Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000735

Physical Location & Seq

Genomic Coordinates Reverse (-)

73178078 .. 73179003

Gene Structure 926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG552200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGTGGAGAAAGTATTGTTCAAAGCCTTCGAGGCGGCACAGAAACCTAGTCCTTACACCGGTGGGAAGAGACTGCGTATGCGGGTGAACATCGATATGTATGTGCTTGATGACGATGTTGATGAGGACGCAAATGATGGTGGTGGTGGCATTATTGGTGATTATTATGAGCCTAGGTTTATGCCGGCCAGTAAATTGTCGGTTGAGAAACTGGAGAGGACGAGTGTCCAAGTGCCATCAACAGTGTGTTCGGTTTGTATGGAGGAGATTAGTGTTGGTTTCGAAGCAACTAAAATGCCTTGTTCACATCTTTACCATGAGTGCTGCATTGTAGAGTGGCTGCAGAAAAGTGGGGTTTGCCCTTTGTGTAAGTTCCGCATGCCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000153 GO:0000209 GO:0000835 GO:0000836 GO:0002020 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008593 GO:0009056 GO:0009057 GO:0009966 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010646 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0023051 GO:0023052 GO:0030163 GO:0030433 GO:0030968 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034620 GO:0034976 GO:0035264 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040007 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044322 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1902494 GO:1990234 GO:1990381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

129

Amino Acids

14.49

Weight (kDa)

