Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000735

Physical Location & Seq

Genomic Coordinates Reverse (-)

63129760 .. 63131727

Gene Structure 1968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG393100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCGTGGTGCCATATTCGACGAGCTTCAACACTTGCAAGTCCCAATGGATGCTCAAAGCTCCATGGTGGACAAGATACTGAGCCAAGCTTTTCAGATGGCAGTGGCACATATTCCTGATGCCAGTCACAAGATTTTGCGTATGGCAGTGGCGCCGGTCAGTATTTGTTTTGTTGATAATGATGATGACGACGATACGGAGGACGATGATGAGACTGAGGATGATAGTGATGATGGTATTGGTTATTACGAGCCTAGGTTTGAGCCGGCAAGTAACTTGTCCCTTGAGAAACTGGAGAGGACGAGAGCCGTAGTGTCAACAATGTGCTCCATTTGTATGGAGGAGATCTTGGTTGGTGCAGAAGCAACTCGTATGCCTTGTTCACAACTATACCTTGAAAGTCGCATAGTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

138

Amino Acids

15.44

Weight (kDa)

4.15

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000735)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31481 FvH4_6g45550 FvH4_6g45551 FvH4_6g45560
malus_domestica	MD02G1237700.v1.1 MD02G1241100.v1.1 MD07G1074200.v1.1 MD07G1074300.v1.1 MD07G1077200.v1.1 MD09G1258700.v1.1
prunus_persica	Prupe.2G094100_v2.0.a1 Prupe.2G096300_v2.0.a1 Prupe.2G096400_v2.0.a1 Prupe.5G061200_v2.0.a1 Prupe.5G067900_v2.0.a1
pyrus_communis	pycom02g20840 pycom07g05830 pycom07g06070 pycom07g06080
rosa_chinensis	RchiOBHm_Chr1g0336601 RchiOBHm_Chr2g0163491 RchiOBHm_Chr5g0058471 RchiOBHm_Chr7g0236931
rosa_laevigata	RLG00000001047 RLG00000021406 RLG00000029344 RLG00000035224 RLG00000035225 RLG00000035226 RLG00000036678
rosa_multiflora	Rmu_co8414615.1_g000001 Rmu_sc0000367.1_g000124 Rmu_sc0000367.1_g000131 Rmu_sc0001969.1_g000007 Rmu_sc0004006.1_g000003 Rmu_sc0005576.1_g000003 Rmu_sc0008383.1_g000007 Rmu_sc0013124.1_g000008 Rmu_sc0024363.1_g000004 Rmu_ssc0000335.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004750 Rroxscaffold_1G00022030 Rroxscaffold_1G00022050 Rroxscaffold_1G00022060 Rroxscaffold_2G00087240 Rroxscaffold_2G00087270 Rroxscaffold_3G00224680
rosa_rugosa	Rorug04G0097000 Rorug05G0315100 Rorug05G0315200 Rorug05G0315400 Rorug05G0453100 Rorug07G0301000
rosa_samantha	Rh1DG154700 Rh2AG570200 Rh2BG582400 Rh2CG552200 Rh4CG163700 Rh5AG381500 Rh5BG393100 Rh5CG417300 Rh5DG408300 Rh5DG408400 Rh5DG541900 Rh7AG456000 Rh7BG427300 Rh7CG474800 Rh7DG443900
rosa_wichuraiana	Rw1G011960 Rw2G047210 Rw5G035950 Rw7G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	8, 151
AcyI	GRCGYC	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	29, 398
AluBI	AGCT	3 cut(s)	25, 60, 89
AluI	AGCT	3 cut(s)	25, 60, 89
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	206
AspA2I	CCTAGG	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	154
AvrII	CCTAGG	1 cut(s)	254
BanI	GGYRCC	2 cut(s)	8, 151
Bbv12I	GWGCWC	1 cut(s)	329
BccI	CCATC	2 cut(s)	91, 227
BceAI	ACGGC	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	155
BglII	AGATCT	1 cut(s)	345
BlnI	CCTAGG	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	10, 153
BmsI	GCATC	2 cut(s)	40, 109
BpmI	CTGGAG	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	63, 254
Bse118I	RCCGGY	2 cut(s)	154, 265
Bse1I	ACTGG	2 cut(s)	123, 297
BseDI	CCNNGG	2 cut(s)	63, 254
BseGI	GGATG	2 cut(s)	55, 226
BseMII	CTCAG	2 cut(s)	71, 207
BseNI	ACTGG	2 cut(s)	123, 297
BseRI	GAGGAG	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	378
BshNI	GGYRCC	2 cut(s)	8, 151
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	2 cut(s)	155, 266
BslFI	GGGAC	2 cut(s)	26, 265
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	2 cut(s)	26, 265
