Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000367.1

Orthogroup ID

OG0000735

Physical Location & Seq

Genomic Coordinates Reverse (-)

617313 .. 617954

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000367.1_g000131.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atggctactgaaaattggcaagtggtgggtgacatcacctgcaacccaaaatacctaggtcttgttcaacctgaaaaggagctgccaaacaccaaattcttgatggatttcaatgtcaagatgaggcgcgcgcagtctactgtattggaggatgaagaagaaattgtagaagagaagaatctgcggtcagtcgaacttgagtacaatccacatagcatgtgggttgccataaataaagagcttcaagacctgcaaattccaatccaagttcgtgcagccattgaagatccaatactcaagggaaccagagtcgcacgagccgatagctcttatgacgctcgcaagtatctgcatatggaggtggctatcgattttcgtgttggcgtttttgatggtattagtgaatatgagcctgcgtttgtgccggcaagtgaagcgtccattaagaaactggggaagacaagagctgaagtgtcgtcgacaatgtgcacggtttgtatggaggagatgatggttggctcggaagcgactcgtatgccttgttcccatctttaccatgacaattgcattgtagagtggctgcagaaaagtggcgtttgcccatcctgtaagttccgcatgcccactgatgatgatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

213

Amino Acids

24.27

Weight (kDa)

4.88

Isoelectric Point (pI)

