, 277
EcoT14I	CCWWGG	1 cut(s)	288
EcoT38I	GRGCYC	2 cut(s)	192, 279
EgeI	GGCGCC	1 cut(s)	313
EheI	GGCGCC	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	288
Esp3I	CGTCTC	1 cut(s)	470
FaeI	CATG	3 cut(s)	81, 292, 358
FaiI	YATR	4 cut(s)	79, 290, 356, 554
FatI	CATG	3 cut(s)	77, 288, 354
FauI	CCCGC	2 cut(s)	276, 344
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	8 cut(s)	28, 31, 260, 285, 406, 459, 583, 599
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	2 cut(s)	192, 279
Fsp4HI	GCNGC	8 cut(s)	28, 31, 260, 285, 406, 459, 583, 599
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	4 cut(s)	283, 313, 508, 659
GluI	GCNGC	8 cut(s)	28, 31, 260, 285, 406, 459, 583, 599
GsuI	CTGGAG	1 cut(s)	539
HaeII	RGCGCY	2 cut(s)	315, 661
HaeIII	GGCC	1 cut(s)	530
HapII	CCGG	5 cut(s)	34, 272, 446, 577, 678
HgaI	GACGC	2 cut(s)	158, 210
HhaI	GCGC	4 cut(s)	284, 314, 509, 660
Hin1I	GRCGYC	2 cut(s)	150, 312
Hin1II	CATG	3 cut(s)	81, 292, 358
Hin6I	GCGC	4 cut(s)	282, 312, 507, 658
HinP1I	GCGC	4 cut(s)	282, 312, 507, 658
HinfI	GANTC	2 cut(s)	494, 542
HpaII	CCGG	5 cut(s)	34, 272, 446, 577, 678
HphI	GGTGA	2 cut(s)	150, 566
Hpy166II	GTNNAC	2 cut(s)	108, 364
Hpy188I	TCNGA	6 cut(s)	136, 172, 256, 349, 412, 541
Hpy188III	TCNNGA	2 cut(s)	91, 518
Hpy8I	GTNNAC	2 cut(s)	108, 364
Hpy99I	CGWCG	4 cut(s)	152, 226, 395, 487
HpyCH4III	ACNGT	2 cut(s)	100, 487
HpyCH4IV	ACGT	1 cut(s)	548
HpyCH4V	TGCA	3 cut(s)	262, 585, 601
HpySE526I	ACGT	1 cut(s)	548
Hsp92I	GRCGYC	2 cut(s)	150, 312
Hsp92II	CATG	3 cut(s)	81, 292, 358
HspAI	GCGC	4 cut(s)	282, 312, 507, 658
KasI	GGCGCC	1 cut(s)	311
KroI	GCCGGC	1 cut(s)	445
KroNI	GCCGGC	1 cut(s)	447
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	4 cut(s)	93, 536, 646, 680
LguI	GCTCTTC	1 cut(s)	599
LmnI	GCTCC	3 cut(s)	195, 274, 413
Lsp1109I	GCAGC	5 cut(s)	14, 17, 246, 569, 585
LweI	GCATC	1 cut(s)	574
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	1 cut(s)	548
MalI	GATC	4 cut(s)	95, 538, 648, 682
MboI	GATC	4 cut(s)	93, 536, 646, 680
MboII	GAAGA	5 cut(s)	152, 335, 503, 616, 675
MflI	RGATCY	1 cut(s)	680
MhlI	GDGCHC	3 cut(s)	192, 279, 563
MluCI	AATT	2 cut(s)	86, 437
Mly113I	GGCGCC	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	3 cut(s)	217, 453, 514
MroNI	GCCGGC	1 cut(s)	445
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	551
MspI	CCGG	5 cut(s)	34, 272, 446, 577, 678
MspR9I	CCNGG	1 cut(s)	578
MvnI	CGCG	1 cut(s)	509
NaeI	GCCGGC	1 cut(s)	447
NarI	GGCGCC	1 cut(s)	312
NciI	CCSGG	1 cut(s)	578
NcoI	CCATGG	1 cut(s)	288
NdeII	GATC	4 cut(s)	93, 536, 646, 680
NgoMIV	GCCGGC	1 cut(s)	445
NlaIII	CATG	3 cut(s)	81, 292, 358
NlaIV	GGNNCC	2 cut(s)	313, 409
NmeAIII	GCCGAG	1 cut(s)	265
NspV	TTCGAA	1 cut(s)	467
PciSI	GCTCTTC	1 cut(s)	599
PcsI	WCGNNNNNNNCGW	5 cut(s)	366, 387, 408, 545, 554
PdiI	GCCGGC	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	494
PkrI	GCNGC	8 cut(s)	29, 32, 261, 286, 407, 460, 584, 600
PleI	GAGTC	1 cut(s)	536
PluTI	GGCGCC	1 cut(s)	315
PmaCI	CACGTG	1 cut(s)	549
PmlI	CACGTG	1 cut(s)	549
PpsI	GAGTC	1 cut(s)	536
Ppu21I	YACGTR	1 cut(s)	549
Psp124BI	GAGCTC	2 cut(s)	192, 279
PspCI	CACGTG	1 cut(s)	549
PspN4I	GGNNCC	2 cut(s)	313, 409
PstI	CTGCAG	1 cut(s)	603
PsuI	RGATCY	1 cut(s)	680
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	551
SacI	GAGCTC	2 cut(s)	192, 279
SapI	GCTCTTC	1 cut(s)	599
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	8 cut(s)	28, 31, 260, 285, 406, 459, 583, 599
Sau3AI	GATC	4 cut(s)	93, 536, 646, 680
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	1 cut(s)	578
SduI	GDGCHC	3 cut(s)	192, 279, 563
SetI	ASST	7 cut(s)	192, 204, 237, 261, 279, 303, 551
SfaNI	GCATC	1 cut(s)	574
SfcI	CTRYAG	1 cut(s)	599
SfoI	GGCGCC	1 cut(s)	313
SfuI	TTCGAA	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	551
Sse9I	AATT	2 cut(s)	86, 437
SspDI	GGCGCC	1 cut(s)	311
SspMI	CTAG	1 cut(s)	330
SstI	GAGCTC	2 cut(s)	192, 279
StyD4I	CCNGG	1 cut(s)	576
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	100, 487
TaiI	ACGT	1 cut(s)	551
TaqI	TCGA	5 cut(s)	224, 369, 381, 393, 467
TasI	AATT	2 cut(s)	86, 437
TauI	GCSGC	3 cut(s)	287, 408, 461
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	103
TseI	GCWGC	5 cut(s)	27, 30, 259, 582, 598
TspDTI	ATGAA	2 cut(s)	153, 343
TspRI	CASTG	1 cut(s)	103
XapI	RAATTY	1 cut(s)	437
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.