Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000335.1

Orthogroup ID

OG0000735

Physical Location & Seq

Genomic Coordinates Forward (+)

3362 .. 4060

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000335.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atggccatggccatggccagtgactactgggaagtggtgggcgacactttctgcgacatacttgtcgccttcatggaaccagaaaacgagtttctatgcagcagcaccaagttcttgatggaatttgaggcggtgatcagacgtgtcacctccgacgaggcggaccggctcctagactacgacgtcatcccccgcacgatctggaagaccacctcaatcgaacttgacgactctaactcatcatccatggatagagctctatctgaaacacttcggcagctgcaagtcccactggaggagcgtagctccatggtggagaaagtattgttcaaagccttcgaggcggcacagaaacctagtccttacaccggtgggaagagactgcgtatgcgggtgaacatcgatatgtatgtgattgatgacgatgttgatgaggacgcaaatgatggtggtggtggcattattggtgattattatgagcctaggtttatgccggccagtaaattgtcgattgagaaactggagaggacgagtgtccaagtgccatcaacagtgtgttcggtttgtatggaggagattagggttggtttcgaagcaactaaaatgccttgttcacatctttaccatgagtgctgcattgtagagtggctgcagaaaagtggggtttgccctttgtgtaagttccgcatgcccaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

232

Amino Acids

26.4

Weight (kDa)

4.6

Isoelectric Point (pI)