53.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000735)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31481 FvH4_6g45550 FvH4_6g45551 FvH4_6g45560
malus_domestica	MD02G1237700.v1.1 MD02G1241100.v1.1 MD07G1074200.v1.1 MD07G1074300.v1.1 MD07G1077200.v1.1 MD09G1258700.v1.1
prunus_persica	Prupe.2G094100_v2.0.a1 Prupe.2G096300_v2.0.a1 Prupe.2G096400_v2.0.a1 Prupe.5G061200_v2.0.a1 Prupe.5G067900_v2.0.a1
pyrus_communis	pycom02g20840 pycom07g05830 pycom07g06070 pycom07g06080
rosa_chinensis	RchiOBHm_Chr1g0336601 RchiOBHm_Chr2g0163491 RchiOBHm_Chr5g0058471 RchiOBHm_Chr7g0236931
rosa_laevigata	RLG00000001047 RLG00000021406 RLG00000029344 RLG00000035224 RLG00000035225 RLG00000035226 RLG00000036678
rosa_multiflora	Rmu_co8414615.1_g000001 Rmu_sc0000367.1_g000124 Rmu_sc0000367.1_g000131 Rmu_sc0001969.1_g000007 Rmu_sc0004006.1_g000003 Rmu_sc0005576.1_g000003 Rmu_sc0008383.1_g000007 Rmu_sc0013124.1_g000008 Rmu_sc0024363.1_g000004 Rmu_ssc0000335.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004750 Rroxscaffold_1G00022030 Rroxscaffold_1G00022050 Rroxscaffold_1G00022060 Rroxscaffold_2G00087240 Rroxscaffold_2G00087270 Rroxscaffold_3G00224680
rosa_rugosa	Rorug04G0097000 Rorug05G0315100 Rorug05G0315200 Rorug05G0315400 Rorug05G0453100 Rorug07G0301000
rosa_samantha	Rh1DG154700 Rh2AG570200 Rh2BG582400 Rh2CG552200 Rh4CG163700 Rh5AG381500 Rh5BG393100 Rh5CG417300 Rh5DG408300 Rh5DG408400 Rh5DG541900 Rh7AG456000 Rh7BG427300 Rh7CG474800 Rh7DG443900
rosa_wichuraiana	Rw1G011960 Rw2G047210 Rw5G035950 Rw7G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	47
Acc36I	ACCTGC	2 cut(s)	47, 258
AccI	GTMKAC	2 cut(s)	137, 479
AccII	CGCG	2 cut(s)	129, 131
AciI	CCGC	2 cut(s)	184, 616
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	2 cut(s)	95, 255
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	1 cut(s)	203
AgsI	TTSAA	4 cut(s)	68, 112, 245, 284
AluBI	AGCT	4 cut(s)	82, 241, 327, 467
AluI	AGCT	4 cut(s)	82, 241, 327, 467
Alw21I	GWGCWC	1 cut(s)	491
Alw44I	GTGCAC	1 cut(s)	487
AlwI	GGATC	1 cut(s)	281
ApaLI	GTGCAC	1 cut(s)	487
ApeKI	GCWGC	3 cut(s)	82, 275, 580
ApoI	RAATTY	2 cut(s)	95, 255
AspA2I	CCTAGG	1 cut(s)	55
AspLEI	GCGC	3 cut(s)	129, 131, 133
AsuHPI	GGTGA	2 cut(s)	28, 41
AvrII	CCTAGG	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	491
BarI	GAAGNNNNNNTAC	2 cut(s)	276, 308
BauI	CACGAG	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	1 cut(s)	491
BbvI	GCAGC	3 cut(s)	69, 287, 567
BccI	CCATC	5 cut(s)	97, 386, 505, 555, 610
BcgI	CGANNNNNNTGC	2 cut(s)	517, 551
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	581
BfuAI	ACCTGC	2 cut(s)	47, 258
BisI	GCNGC	3 cut(s)	83, 276, 581
BlnI	CCTAGG	1 cut(s)	55
BlsI	GCNGC	3 cut(s)	84, 277, 582
BmiI	GGNNCC	1 cut(s)	304
BmrI	ACTGGG	1 cut(s)	461
BmuI	ACTGGG	1 cut(s)	461
BpiI	GAAGAC	1 cut(s)	464
BpuEI	CTTGAG	2 cut(s)	218, 281
Bsa29I	ATCGAT	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	55
Bse118I	RCCGGY	1 cut(s)	424
Bse1I	ACTGG	1 cut(s)	456
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	2 cut(s)	157, 602
BseNI	ACTGG	1 cut(s)	456
BsePI	GCGCGC	2 cut(s)	127, 129
BseRI	GAGGAG	1 cut(s)	518
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	3 cut(s)	69, 287, 567
BsgI	GTGCAG	1 cut(s)	294
Bsh1236I	CGCG	2 cut(s)	129, 131
BshVI	ATCGAT	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	491
BsiSI	CCGG	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	1 cut(s)	286
BspACI	CCGC	2 cut(s)	184, 616
BspDI	ATCGAT	1 cut(s)	369
BspFNI	CGCG	2 cut(s)	129, 131
BspLI	GGNNCC	1 cut(s)	304
BspMAI	CTGCAG	1 cut(s)	585
BspMI	ACCTGC	2 cut(s)	47, 258
BspPI	GGATC	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	456
BssAI	RCCGGY	1 cut(s)	424
BssECI	CCNNGG	1 cut(s)	55
BssHII	GCGCGC	2 cut(s)	127, 129
BssMI	GATC	1 cut(s)	286
BssSI	CACGAG	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	55
Bst2BI	CACGAG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	142, 493
Bst6I	CTCTTC	1 cut(s)	165
BstC8I	GCNNGC	6 cut(s)	129, 131, 340, 414, 426, 620
BstF5I	GGATG	2 cut(s)	157, 602
BstFNI	CGCG	2 cut(s)	129, 131
BstHHI	GCGC	3 cut(s)	129, 131, 133
