RLG00000036678

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000735
Physical Location & Seq
Reverse (-)
83303082 .. 83303393
312 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036678

Sequence Viewer

Length: 312 bp
ATGTTGGAGGTGGAAGACATGATGAGTGAGGTTATATTTGAGCCGGCGAGTAAAATGTCGATTGAGAAATTGGAGAGGGTGAGAATTGTGGAAGCATCAACCATGCATGCGATCTGTTCAGCGGAGATTGTGGTTGGTTCCGAAGAAATTCAGATGCTATGTTCGCAGTTTTACCATGGCAATTGCATTGTCAAGTTGTTGGAGCACAACAAGTTTTTCCCACAATGTCAATATGTTGTGCCTGCAGCTTCTAAAGATGAAACCGGAATACCACTGATCAATAGACATGAGAGAGAAGGTGTTGATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

104

Amino Acids

11.7

Weight (kDa)

4.87

Isoelectric Point (pI)

53.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 147
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw21I GWGCWC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 147
Asp700I GAANNNNTTC 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 257
BclI TGATCA 1 cut(s) 276
BfmI CTRYAG 1 cut(s) 243
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 139
BmsI GCATC 2 cut(s) 104, 144
BpiI GAAGAC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 175
BsaWI WCCGGW 1 cut(s) 263
Bse118I RCCGGY 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 2 cut(s) 44, 264
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 2 cut(s) 111, 276
Bsp19I CCATGG 1 cut(s) 175
BspACI CCGC 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 139
BspMAI CTGCAG 1 cut(s) 247
BsrFI RCCGGY 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 2 cut(s) 111, 276
BssT1I CCWWGG 1 cut(s) 175
BstC8I GCNNGC 3 cut(s) 45, 108, 243
BstDSI CCRYGG 1 cut(s) 175
BstKTI GATC 2 cut(s) 114, 279
BstMBI GATC 2 cut(s) 111, 276
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 257
BstV2I GAAGAC 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 272
Cac8I GCNNGC 3 cut(s) 45, 108, 243
Cfr10I RCCGGY 1 cut(s) 43
CviAII CATG 5 cut(s) 19, 103, 107, 176, 287
CviJI RGCY 2 cut(s) 43, 248
CviKI_1 RGCY 2 cut(s) 43, 248
DpnI GATC 2 cut(s) 113, 278
DpnII GATC 2 cut(s) 111, 276
Eco130I CCWWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 175
EcoT22I ATGCAT 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 5 cut(s) 22, 106, 110, 179, 290
FaiI YATR 8 cut(s) 20, 35, 104, 108, 160, 177, 234, 288
FatI CATG 5 cut(s) 18, 102, 106, 175, 286
FbaI TGATCA 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 246
HapII CCGG 2 cut(s) 44, 264
Hin1II CATG 5 cut(s) 22, 106, 110, 179, 290
HpaII CCGG 2 cut(s) 44, 264
HphI GGTGA 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 142, 153
HpyAV CCTTC 1 cut(s) 290
HpyCH4V TGCA 3 cut(s) 106, 186, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
Hsp92II CATG 5 cut(s) 22, 106, 110, 179, 290
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 276
Kzo9I GATC 2 cut(s) 111, 276
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 3 cut(s) 57, 255, 277
Lsp1109I GCAGC 1 cut(s) 257
LweI GCATC 2 cut(s) 104, 144
MalI GATC 2 cut(s) 113, 278
MboI GATC 2 cut(s) 111, 276
MboII GAAGA 2 cut(s) 26, 155
MfeI CAATTG 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 5 cut(s) 68, 84, 147, 181, 307
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 2 cut(s) 22, 69
Mph1103I ATGCAT 1 cut(s) 108
MroNI GCCGGC 1 cut(s) 43
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 1 cut(s) 310
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 2 cut(s) 44, 264
MunI CAATTG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 163
NaeI GCCGGC 1 cut(s) 45
NcoI CCATGG 1 cut(s) 175
NdeII GATC 2 cut(s) 111, 276
NgoMIV GCCGGC 1 cut(s) 43
NlaIII CATG 5 cut(s) 22, 106, 110, 179, 290
NlaIV GGNNCC 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 108
NspI RCATGY 1 cut(s) 110
PaeI GCATGC 1 cut(s) 110
PdiI GCCGGC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 147
PkrI GCNGC 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 139
PstI CTGCAG 1 cut(s) 247
SaqAI TTAA 1 cut(s) 310
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 2 cut(s) 111, 276
SduI GDGCHC 1 cut(s) 207
SetI ASST 4 cut(s) 12, 33, 250, 301
SfaNI GCATC 2 cut(s) 104, 144
SfcI CTRYAG 1 cut(s) 243
SphI GCATGC 1 cut(s) 110
Sse9I AATT 5 cut(s) 68, 84, 147, 181, 307
SsiI CCGC 1 cut(s) 122
StyI CCWWGG 1 cut(s) 175
TaqI TCGA 1 cut(s) 59
TasI AATT 5 cut(s) 68, 84, 147, 181, 307
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TscAI CASTG 1 cut(s) 279
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 273
TspRI CASTG 1 cut(s) 279
XapI RAATTY 1 cut(s) 147
XceI RCATGY 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 147
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.