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	345
Bsp19I	CCATGG	1 cut(s)	63
BspCNI	CTCAG	2 cut(s)	72, 208
BspLI	GGNNCC	2 cut(s)	10, 153
BspT107I	GGYRCC	2 cut(s)	8, 151
BsrFI	RCCGGY	2 cut(s)	154, 265
BsrI	ACTGG	2 cut(s)	123, 297
BssAI	RCCGGY	2 cut(s)	154, 265
BssECI	CCNNGG	2 cut(s)	63, 254
BssMI	GATC	1 cut(s)	345
BssNI	GRCGYC	1 cut(s)	152
BssT1I	CCWWGG	2 cut(s)	63, 254
BstACI	GRCGYC	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	2 cut(s)	80, 216
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	55, 226
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	1 cut(s)	348
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	345
BstXI	CCANNNNNNTGG	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	345
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	55, 226
BtsI	GCAGTG	2 cut(s)	108, 153
BtsIMutI	CAGTG	2 cut(s)	108, 153
Cac8I	GCNNGC	1 cut(s)	267
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	2 cut(s)	154, 265
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	7 cut(s)	25, 60, 84, 89, 253, 265, 308
CviKI_1	RGCY	7 cut(s)	25, 60, 84, 89, 253, 265, 308
DdeI	CTNAG	2 cut(s)	80, 216
DinI	GGCGCC	1 cut(s)	153
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
Eco130I	CCWWGG	2 cut(s)	63, 254
EcoT14I	CCWWGG	2 cut(s)	63, 254
EgeI	GGCGCC	1 cut(s)	153
EheI	GGCGCC	1 cut(s)	153
ErhI	CCWWGG	2 cut(s)	63, 254
FaeI	CATG	1 cut(s)	67
FaiI	YATR	8 cut(s)	14, 65, 111, 143, 338, 374, 391, 407
FaqI	GGGAC	2 cut(s)	26, 265
FatI	CATG	1 cut(s)	63
FokI	GGATG	2 cut(s)	62, 233
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	314
HaeII	RGCGCY	1 cut(s)	155
HapII	CCGG	2 cut(s)	155, 266
HhaI	GCGC	1 cut(s)	154
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HindIII	AAGCTT	1 cut(s)	87
HpaII	CCGG	2 cut(s)	155, 266
Hpy166II	GTNNAC	3 cut(s)	70, 318, 383
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	3 cut(s)	70, 318, 383
Hpy99I	CGWCG	2 cut(s)	23, 194
HpyCH4V	TGCA	2 cut(s)	37, 359
HpyF3I	CTNAG	2 cut(s)	80, 216
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	1 cut(s)	67
HspAI	GCGC	1 cut(s)	152
KasI	GGCGCC	1 cut(s)	151
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	345
LmnI	GCTCC	2 cut(s)	65, 332
LpnPI	CCDG	5 cut(s)	129, 136, 168, 278, 279
LweI	GCATC	2 cut(s)	40, 109
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	125, 272
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MflI	RGATCY	1 cut(s)	345
MhlI	GDGCHC	1 cut(s)	329
Mly113I	GGCGCC	1 cut(s)	152
MnlI	CCTC	4 cut(s)	193, 211, 291, 334
MroNI	GCCGGC	1 cut(s)	265
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	2 cut(s)	155, 266
NaeI	GCCGGC	1 cut(s)	267
NarI	GGCGCC	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	1 cut(s)	345
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	2 cut(s)	10, 153
NmuCI	GTSAC	1 cut(s)	125
PdiI	GCCGGC	1 cut(s)	267
PluTI	GGCGCC	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	10, 153
PsrI	GAACNNNNNNTAC	2 cut(s)	364, 396
PsuI	RGATCY	1 cut(s)	345
RseI	CAYNNNNRTG	1 cut(s)	335
Sau3AI	GATC	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	5 cut(s)	27, 62, 91, 260, 396
SfaNI	GCATC	2 cut(s)	40, 109
SfoI	GGCGCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
SspDI	GGCGCC	1 cut(s)	151
SspMI	CTAG	1 cut(s)	255
StyI	CCWWGG	2 cut(s)	63, 254
TaqI	TCGA	1 cut(s)	18
TscAI	CASTG	2 cut(s)	108, 153
TseFI	GTSAC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	125
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	2 cut(s)	108, 153
XmaJI	CCTAGG	1 cut(s)	254
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.