5.18

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	82 - 124	2.5e-12	Ring finger domain
zf-C3HC4_2	PF13923	83 - 123	1.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	83 - 110	4.7e-07	RING-like zinc finger
zf-C3HC4	PF00097	83 - 123	2.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	85 - 124	3e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000735)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31481 FvH4_6g45550 FvH4_6g45551 FvH4_6g45560
malus_domestica	MD02G1237700.v1.1 MD02G1241100.v1.1 MD07G1074200.v1.1 MD07G1074300.v1.1 MD07G1077200.v1.1 MD09G1258700.v1.1
prunus_persica	Prupe.2G094100_v2.0.a1 Prupe.2G096300_v2.0.a1 Prupe.2G096400_v2.0.a1 Prupe.5G061200_v2.0.a1 Prupe.5G067900_v2.0.a1
pyrus_communis	pycom02g20840 pycom07g05830 pycom07g06070 pycom07g06080
rosa_chinensis	RchiOBHm_Chr1g0336601 RchiOBHm_Chr2g0163491 RchiOBHm_Chr5g0058471 RchiOBHm_Chr7g0236931
rosa_laevigata	RLG00000001047 RLG00000021406 RLG00000029344 RLG00000035224 RLG00000035225 RLG00000035226 RLG00000036678
rosa_multiflora	Rmu_co8414615.1_g000001 Rmu_sc0000367.1_g000124 Rmu_sc0000367.1_g000131 Rmu_sc0001969.1_g000007 Rmu_sc0004006.1_g000003 Rmu_sc0005576.1_g000003 Rmu_sc0008383.1_g000007 Rmu_sc0013124.1_g000008 Rmu_sc0024363.1_g000004 Rmu_ssc0000335.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004750 Rroxscaffold_1G00022030 Rroxscaffold_1G00022050 Rroxscaffold_1G00022060 Rroxscaffold_2G00087240 Rroxscaffold_2G00087270 Rroxscaffold_3G00224680
rosa_rugosa	Rorug04G0097000 Rorug05G0315100 Rorug05G0315200 Rorug05G0315400 Rorug05G0453100 Rorug07G0301000
rosa_samantha	Rh1DG154700 Rh2AG570200 Rh2BG582400 Rh2CG552200 Rh4CG163700 Rh5AG381500 Rh5BG393100 Rh5CG417300 Rh5DG408300 Rh5DG408400 Rh5DG541900 Rh7AG456000 Rh7BG427300 Rh7CG474800 Rh7DG443900
rosa_wichuraiana	Rw1G011960 Rw2G047210 Rw5G035950 Rw7G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	35, 82, 376
AcoI	YGGCCR	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgeI	ACCGGT	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	22
Alw26I	GTCTC	1 cut(s)	64
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	324, 340
AsiGI	ACCGGT	1 cut(s)	59
AspA2I	CCTAGG	1 cut(s)	173
AsuHPI	GGTGA	2 cut(s)	97, 170
AsuII	TTCGAA	1 cut(s)	282
AvrII	CCTAGG	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	311, 327
BccI	CCATC	2 cut(s)	131, 244
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	2 cut(s)	48, 174
BfmI	CTRYAG	1 cut(s)	341
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	36, 325, 341
BlnI	CCTAGG	1 cut(s)	173
BlsI	GCNGC	3 cut(s)	37, 326, 342
BoxI	GACNNNNGTC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	233
Bpu14I	TTCGAA	1 cut(s)	282
Bsa29I	ATCGAT	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	173
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse118I	RCCGGY	2 cut(s)	59, 184
Bse1I	ACTGG	2 cut(s)	189, 216
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseNI	ACTGG	2 cut(s)	189, 216
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	311, 327
BshFI	GGCC	1 cut(s)	188
BshTI	ACCGGT	1 cut(s)	59
BshVI	ATCGAT	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	60, 185
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	188
Bsp119I	TTCGAA	1 cut(s)	282
BspACI	CCGC	3 cut(s)	35, 82, 376
BspANI	GGCC	1 cut(s)	188
BspDI	ATCGAT	1 cut(s)	93
BspMAI	CTGCAG	1 cut(s)	345
BspT104I	TTCGAA	1 cut(s)	282
BsrFI	RCCGGY	2 cut(s)	59, 184
BsrI	ACTGG	2 cut(s)	189, 216
BssAI	RCCGGY	2 cut(s)	59, 184
BssECI	CCNNGG	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	186, 380
BstMAI	GTCTC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	382
BstPAI	GACNNNNGTC	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	341
BstV1I	GCAGC	2 cut(s)	311, 327
Bsu15I	ATCGAT	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	188
BsuTUI	ATCGAT	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	2 cut(s)	186, 380
Cfr10I	RCCGGY	2 cut(s)	59, 184
ClaI	ATCGAT	1 cut(s)	93
CseI	GACGC	1 cut(s)	137
CspAI	ACCGGT	1 cut(s)	59
CviAII	CATG	2 cut(s)	317, 379
CviJI	RGCY	4 cut(s)	26, 172, 188, 340
CviKI_1	RGCY	4 cut(s)	26, 172, 188, 340
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	2 cut(s)	320, 382
FaiI	YATR	8 cut(s)	80, 98, 102, 168, 182, 260, 318, 380
FatI	CATG	2 cut(s)	316, 378
FauI	CCCGC	1 cut(s)	75
Fnu4HI	GCNGC	3 cut(s)	36, 325, 341
Fsp4HI	GCNGC	3 cut(s)	36, 325, 341
FspBI	CTAG	2 cut(s)	48, 174
GluI	GCNGC	3 cut(s)	36, 325, 341
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	2 cut(s)	60, 185
HgaI	GACGC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	320, 382
HpaII	CCGG	2 cut(s)	60, 185
HphI	GGTGA	2 cut(s)	97, 170
Hpy166II	GTNNAC	2 cut(s)	88, 305
Hpy8I	GTNNAC	2 cut(s)	88, 305
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	2 cut(s)	327, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	320, 382
KroI	GCCGGC	1 cut(s)	184
KroNI	GCCGGC	1 cut(s)	186
LpnPI	CCDG	4 cut(s)	73, 197, 198, 202
Lsp1109I	GCAGC	2 cut(s)	311, 327
MaeI	CTAG	2 cut(s)	48, 174
MboII	GAAGA	1 cut(s)	79
MluCI	AATT	2 cut(s)	194, 385
MnlI	CCTC	4 cut(s)	25, 118, 210, 256
MroNI	GCCGGC	1 cut(s)	184
MslI	CAYNNNNRTG	1 cut(s)	95
MspI	CCGG	2 cut(s)	60, 185
MwoI	GCNNNNNNNGC	1 cut(s)	32
NaeI	GCCGGC	1 cut(s)	186
NgoMIV	GCCGGC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	320, 382
NspI	RCATGY	1 cut(s)	382
NspV	TTCGAA	1 cut(s)	282
PaeI	GCATGC	1 cut(s)	382
PdiI	GCCGGC	1 cut(s)	186
PinAI	ACCGGT	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	37, 326, 342
PshAI	GACNNNNGTC	1 cut(s)	224
PstI	CTGCAG	1 cut(s)	345
RseI	CAYNNNNRTG	1 cut(s)	95
SatI	GCNGC	3 cut(s)	36, 325, 341
SetI	ASST	2 cut(s)	49, 179
SfcI	CTRYAG	1 cut(s)	341
SfuI	TTCGAA	1 cut(s)	282
SgrAI	CRCCGGYG	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	95
SphI	GCATGC	1 cut(s)	382
Sse9I	AATT	2 cut(s)	194, 385
SsiI	CCGC	3 cut(s)	35, 82, 376
SspMI	CTAG	2 cut(s)	48, 174
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	3 cut(s)	30, 93, 282
TasI	AATT	2 cut(s)	194, 385
TauI	GCSGC	1 cut(s)	38
TscAI	CASTG	1 cut(s)	249
TseI	GCWGC	2 cut(s)	324, 340
TspRI	CASTG	1 cut(s)	249
XceI	RCATGY	1 cut(s)	382
XmaJI	CCTAGG	1 cut(s)	173
XspI	CTAG	2 cut(s)	48, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.