Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000735

Physical Location & Seq

Genomic Coordinates Reverse (-)

6699614 .. 6700312

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G061200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTTGGGTGATCCCTATTACGCCACACGTATCCTCGAAGTCTCCGAATTACCCGAAATCGCCATGAAATCTCAATTGTGGCTAGACATCAATGCTACTGTCACACAAATTGTGTTGCCCTCGAATTTAGAGGACGATGAGGATTTGGAAGACCATTACAAATTAATGATGTTAGAAGACGATCACATGGGCCAACCCACCGAGAGCTTCGATTACCACGACAAAATCGAGATTGACCTACTAATGGACGACAGATCCACGTCATCGATTTTGGCTACTATATCCAACGAGCTATCCAAGTCTATCCACGTCTCGTCCCAGGACCTTCGGTGCGTCGCTGCTACTATAGTCCATGATGCCTCACGGAGTCTTGTTGGGAGAGCGTGCATCAAGATTGATGCGATCGTTGAGGACGTGGCCACGGATGATGAAGTGCAGCCCTCGTTTGTACCGGCGAGTAAATCCGCAATTGAGAAGCTGGAGAGGGTGAGAGTGGAAACGGCTGGGGTTTGTTGTTCGGTTTGTATAGCGGAGATTGCAGTGGGTTCGGAAGGTCGTGGTCTGCCATGTTCGCATATTTACCACGAGGCTTGCATCGTGGAGTGGTTGGAGAAAAGCCACTTCTGCCCTCTGTGTCGCTTCTCTTTGCCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000153 GO:0000209 GO:0000835 GO:0000836 GO:0002020 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008593 GO:0009056 GO:0009057 GO:0009966 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010646 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0023051 GO:0023052 GO:0030163 GO:0030433 GO:0030968 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034620 GO:0034976 GO:0035264 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040007 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044322 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1902494 GO:1990234 GO:1990381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

219

Amino Acids

24.2

Weight (kDa)