54.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000735)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g31481 FvH4_6g45550 FvH4_6g45551 FvH4_6g45560
malus_domestica	MD02G1237700.v1.1 MD02G1241100.v1.1 MD07G1074200.v1.1 MD07G1074300.v1.1 MD07G1077200.v1.1 MD09G1258700.v1.1
prunus_persica	Prupe.2G094100_v2.0.a1 Prupe.2G096300_v2.0.a1 Prupe.2G096400_v2.0.a1 Prupe.5G061200_v2.0.a1 Prupe.5G067900_v2.0.a1
pyrus_communis	pycom02g20840 pycom07g05830 pycom07g06070 pycom07g06080
rosa_chinensis	RchiOBHm_Chr1g0336601 RchiOBHm_Chr2g0163491 RchiOBHm_Chr5g0058471 RchiOBHm_Chr7g0236931
rosa_laevigata	RLG00000001047 RLG00000021406 RLG00000029344 RLG00000035224 RLG00000035225 RLG00000035226 RLG00000036678
rosa_multiflora	Rmu_co8414615.1_g000001 Rmu_sc0000367.1_g000124 Rmu_sc0000367.1_g000131 Rmu_sc0001969.1_g000007 Rmu_sc0004006.1_g000003 Rmu_sc0005576.1_g000003 Rmu_sc0008383.1_g000007 Rmu_sc0013124.1_g000008 Rmu_sc0024363.1_g000004 Rmu_ssc0000335.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004750 Rroxscaffold_1G00022030 Rroxscaffold_1G00022050 Rroxscaffold_1G00022060 Rroxscaffold_2G00087240 Rroxscaffold_2G00087270 Rroxscaffold_3G00224680
rosa_rugosa	Rorug04G0097000 Rorug05G0315100 Rorug05G0315200 Rorug05G0315400 Rorug05G0453100 Rorug07G0301000
rosa_samantha	Rh1DG154700 Rh2AG570200 Rh2BG582400 Rh2CG552200 Rh4CG163700 Rh5AG381500 Rh5BG393100 Rh5CG417300 Rh5DG408300 Rh5DG408400 Rh5DG541900 Rh7AG456000 Rh7BG427300 Rh7CG474800 Rh7DG443900
rosa_wichuraiana	Rw1G011960 Rw2G047210 Rw5G035950 Rw7G037850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	62, 182
AatII	GACGTC	1 cut(s)	186
AciI	CCGC	6 cut(s)	131, 161, 193, 344, 391, 685
AcoI	YGGCCR	4 cut(s)	3, 9, 15, 495
AcsI	RAATTY	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	183
AfiI	CCNNNNNNNGG	2 cut(s)	295, 368
AflIII	ACRYGT	1 cut(s)	142
AgeI	ACCGGT	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	331
AjiI	CACGTC	1 cut(s)	143
AluBI	AGCT	3 cut(s)	257, 280, 306
AluI	AGCT	3 cut(s)	257, 280, 306
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	373
AoxI	GGCC	4 cut(s)	3, 9, 15, 495
ApeKI	GCWGC	6 cut(s)	99, 102, 277, 280, 633, 649
ApoI	RAATTY	1 cut(s)	122
AsiGI	ACCGGT	1 cut(s)	368
Asp700I	GAANNNNTTC	1 cut(s)	270
AspA2I	CCTAGG	1 cut(s)	482
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	4 cut(s)	139, 145, 406, 479
AsuII	TTCGAA	1 cut(s)	591
AvaII	GGWCC	1 cut(s)	163
AvrII	CCTAGG	1 cut(s)	482
BalI	TGGCCA	3 cut(s)	5, 11, 17
BanII	GRGCYC	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	6 cut(s)	111, 114, 267, 289, 620, 636
BccI	CCATC	3 cut(s)	112, 440, 553
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	3 cut(s)	173, 357, 483
BfmI	CTRYAG	1 cut(s)	650
BglI	GCCNNNNNGGC	1 cut(s)	341
BisI	GCNGC	7 cut(s)	100, 103, 278, 281, 345, 634, 650
BlnI	CCTAGG	1 cut(s)	482
BlsI	GCNGC	7 cut(s)	101, 104, 279, 282, 346, 635, 651
Bme18I	GGWCC	1 cut(s)	163
BmgBI	CACGTC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	78, 170
BmrI	ACTGGG	1 cut(s)	37
BmuI	ACTGGG	1 cut(s)	37
BoxI	GACNNNNGTC	1 cut(s)	533
BpiI	GAAGAC	1 cut(s)	212
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpmI	CTGGAG	2 cut(s)	314, 542
Bpu14I	TTCGAA	1 cut(s)	591
Bsa29I	ATCGAT	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	5 cut(s)	6, 12, 246, 309, 482
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 368
Bse118I	RCCGGY	3 cut(s)	165, 368, 493
Bse1I	ACTGG	5 cut(s)	18, 32, 297, 498, 525
BseCI	ATCGAT	1 cut(s)	402
BseDI	CCNNGG	5 cut(s)	6, 12, 246, 309, 482
BseGI	GGATG	2 cut(s)	186, 242
