Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000735

Physical Location & Seq

Genomic Coordinates Forward (+)

9317859 .. 9318554

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00087240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCCATGGCCATCAGTGACTACTGGGAAGTGGTGGGCGACACTTTCTGCGACATACTTGTCGCCTTCATGGAACCAGAAAACGAGTTTCTATGCAACAGCACCAAATTGTTGATGCAATTTGAGGTGGTGATCAGACGTGTCACCTCCGATGAGGCGGACGGGCTCCTAGACTACGACCTGCAAGTCCCACTGGAGGAGCGTAGCTCCATTGTGGAGAAAATACTGTTCAAAGCCTTCGAGGCGGCACAGAAACCTAGTCCTTACGCTGGTGGGAAGAGACTGCGTATGCAGGTGAACATCGATATGTATGTGATTGATGACGATGTTGATGAGGACGCAAATAATGGTGGTGGTGGTATTATTGGTGATTATTGTGAGCCTAGGTTTATGCCGGCCAGTAAATTGTCGATTGAGAAACTGGAGAGGACGAGTGTCCAAGTGCCATCAACAGTGTGTTCGGTTTGTATGGAGGAGATTAGGGTTGGTTTCGAAGCAACTAAAATGCCTTGTTCACATCTTTATCATGAGTGCTGCATTGTAGAGTGGCTGCAGAAAAGTGGGGTTTGCCCTTTGTGTAAGTTCCGCATGCCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000153 GO:0000209 GO:0000835 GO:0000836 GO:0002020 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008593 GO:0009056 GO:0009057 GO:0009966 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010646 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0023051 GO:0023052 GO:0030163 GO:0030433 GO:0030968 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034620 GO:0034976 GO:0035264 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040007 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044322 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1902494 GO:1990234 GO:1990381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

199

Amino Acids

22.48

Weight (kDa)