4.51

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000735)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31481 FvH4_6g45550 FvH4_6g45551 FvH4_6g45560
malus_domestica	MD02G1237700.v1.1 MD02G1241100.v1.1 MD07G1074200.v1.1 MD07G1074300.v1.1 MD07G1077200.v1.1 MD09G1258700.v1.1
prunus_persica	Prupe.2G094100_v2.0.a1 Prupe.2G096300_v2.0.a1 Prupe.2G096400_v2.0.a1 Prupe.5G061200_v2.0.a1 Prupe.5G067900_v2.0.a1
pyrus_communis	pycom02g20840 pycom07g05830 pycom07g06070 pycom07g06080
rosa_chinensis	RchiOBHm_Chr1g0336601 RchiOBHm_Chr2g0163491 RchiOBHm_Chr5g0058471 RchiOBHm_Chr7g0236931
rosa_laevigata	RLG00000001047 RLG00000021406 RLG00000029344 RLG00000035224 RLG00000035225 RLG00000035226 RLG00000036678
rosa_multiflora	Rmu_co8414615.1_g000001 Rmu_sc0000367.1_g000124 Rmu_sc0000367.1_g000131 Rmu_sc0001969.1_g000007 Rmu_sc0004006.1_g000003 Rmu_sc0005576.1_g000003 Rmu_sc0008383.1_g000007 Rmu_sc0013124.1_g000008 Rmu_sc0024363.1_g000004 Rmu_ssc0000335.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004750 Rroxscaffold_1G00022030 Rroxscaffold_1G00022050 Rroxscaffold_1G00022060 Rroxscaffold_2G00087240 Rroxscaffold_2G00087270 Rroxscaffold_3G00224680
rosa_rugosa	Rorug04G0097000 Rorug05G0315100 Rorug05G0315200 Rorug05G0315400 Rorug05G0453100 Rorug07G0301000
rosa_samantha	Rh1DG154700 Rh2AG570200 Rh2BG582400 Rh2CG552200 Rh4CG163700 Rh5AG381500 Rh5BG393100 Rh5CG417300 Rh5DG408300 Rh5DG408400 Rh5DG541900 Rh7AG456000 Rh7BG427300 Rh7CG474800 Rh7DG443900
rosa_wichuraiana	Rw1G011960 Rw2G047210 Rw5G035950 Rw7G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	465, 530
AclWI	GGATC	2 cut(s)	5, 249
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	1 cut(s)	450
AfiI	CCNNNNNNNGG	1 cut(s)	244
AflIII	ACRYGT	1 cut(s)	26
AjiI	CACGTC	3 cut(s)	261, 310, 415
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	3 cut(s)	207, 292, 478
AluI	AGCT	3 cut(s)	207, 292, 478
Alw26I	GTCTC	2 cut(s)	46, 316
AlwI	GGATC	2 cut(s)	5, 249
AoxI	GGCC	2 cut(s)	190, 417
ApeKI	GCWGC	2 cut(s)	338, 436
ApoI	RAATTY	1 cut(s)	124
AseI	ATTAAT	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	190, 322
AsuHPI	GGTGA	2 cut(s)	20, 499
AvaII	GGWCC	1 cut(s)	322
BalI	TGGCCA	1 cut(s)	419
BauI	CACGAG	1 cut(s)	584
BbsI	GAAGAC	2 cut(s)	156, 183
BbvI	GCAGC	2 cut(s)	325, 448
BceAI	ACGGC	1 cut(s)	516
BcgI	CGANNNNNNTGC	2 cut(s)	528, 562
BciT130I	CCWGG	1 cut(s)	320
BciVI	GTATCC	1 cut(s)	41
BcoDI	GTCTC	2 cut(s)	46, 316
BfaI	CTAG	2 cut(s)	83, 655
BfmI	CTRYAG	1 cut(s)	345
BfuI	GTATCC	1 cut(s)	41
BisI	GCNGC	2 cut(s)	339, 437
BlsI	GCNGC	2 cut(s)	340, 438
Bme1390I	CCNGG	1 cut(s)	320
Bme18I	GGWCC	1 cut(s)	322
BmgBI	CACGTC	3 cut(s)	261, 310, 415
BmgT120I	GGNCC	2 cut(s)	190, 322
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	4 cut(s)	346, 388, 396, 603
BpiI	GAAGAC	2 cut(s)	156, 183
BpmI	CTGGAG	1 cut(s)	500
Bsa29I	ATCGAT	1 cut(s)	266
BsaAI	YACGTR	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	318, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse118I	RCCGGY	1 cut(s)	451
BseBI	CCWGG	1 cut(s)	320
BseCI	ATCGAT	1 cut(s)	266
BseDI	CCNNGG	2 cut(s)	318, 420
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	325, 448
BseYI	CCCAGC	1 cut(s)	503
BsgI	GTGCAG	1 cut(s)	455
Bsh1285I	CGRYCG	1 cut(s)	405
BshFI	GGCC	2 cut(s)	192, 419
BshVI	ATCGAT	1 cut(s)	266
BsiEI	CGRYCG	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	452
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	2 cut(s)	46, 316
BsmBI	CGTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	2 cut(s)	192, 419
Bsp143I	GATC	4 cut(s)	10, 181, 254, 402
BspACI	CCGC	2 cut(s)	465, 530
BspANI	GGCC	2 cut(s)	192, 419
BspDI	ATCGAT	1 cut(s)	266
BspPI	GGATC	2 cut(s)	5, 249
BsrFI	RCCGGY	1 cut(s)	451
BssAI	RCCGGY	1 cut(s)	451
BssECI	CCNNGG	2 cut(s)	318, 420
BssMI	GATC	4 cut(s)	10, 181, 254, 402
BssSI	CACGAG	1 cut(s)	584
Bst2BI	CACGAG	1 cut(s)	584
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	1 cut(s)	100
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	3 cut(s)	385, 592, 651
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	430
BstKTI	GATC	4 cut(s)	13, 184, 257, 405
BstMAI	GTCTC	2 cut(s)	46, 316
BstMBI	GATC	4 cut(s)	10, 181, 254, 402
BstMCI	CGRYCG	1 cut(s)	405
BstMWI	GCNNNNNNNGC	3 cut(s)	536, 571, 624