BseLI	CCNNNNNNNGG	2 cut(s)	295, 368
BseNI	ACTGG	5 cut(s)	18, 32, 297, 498, 525
BseRI	GAGGAG	2 cut(s)	311, 587
BseXI	GCAGC	6 cut(s)	111, 114, 267, 289, 620, 636
BshFI	GGCC	4 cut(s)	5, 11, 17, 497
BshTI	ACCGGT	1 cut(s)	368
BshVI	ATCGAT	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	259
BsiSI	CCGG	3 cut(s)	166, 369, 494
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	295, 368
BsmAI	GTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	4 cut(s)	5, 11, 17, 497
Bsp119I	TTCGAA	1 cut(s)	591
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	135, 198
Bsp19I	CCATGG	4 cut(s)	6, 12, 246, 309
BspACI	CCGC	6 cut(s)	131, 161, 193, 344, 391, 685
BspANI	GGCC	4 cut(s)	5, 11, 17, 497
BspDI	ATCGAT	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	78, 170
BspMAI	CTGCAG	1 cut(s)	654
BspT104I	TTCGAA	1 cut(s)	591
BsrFI	RCCGGY	3 cut(s)	165, 368, 493
BsrI	ACTGG	5 cut(s)	18, 32, 297, 498, 525
BssAI	RCCGGY	3 cut(s)	165, 368, 493
BssECI	CCNNGG	5 cut(s)	6, 12, 246, 309, 482
BssMI	GATC	2 cut(s)	135, 198
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	5 cut(s)	6, 12, 246, 309, 482
Bst4CI	ACNGT	1 cut(s)	553
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	1 cut(s)	183
BstBI	TTCGAA	1 cut(s)	591
BstC8I	GCNNGC	2 cut(s)	495, 689
BstDSI	CCRYGG	4 cut(s)	6, 12, 246, 309
BstF5I	GGATG	2 cut(s)	186, 242
BstKTI	GATC	2 cut(s)	138, 201
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	2 cut(s)	135, 198
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	691
BstPAI	GACNNNNGTC	1 cut(s)	533
BstSFI	CTRYAG	1 cut(s)	650
BstV1I	GCAGC	6 cut(s)	111, 114, 267, 289, 620, 636
BstV2I	GAAGAC	1 cut(s)	212
BstXI	CCANNNNNNTGG	1 cut(s)	13
Bsu15I	ATCGAT	1 cut(s)	402
BsuRI	GGCC	4 cut(s)	5, 11, 17, 497
BsuTUI	ATCGAT	1 cut(s)	402
BtgI	CCRYGG	4 cut(s)	6, 12, 246, 309
BtrI	CACGTC	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	186, 242
BtsIMutI	CAGTG	3 cut(s)	25, 290, 558
Cac8I	GCNNGC	2 cut(s)	495, 689
Cfr10I	RCCGGY	3 cut(s)	165, 368, 493
Cfr13I	GGNCC	1 cut(s)	163
ClaI	ATCGAT	1 cut(s)	402
CpoI	CGGWCCG	1 cut(s)	163
CseI	GACGC	1 cut(s)	446
CspAI	ACCGGT	1 cut(s)	368
CspI	CGGWCCG	1 cut(s)	163
CviAII	CATG	7 cut(s)	7, 13, 73, 247, 310, 626, 688
DpnI	GATC	2 cut(s)	137, 200
DpnII	GATC	2 cut(s)	135, 198
DrdI	GACNNNNNNGTC	2 cut(s)	62, 182
DseDI	GACNNNNNNGTC	2 cut(s)	62, 182
EaeI	YGGCCR	4 cut(s)	3, 9, 15, 495
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
EciI	GGCGGA	1 cut(s)	176
Ecl136II	GAGCTC	1 cut(s)	257
Eco130I	CCWWGG	5 cut(s)	6, 12, 246, 309, 482
Eco24I	GRGCYC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	257
EcoT14I	CCWWGG	5 cut(s)	6, 12, 246, 309, 482
EcoT38I	GRGCYC	1 cut(s)	259
ErhI	CCWWGG	5 cut(s)	6, 12, 246, 309, 482
FaeI	CATG	7 cut(s)	10, 16, 76, 250, 313, 629, 691
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	7 cut(s)	6, 12, 72, 246, 309, 625, 687
FauI	CCCGC	2 cut(s)	200, 384
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	7 cut(s)	100, 103, 278, 281, 345, 634, 650
FokI	GGATG	2 cut(s)	173, 229
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	7 cut(s)	100, 103, 278, 281, 345, 634, 650
FspBI	CTAG	3 cut(s)	173, 357, 483
GluI	GCNGC	7 cut(s)	100, 103, 278, 281, 345, 634, 650
GsuI	CTGGAG	2 cut(s)	314, 542
HaeIII	GGCC	4 cut(s)	5, 11, 17, 497
HapII	CCGG	3 cut(s)	166, 369, 494
HgaI	GACGC	1 cut(s)	446
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	7 cut(s)	10, 16, 76, 250, 313, 629, 691
HinfI	GANTC	1 cut(s)	230
HpaII	CCGG	3 cut(s)	166, 369, 494
HphI	GGTGA	4 cut(s)	139, 145, 406, 479