4.54

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	152 - 194	8.4e-12	Ring finger domain
zf-C3HC4_2	PF13923	153 - 193	4.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	153 - 180	5.4e-07	RING-like zinc finger
zf-C3HC4	PF00097	153 - 193	7.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	165 - 194	5.4e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000735)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31481 FvH4_6g45550 FvH4_6g45551 FvH4_6g45560
malus_domestica	MD02G1237700.v1.1 MD02G1241100.v1.1 MD07G1074200.v1.1 MD07G1074300.v1.1 MD07G1077200.v1.1 MD09G1258700.v1.1
prunus_persica	Prupe.2G094100_v2.0.a1 Prupe.2G096300_v2.0.a1 Prupe.2G096400_v2.0.a1 Prupe.5G061200_v2.0.a1 Prupe.5G067900_v2.0.a1
pyrus_communis	pycom02g20840 pycom07g05830 pycom07g06070 pycom07g06080
rosa_chinensis	RchiOBHm_Chr1g0336601 RchiOBHm_Chr2g0163491 RchiOBHm_Chr5g0058471 RchiOBHm_Chr7g0236931
rosa_laevigata	RLG00000001047 RLG00000021406 RLG00000029344 RLG00000035224 RLG00000035225 RLG00000035226 RLG00000036678
rosa_multiflora	Rmu_co8414615.1_g000001 Rmu_sc0000367.1_g000124 Rmu_sc0000367.1_g000131 Rmu_sc0001969.1_g000007 Rmu_sc0004006.1_g000003 Rmu_sc0005576.1_g000003 Rmu_sc0008383.1_g000007 Rmu_sc0013124.1_g000008 Rmu_sc0024363.1_g000004 Rmu_ssc0000335.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004750 Rroxscaffold_1G00022030 Rroxscaffold_1G00022050 Rroxscaffold_1G00022060 Rroxscaffold_2G00087240 Rroxscaffold_2G00087270 Rroxscaffold_3G00224680
rosa_rugosa	Rorug04G0097000 Rorug05G0315100 Rorug05G0315200 Rorug05G0315400 Rorug05G0453100 Rorug07G0301000
rosa_samantha	Rh1DG154700 Rh2AG570200 Rh2BG582400 Rh2CG552200 Rh4CG163700 Rh5AG381500 Rh5BG393100 Rh5CG417300 Rh5DG408300 Rh5DG408400 Rh5DG541900 Rh7AG456000 Rh7BG427300 Rh7CG474800 Rh7DG443900
rosa_wichuraiana	Rw1G011960 Rw2G047210 Rw5G035950 Rw7G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	283
AasI	GACNNNNNNGTC	2 cut(s)	59, 185
Acc36I	ACCTGC	2 cut(s)	189, 283
AciI	CCGC	3 cut(s)	158, 245, 586
AcoI	YGGCCR	3 cut(s)	3, 9, 396
AfiI	CCNNNNNNNGG	2 cut(s)	196, 269
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	232
AjiI	CACGTC	1 cut(s)	140
AluBI	AGCT	1 cut(s)	207
AluI	AGCT	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	274
AoxI	GGCC	3 cut(s)	3, 9, 396
ApeKI	GCWGC	2 cut(s)	534, 550
AspA2I	CCTAGG	1 cut(s)	383
AsuHPI	GGTGA	4 cut(s)	136, 142, 307, 380
AsuII	TTCGAA	1 cut(s)	492
AvrII	CCTAGG	1 cut(s)	383
BalI	TGGCCA	2 cut(s)	5, 11
BanII	GRGCYC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	521, 537
BccI	CCATC	2 cut(s)	20, 454
BclI	TGATCA	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	3 cut(s)	170, 258, 384
BfmI	CTRYAG	1 cut(s)	551
BfuAI	ACCTGC	2 cut(s)	189, 283
BglI	GCCNNNNNGGC	1 cut(s)	242
BisI	GCNGC	3 cut(s)	246, 535, 551
BlnI	CCTAGG	1 cut(s)	383
BlsI	GCNGC	3 cut(s)	247, 536, 552
BmgBI	CACGTC	1 cut(s)	140
BmiI	GGNNCC	2 cut(s)	75, 167
BmrI	ACTGGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	105
BmuI	ACTGGG	1 cut(s)	34
BoxI	GACNNNNGTC	1 cut(s)	434
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BpmI	CTGGAG	2 cut(s)	215, 443
Bpu14I	TTCGAA	1 cut(s)	492
Bsa29I	ATCGAT	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	6, 383
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 269
Bse118I	RCCGGY	1 cut(s)	394
Bse1I	ACTGG	4 cut(s)	29, 198, 399, 426
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	6, 383
BseLI	CCNNNNNNNGG	2 cut(s)	196, 269
BseNI	ACTGG	4 cut(s)	29, 198, 399, 426
BseRI	GAGGAG	2 cut(s)	212, 488
BseXI	GCAGC	2 cut(s)	521, 537
BshFI	GGCC	3 cut(s)	5, 11, 398
BshVI	ATCGAT	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	2 cut(s)	196, 269
BsmAI	GTCTC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	3 cut(s)	5, 11, 398
Bsp119I	TTCGAA	1 cut(s)	492
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	132
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	3 cut(s)	158, 245, 586
BspANI	GGCC	3 cut(s)	5, 11, 398
BspDI	ATCGAT	1 cut(s)	303
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	2 cut(s)	75, 167
BspMAI	CTGCAG	1 cut(s)	555
BspMI	ACCTGC	2 cut(s)	189, 283
BspT104I	TTCGAA	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	394
BsrI	ACTGG	4 cut(s)	29, 198, 399, 426
BssAI	RCCGGY	1 cut(s)	394
BssECI	CCNNGG	2 cut(s)	6, 383
BssMI	GATC	1 cut(s)	132
BssT1I	CCWWGG	2 cut(s)	6, 383
Bst4CI	ACNGT	2 cut(s)	228, 454