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	325, 448
BstV2I	GAAGAC	2 cut(s)	156, 183
BstX2I	RGATCY	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	254
Bsu15I	ATCGAT	1 cut(s)	266
BsuI	GTATCC	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	192, 419
BsuTUI	ATCGAT	1 cut(s)	266
BtgI	CCRYGG	1 cut(s)	420
BtrI	CACGTC	3 cut(s)	261, 310, 415
BtsCI	GGATG	1 cut(s)	430
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	1 cut(s)	546
Cac8I	GCNNGC	3 cut(s)	385, 592, 651
Cfr10I	RCCGGY	1 cut(s)	451
Cfr13I	GGNCC	2 cut(s)	190, 322
ClaI	ATCGAT	1 cut(s)	266
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	449
CspCI	CAANNNNNGTGG	2 cut(s)	572, 607
CviAII	CATG	4 cut(s)	64, 187, 353, 567
CviQI	GTAC	1 cut(s)	449
DpnI	GATC	4 cut(s)	12, 183, 256, 404
DpnII	GATC	4 cut(s)	10, 181, 254, 402
EaeI	YGGCCR	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	4 cut(s)	67, 190, 356, 570
FaiI	YATR	8 cut(s)	65, 188, 281, 347, 354, 527, 568, 576
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	4 cut(s)	63, 186, 352, 566
Fnu4HI	GCNGC	2 cut(s)	339, 437
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	2 cut(s)	339, 437
FspBI	CTAG	2 cut(s)	83, 655
GluI	GCNGC	2 cut(s)	339, 437
GsaI	CCCAGC	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	2 cut(s)	192, 419
HapII	CCGG	1 cut(s)	452
HgaI	GACGC	1 cut(s)	322
Hin1II	CATG	4 cut(s)	67, 190, 356, 570
HinfI	GANTC	1 cut(s)	367
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	2 cut(s)	20, 499
Hpy188I	TCNGA	2 cut(s)	46, 550
Hpy188III	TCNNGA	2 cut(s)	229, 391
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	2 cut(s)	335, 545
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	4 cut(s)	28, 260, 309, 414
HpyCH4V	TGCA	4 cut(s)	387, 436, 539, 594
HpyF10VI	GCNNNNNNNGC	3 cut(s)	536, 571, 624
HpySE526I	ACGT	4 cut(s)	28, 260, 309, 414
Hsp92II	CATG	4 cut(s)	67, 190, 356, 570
Kzo9I	GATC	4 cut(s)	10, 181, 254, 402
LpnPI	CCDG	5 cut(s)	305, 332, 464, 465, 489
Lsp1109I	GCAGC	2 cut(s)	325, 448
LweI	GCATC	4 cut(s)	346, 388, 396, 603
MaeI	CTAG	2 cut(s)	83, 655
MaeII	ACGT	4 cut(s)	28, 260, 309, 414
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	4 cut(s)	12, 183, 256, 404
MboI	GATC	4 cut(s)	10, 181, 254, 402
MboII	GAAGA	2 cut(s)	161, 188
MfeI	CAATTG	2 cut(s)	74, 468
MflI	RGATCY	1 cut(s)	254
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	6 cut(s)	47, 74, 108, 124, 161, 468
MluNI	TGGCCA	1 cut(s)	419
MlyI	GAGTC	1 cut(s)	376
MmeI	TCCRAC	2 cut(s)	309, 588
Mox20I	TGGCCA	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	419
MspI	CCGG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	320
MunI	CAATTG	2 cut(s)	74, 468
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	3 cut(s)	536, 571, 624
NdeII	GATC	4 cut(s)	10, 181, 254, 402
NlaIII	CATG	4 cut(s)	67, 190, 356, 570
NmuCI	GTSAC	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	4 cut(s)	42, 216, 225, 411
PkrI	GCNGC	2 cut(s)	340, 438
Ple19I	CGATCG	1 cut(s)	405
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
Ppu21I	YACGTR	1 cut(s)	29
PpuMI	RGGWCCY	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	164
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	318
PspPI	GGNCC	2 cut(s)	190, 322
PspPPI	RGGWCCY	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	254
PvuI	CGATCG	1 cut(s)	405
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	2 cut(s)	339, 437
Sau3AI	GATC	4 cut(s)	10, 181, 254, 402
Sau96I	GGNCC	2 cut(s)	190, 322
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	320
SfaNI	GCATC	4 cut(s)	346, 388, 396, 603
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	322
Sse9I	AATT	6 cut(s)	47, 74, 108, 124, 161, 468
SsiI	CCGC	2 cut(s)	465, 530
SspMI	CTAG	2 cut(s)	83, 655
StyD4I	CCNGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	4 cut(s)	31, 263, 312, 417
TaqI	TCGA	5 cut(s)	36, 122, 210, 228, 266
TasI	AATT	6 cut(s)	47, 74, 108, 124, 161, 468
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	1 cut(s)	546
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	338, 436
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	80, 444
TspGWI	ACGGA	2 cut(s)	379, 437
TspRI	CASTG	1 cut(s)	546
VpaK11BI	GGWCC	1 cut(s)	322
VspI	ATTAAT	1 cut(s)	164
XapI	RAATTY	1 cut(s)	124
XspI	CTAG	2 cut(s)	83, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.