RLG00000035224

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000735
Physical Location & Seq
Reverse (-)
63180613 .. 63180960
348 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035224

Sequence Viewer

Length: 348 bp
ATGGTGGACAAGATACTGAGCCAAGCCTTTCAGATGGCAGTGGCACATATTCCTGATGCCAGTCACAAGATTTTGCGTACGGCAGTGGCGGTCAGTATTTGTGTTGTTGATAATGATGATGACGACAATACGGAGGACGATGATGAGACTGAGGATGATAATGAGGATGGTATTGGTTATTACGAGCCTAGGGTTGTGCCGGCAAGTAACTTGTCCCTTGAGAAACTGGAGAGGACGAGAGCCGAGTGTCAACAATGTGCTCCAATATTTGTATGGAGGAGATCTTGGTTGGTGCAGAAGCAGCTCGTATACCTTGTTCACATCTATACCATGAAAGTTGCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.12

Weight (kDa)

4.52

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 309
AciI CCGC 1 cut(s) 89
AfaI GTAC 1 cut(s) 79
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 1 cut(s) 140
ApeKI GCWGC 1 cut(s) 301
AspA2I CCTAGG 1 cut(s) 188
AvrII CCTAGG 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 313
BccI CCATC 2 cut(s) 28, 161
BceAI ACGGC 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 1 cut(s) 189
BglII AGATCT 1 cut(s) 281
BisI GCNGC 1 cut(s) 302
BlnI CCTAGG 1 cut(s) 188
BlsI GCNGC 1 cut(s) 303
BmsI GCATC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 188
Bse118I RCCGGY 1 cut(s) 199
Bse1I ACTGG 2 cut(s) 60, 231
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 2 cut(s) 160, 172
BseMII CTCAG 2 cut(s) 8, 141
BseNI ACTGG 2 cut(s) 60, 231
BseRI GAGGAG 1 cut(s) 292
BseXI GCAGC 1 cut(s) 313
BsgI GTGCAG 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 262
BsiSI CCGG 1 cut(s) 200
BsiWI CGTACG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 1 cut(s) 281
BspACI CCGC 1 cut(s) 89
BspCNI CTCAG 2 cut(s) 9, 142
BsrFI RCCGGY 1 cut(s) 199
BsrI ACTGG 2 cut(s) 60, 231
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 1 cut(s) 281
BssNAI GTATAC 1 cut(s) 310
BssT1I CCWWGG 1 cut(s) 188
Bst1107I GTATAC 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 2 cut(s) 17, 150
BstF5I GGATG 2 cut(s) 160, 172
BstKTI GATC 1 cut(s) 284
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 1 cut(s) 281
BstMWI GCNNNNNNNGC 1 cut(s) 301
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BstZ17I GTATAC 1 cut(s) 310
BtsCI GGATG 2 cut(s) 160, 172
BtsI GCAGTG 2 cut(s) 45, 90
BtsIMutI CAGTG 2 cut(s) 45, 90
Cac8I GCNNGC 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 199
Csp6I GTAC 1 cut(s) 78
CviAII CATG 1 cut(s) 331
CviJI RGCY 5 cut(s) 21, 26, 187, 242, 304
CviKI_1 RGCY 5 cut(s) 21, 26, 187, 242, 304
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 2 cut(s) 17, 150
DpnI GATC 1 cut(s) 283
DpnII GATC 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 1 cut(s) 334
FaiI YATR 5 cut(s) 48, 274, 310, 327, 332
FaqI GGGAC 1 cut(s) 199
FatI CATG 1 cut(s) 330
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 302
FokI GGATG 2 cut(s) 167, 179
Fsp4HI GCNGC 1 cut(s) 302
FspBI CTAG 1 cut(s) 189
GluI GCNGC 1 cut(s) 302
GsuI CTGGAG 1 cut(s) 248
HapII CCGG 1 cut(s) 200
Hin1II CATG 1 cut(s) 334
HincII GTYRAC 1 cut(s) 251
HindII GTYRAC 1 cut(s) 251
HpaII CCGG 1 cut(s) 200
Hpy166II GTNNAC 4 cut(s) 7, 251, 310, 319
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 4 cut(s) 7, 251, 310, 319
HpyCH4V TGCA 2 cut(s) 295, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 301
HpyF3I CTNAG 2 cut(s) 17, 150
Hsp92II CATG 1 cut(s) 334
KroI GCCGGC 1 cut(s) 199
KroNI GCCGGC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 281
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 4 cut(s) 66, 73, 212, 213
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 189
MaeIII GTNAC 2 cut(s) 62, 206
MalI GATC 1 cut(s) 283
MboI GATC 1 cut(s) 281
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 1 cut(s) 262
MnlI CCTC 5 cut(s) 127, 145, 157, 225, 270
MroNI GCCGGC 1 cut(s) 199
MspI CCGG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 301
NaeI GCCGGC 1 cut(s) 201
NdeII GATC 1 cut(s) 281
NgoMIV GCCGGC 1 cut(s) 199
NlaIII CATG 1 cut(s) 334
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 62
PdiI GCCGGC 1 cut(s) 201
Pfl23II CGTACG 1 cut(s) 77
PkrI GCNGC 1 cut(s) 303
PspLI CGTACG 1 cut(s) 77
PsrI GAACNNNNNNTAC 2 cut(s) 300, 332
PsuI RGATCY 1 cut(s) 281
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
SatI GCNGC 1 cut(s) 302
Sau3AI GATC 1 cut(s) 281
SduI GDGCHC 1 cut(s) 262
SetI ASST 2 cut(s) 306, 315
SfaNI GCATC 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SsiI CCGC 1 cut(s) 89
SspI AATATT 1 cut(s) 267
SspMI CTAG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 188
TscAI CASTG 2 cut(s) 45, 90
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 347
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 2 cut(s) 45, 90
XcmI CCANNNNNNNNNTGG 1 cut(s) 270
XmaJI CCTAGG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 309
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.