Hpy166II	GTNNAC	2 cut(s)	397, 614
Hpy188I	TCNGA	3 cut(s)	140, 154, 265
Hpy188III	TCNNGA	2 cut(s)	115, 202
Hpy8I	GTNNAC	2 cut(s)	397, 614
Hpy99I	CGWCG	2 cut(s)	158, 185
HpyAV	CCTTC	2 cut(s)	79, 346
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4IV	ACGT	2 cut(s)	142, 183
HpyCH4V	TGCA	4 cut(s)	99, 283, 636, 652
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpySE526I	ACGT	2 cut(s)	142, 183
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	7 cut(s)	10, 16, 76, 250, 313, 629, 691
KroI	GCCGGC	1 cut(s)	493
KroNI	GCCGGC	1 cut(s)	495
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	135, 198
LmnI	GCTCC	3 cut(s)	174, 298, 311
Lsp1109I	GCAGC	6 cut(s)	111, 114, 267, 289, 620, 636
MaeI	CTAG	3 cut(s)	173, 357, 483
MaeII	ACGT	2 cut(s)	142, 183
MaeIII	GTNAC	2 cut(s)	20, 145
MalI	GATC	2 cut(s)	137, 200
MboI	GATC	2 cut(s)	135, 198
MboII	GAAGA	2 cut(s)	217, 388
MhlI	GDGCHC	1 cut(s)	259
MlsI	TGGCCA	3 cut(s)	5, 11, 17
MluCI	AATT	3 cut(s)	122, 503, 694
MluNI	TGGCCA	3 cut(s)	5, 11, 17
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	9 cut(s)	121, 151, 160, 223, 289, 334, 427, 519, 565
Mox20I	TGGCCA	3 cut(s)	5, 11, 17
MroNI	GCCGGC	1 cut(s)	493
MroXI	GAANNNNTTC	1 cut(s)	270
MscI	TGGCCA	3 cut(s)	5, 11, 17
MslI	CAYNNNNRTG	2 cut(s)	11, 404
Msp20I	TGGCCA	3 cut(s)	5, 11, 17
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	3 cut(s)	166, 369, 494
MwoI	GCNNNNNNNGC	1 cut(s)	341
NaeI	GCCGGC	1 cut(s)	495
NcoI	CCATGG	4 cut(s)	6, 12, 246, 309
NdeII	GATC	2 cut(s)	135, 198
NgoMIV	GCCGGC	1 cut(s)	493
NlaIII	CATG	7 cut(s)	10, 16, 76, 250, 313, 629, 691
NlaIV	GGNNCC	2 cut(s)	78, 170
NmuCI	GTSAC	2 cut(s)	20, 145
NspI	RCATGY	1 cut(s)	691
NspV	TTCGAA	1 cut(s)	591
PaeI	GCATGC	1 cut(s)	691
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PdiI	GCCGGC	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	270
PinAI	ACCGGT	1 cut(s)	368
PkrI	GCNGC	7 cut(s)	101, 104, 279, 282, 346, 635, 651
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PshAI	GACNNNNGTC	1 cut(s)	533
Psp124BI	GAGCTC	1 cut(s)	259
PspN4I	GGNNCC	2 cut(s)	78, 170
PspPI	GGNCC	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	654
PvuII	CAGCTG	1 cut(s)	280
RseI	CAYNNNNRTG	2 cut(s)	11, 404
Rsr2I	CGGWCCG	1 cut(s)	163
RsrII	CGGWCCG	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	259
SatI	GCNGC	7 cut(s)	100, 103, 278, 281, 345, 634, 650
Sau3AI	GATC	2 cut(s)	135, 198
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	259
SetI	ASST	9 cut(s)	145, 152, 186, 215, 259, 282, 308, 358, 488
SfcI	CTRYAG	1 cut(s)	650
SfuI	TTCGAA	1 cut(s)	591
SgrAI	CRCCGGYG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	2 cut(s)	11, 404
SphI	GCATGC	1 cut(s)	691
Sse9I	AATT	3 cut(s)	122, 503, 694
SsiI	CCGC	6 cut(s)	131, 161, 193, 344, 391, 685
SspMI	CTAG	3 cut(s)	173, 357, 483
SstI	GAGCTC	1 cut(s)	259
StyI	CCWWGG	5 cut(s)	6, 12, 246, 309, 482
TaaI	ACNGT	1 cut(s)	553
TaiI	ACGT	2 cut(s)	145, 186
TaqI	TCGA	5 cut(s)	219, 339, 402, 509, 591
TasI	AATT	3 cut(s)	122, 503, 694
TauI	GCSGC	1 cut(s)	347
TscAI	CASTG	3 cut(s)	25, 297, 558
TseFI	GTSAC	2 cut(s)	20, 145
TseI	GCWGC	6 cut(s)	99, 102, 277, 280, 633, 649
Tsp45I	GTSAC	2 cut(s)	20, 145
TspDTI	ATGAA	1 cut(s)	61
TspRI	CASTG	3 cut(s)	25, 297, 558
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	1 cut(s)	122
XceI	RCATGY	1 cut(s)	691
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XmaJI	CCTAGG	1 cut(s)	482
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	3 cut(s)	173, 357, 483
ZraI	GACGTC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.