Bst6I	CTCTTC	1 cut(s)	272
BstBI	TTCGAA	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	396, 590
BstDSI	CCRYGG	1 cut(s)	6
BstKTI	GATC	1 cut(s)	135
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	592
BstPAI	GACNNNNGTC	1 cut(s)	434
BstSFI	CTRYAG	1 cut(s)	551
BstV1I	GCAGC	2 cut(s)	521, 537
Bsu15I	ATCGAT	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	5, 11, 398
BsuTUI	ATCGAT	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	6
BtrI	CACGTC	1 cut(s)	140
BtsIMutI	CAGTG	3 cut(s)	22, 191, 459
BveI	ACCTGC	2 cut(s)	189, 283
Cac8I	GCNNGC	2 cut(s)	396, 590
CciI	TCATGA	1 cut(s)	526
Cfr10I	RCCGGY	1 cut(s)	394
ClaI	ATCGAT	1 cut(s)	303
CseI	GACGC	1 cut(s)	347
CviAII	CATG	4 cut(s)	7, 70, 527, 589
CviJI	RGCY	8 cut(s)	5, 11, 166, 207, 236, 382, 398, 550
CviKI_1	RGCY	8 cut(s)	5, 11, 166, 207, 236, 382, 398, 550
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
DrdI	GACNNNNNNGTC	2 cut(s)	59, 185
DseDI	GACNNNNNNGTC	2 cut(s)	59, 185
EaeI	YGGCCR	3 cut(s)	3, 9, 396
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	6, 383
Eco24I	GRGCYC	1 cut(s)	168
EcoT14I	CCWWGG	2 cut(s)	6, 383
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	2 cut(s)	6, 383
FaeI	CATG	4 cut(s)	10, 73, 530, 592
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	4 cut(s)	6, 69, 526, 588
FbaI	TGATCA	1 cut(s)	132
Fnu4HI	GCNGC	3 cut(s)	246, 535, 551
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	3 cut(s)	246, 535, 551
FspBI	CTAG	3 cut(s)	170, 258, 384
GluI	GCNGC	3 cut(s)	246, 535, 551
GsuI	CTGGAG	2 cut(s)	215, 443
HaeIII	GGCC	3 cut(s)	5, 11, 398
HapII	CCGG	1 cut(s)	395
HgaI	GACGC	1 cut(s)	347
Hin1II	CATG	4 cut(s)	10, 73, 530, 592
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	4 cut(s)	136, 142, 307, 380
Hpy166II	GTNNAC	2 cut(s)	298, 515
Hpy188I	TCNGA	2 cut(s)	137, 151
Hpy188III	TCNNGA	1 cut(s)	527
Hpy8I	GTNNAC	2 cut(s)	298, 515
HpyAV	CCTTC	2 cut(s)	76, 247
HpyCH4III	ACNGT	2 cut(s)	228, 454
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	6 cut(s)	96, 118, 184, 292, 537, 553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	4 cut(s)	10, 73, 530, 592
KroI	GCCGGC	1 cut(s)	394
KroNI	GCCGGC	1 cut(s)	396
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	3 cut(s)	171, 199, 212
LpnPI	CCDG	9 cut(s)	10, 90, 179, 194, 255, 278, 407, 408, 412
Lsp1109I	GCAGC	2 cut(s)	521, 537
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	3 cut(s)	170, 258, 384
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	2 cut(s)	17, 142
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	168
MlsI	TGGCCA	2 cut(s)	5, 11
MluCI	AATT	4 cut(s)	107, 119, 404, 595
MluNI	TGGCCA	2 cut(s)	5, 11
MnlI	CCTC	8 cut(s)	118, 148, 157, 190, 235, 328, 420, 466
Mox20I	TGGCCA	2 cut(s)	5, 11
MroNI	GCCGGC	1 cut(s)	394
MscI	TGGCCA	2 cut(s)	5, 11
MslI	CAYNNNNRTG	1 cut(s)	305
Msp20I	TGGCCA	2 cut(s)	5, 11
MspI	CCGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	242
NaeI	GCCGGC	1 cut(s)	396
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	132
NgoMIV	GCCGGC	1 cut(s)	394
NlaIII	CATG	4 cut(s)	10, 73, 530, 592
NlaIV	GGNNCC	2 cut(s)	75, 167
NmuCI	GTSAC	2 cut(s)	17, 142
NspI	RCATGY	1 cut(s)	592
NspV	TTCGAA	1 cut(s)	492
PaeI	GCATGC	1 cut(s)	592
PagI	TCATGA	1 cut(s)	526
PaqCI	CACCTGC	1 cut(s)	283
PdiI	GCCGGC	1 cut(s)	396
PkrI	GCNGC	3 cut(s)	247, 536, 552
PshAI	GACNNNNGTC	1 cut(s)	434
PspN4I	GGNNCC	2 cut(s)	75, 167
PstI	CTGCAG	1 cut(s)	555
RseI	CAYNNNNRTG	1 cut(s)	305
SatI	GCNGC	3 cut(s)	246, 535, 551
Sau3AI	GATC	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	8 cut(s)	129, 142, 149, 183, 209, 259, 297, 389
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	551
SfuI	TTCGAA	1 cut(s)	492
SmiMI	CAYNNNNRTG	1 cut(s)	305
SphI	GCATGC	1 cut(s)	592
Sse9I	AATT	4 cut(s)	107, 119, 404, 595
SsiI	CCGC	3 cut(s)	158, 245, 586
SspMI	CTAG	3 cut(s)	170, 258, 384
StyI	CCWWGG	2 cut(s)	6, 383
TaaI	ACNGT	2 cut(s)	228, 454
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	4 cut(s)	240, 303, 410, 492
TasI	AATT	4 cut(s)	107, 119, 404, 595
TauI	GCSGC	1 cut(s)	248
TscAI	CASTG	3 cut(s)	22, 198, 459
TseFI	GTSAC	2 cut(s)	17, 142
TseI	GCWGC	2 cut(s)	534, 550
Tsp45I	GTSAC	2 cut(s)	17, 142
TspDTI	ATGAA	1 cut(s)	58
TspRI	CASTG	3 cut(s)	22, 198, 459
XceI	RCATGY	1 cut(s)	592
XmaJI	CCTAGG	1 cut(s)	383
XspI	CTAG	3 cut(s)	170, 258, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.