BstKTI	GATC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNSI	RCATGY	2 cut(s)	220, 622
BstSFI	CTRYAG	1 cut(s)	581
BstSLI	GKGCMC	1 cut(s)	491
BstUI	CGCG	2 cut(s)	129, 131
BstV1I	GCAGC	3 cut(s)	69, 287, 567
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
Bsu15I	ATCGAT	1 cut(s)	369
BsuTUI	ATCGAT	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	157, 602
BtsIMutI	CAGTG	1 cut(s)	624
BveI	ACCTGC	2 cut(s)	47, 258
Cac8I	GCNNGC	6 cut(s)	129, 131, 340, 414, 426, 620
CfoI	GCGC	3 cut(s)	129, 131, 133
Cfr10I	RCCGGY	1 cut(s)	424
ClaI	ATCGAT	1 cut(s)	369
CseI	GACGC	2 cut(s)	344, 426
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	3 cut(s)	217, 557, 619
CviQI	GTAC	1 cut(s)	202
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	3 cut(s)	220, 560, 622
FatI	CATG	3 cut(s)	216, 556, 618
FauNDI	CATATG	1 cut(s)	354
FblI	GTMKAC	2 cut(s)	137, 479
Fnu4HI	GCNGC	3 cut(s)	83, 276, 581
FokI	GGATG	2 cut(s)	164, 589
Fsp4HI	GCNGC	3 cut(s)	83, 276, 581
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	3 cut(s)	128, 130, 132
GluI	GCNGC	3 cut(s)	83, 276, 581
HapII	CCGG	1 cut(s)	425
HgaI	GACGC	2 cut(s)	344, 426
HhaI	GCGC	3 cut(s)	129, 131, 133
Hin1II	CATG	3 cut(s)	220, 560, 622
Hin6I	GCGC	3 cut(s)	127, 129, 131
HinP1I	GCGC	3 cut(s)	127, 129, 131
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HinfI	GANTC	3 cut(s)	178, 309, 529
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	2 cut(s)	28, 41
Hpy166II	GTNNAC	3 cut(s)	138, 480, 489
Hpy188I	TCNGA	1 cut(s)	523
Hpy188III	TCNNGA	3 cut(s)	100, 118, 245
Hpy8I	GTNNAC	3 cut(s)	138, 480, 489
Hpy99I	CGWCG	1 cut(s)	481
HpyCH4III	ACNGT	2 cut(s)	142, 493
HpyCH4V	TGCA	7 cut(s)	42, 253, 275, 352, 489, 567, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
Hsp92II	CATG	3 cut(s)	220, 560, 622
HspAI	GCGC	3 cut(s)	127, 129, 131
KroI	GCCGGC	1 cut(s)	424
KroNI	GCCGGC	1 cut(s)	426
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	8 cut(s)	52, 84, 263, 319, 426, 437, 438, 619
Lsp1109I	GCAGC	3 cut(s)	69, 287, 567
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	6 cut(s)	167, 170, 182, 187, 296, 469
MfeI	CAATTG	1 cut(s)	562
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	1 cut(s)	491
MluCI	AATT	5 cut(s)	13, 95, 162, 255, 562
MlyI	GAGTC	2 cut(s)	318, 523
MnlI	CCTC	4 cut(s)	117, 142, 352, 496
MroNI	GCCGGC	1 cut(s)	424
MseI	TTAA	1 cut(s)	444
MspI	CCGG	1 cut(s)	425
MunI	CAATTG	1 cut(s)	562
MvnI	CGCG	2 cut(s)	129, 131
MwoI	GCNNNNNNNGC	1 cut(s)	434
NaeI	GCCGGC	1 cut(s)	426
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	1 cut(s)	286
NgoMIV	GCCGGC	1 cut(s)	424
NlaIII	CATG	3 cut(s)	220, 560, 622
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	29
NspI	RCATGY	2 cut(s)	220, 622
PaeI	GCATGC	1 cut(s)	622
PaqCI	CACCTGC	1 cut(s)	47
PauI	GCGCGC	2 cut(s)	127, 129
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PdiI	GCCGGC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	3 cut(s)	84, 277, 582
PleI	GAGTC	2 cut(s)	317, 523
PpsI	GAGTC	2 cut(s)	317, 523
PspN4I	GGNNCC	1 cut(s)	304
PsrI	GAACNNNNNNTAC	2 cut(s)	526, 558
PstI	CTGCAG	1 cut(s)	585
PsuI	RGATCY	1 cut(s)	286
PteI	GCGCGC	2 cut(s)	127, 129
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SalI	GTCGAC	1 cut(s)	478
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	3 cut(s)	83, 276, 581
Sau3AI	GATC	1 cut(s)	286
SchI	GAGTC	2 cut(s)	318, 523
SduI	GDGCHC	1 cut(s)	491
SfcI	CTRYAG	1 cut(s)	581
SmlI	CTYRAG	2 cut(s)	197, 296
SmoI	CTYRAG	2 cut(s)	197, 296
SphI	GCATGC	1 cut(s)	622
Sse9I	AATT	5 cut(s)	13, 95, 162, 255, 562
SsiI	CCGC	2 cut(s)	184, 616
SspMI	CTAG	1 cut(s)	56
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	142, 493
TaqI	TCGA	3 cut(s)	192, 369, 479
TasI	AATT	5 cut(s)	13, 95, 162, 255, 562
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	631
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	3 cut(s)	82, 275, 580
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	168
TspRI	CASTG	1 cut(s)	631
VneI	GTGCAC	1 cut(s)	487
XapI	RAATTY	2 cut(s)	95, 255
XceI	RCATGY	2 cut(s)	220, 622
XcmI	CCANNNNNNNNNTGG	3 cut(s)	100, 216, 448
XmaJI	CCTAGG	1 cut(s)	55
XmiI	GTMKAC	2 cut(s)	137, 479
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.