Rmu_co8414615.1_g000001

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8414615.1
OG0000735
Physical Location & Seq
Forward (+)
163 .. 579
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8414615.1_g000001.1.cds

Sequence Viewer

Length: 417 bp
atgcgtggtgccatattcgacgagcttcaacacttgcaagtcccaatggatgctcgaagctccatggtggacaagatactgagccaagcttttcagatggcagtggcacatattcctgatgccagtcacaagattttgcgtatggcagtggcaccggtcagtatttgttttgttgataatgatgatgaggacgatacggaggacgatgatgagactgaggatgataatgatgatggtattggttattacgagcctaggtttgagccggcaagtaacttgtcccttgagaaactggagaggacgagagccgaagtgtcaacaatgtgctccatttgtatggaggagatcttggttggtgcagaagcaactcgtatgccttgttcacatctataccatgaaagttgcatagtagagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

138

Amino Acids

15.51

Weight (kDa)

4.25

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 8, 151
AgeI ACCGGT 1 cut(s) 154
AgsI TTSAA 1 cut(s) 29
AluBI AGCT 3 cut(s) 25, 60, 89
AluI AGCT 3 cut(s) 25, 60, 89
Alw21I GWGCWC 1 cut(s) 329
Alw26I GTCTC 1 cut(s) 206
AsiGI ACCGGT 1 cut(s) 154
AspA2I CCTAGG 1 cut(s) 254
AvrII CCTAGG 1 cut(s) 254
BanI GGYRCC 2 cut(s) 8, 151
Bbv12I GWGCWC 1 cut(s) 329
BccI CCATC 2 cut(s) 91, 227
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 255
BglII AGATCT 1 cut(s) 345
BlnI CCTAGG 1 cut(s) 254
BmiI GGNNCC 2 cut(s) 10, 153
BmsI GCATC 2 cut(s) 40, 109
BpmI CTGGAG 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 305
BsaJI CCNNGG 2 cut(s) 63, 254
BsaWI WCCGGW 1 cut(s) 154
Bse118I RCCGGY 2 cut(s) 154, 265
Bse1I ACTGG 2 cut(s) 123, 297
BseDI CCNNGG 2 cut(s) 63, 254
BseGI GGATG 2 cut(s) 55, 226
BseMII CTCAG 2 cut(s) 71, 207
BseNI ACTGG 2 cut(s) 123, 297
BseRI GAGGAG 1 cut(s) 356
BsgI GTGCAG 1 cut(s) 378
BshNI GGYRCC 2 cut(s) 8, 151
BshTI ACCGGT 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 329
BsiSI CCGG 2 cut(s) 155, 266
BslFI GGGAC 2 cut(s) 26, 265
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 2 cut(s) 26, 265
Bsp1286I GDGCHC 1 cut(s) 329
Bsp143I GATC 1 cut(s) 345
Bsp19I CCATGG 1 cut(s) 63
BspCNI CTCAG 2 cut(s) 72, 208
BspLI GGNNCC 2 cut(s) 10, 153
BspT107I GGYRCC 2 cut(s) 8, 151
BsrFI RCCGGY 2 cut(s) 154, 265
BsrI ACTGG 2 cut(s) 123, 297
BssAI RCCGGY 2 cut(s) 154, 265
BssECI CCNNGG 2 cut(s) 63, 254
BssMI GATC 1 cut(s) 345
BssT1I CCWWGG 2 cut(s) 63, 254
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 80, 216
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 55, 226
BstKTI GATC 1 cut(s) 348
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 345
BstXI CCANNNNNNTGG 1 cut(s) 337
BstYI RGATCY 1 cut(s) 345
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 2 cut(s) 55, 226
BtsI GCAGTG 2 cut(s) 108, 153
BtsIMutI CAGTG 2 cut(s) 108, 153
Cac8I GCNNGC 1 cut(s) 267
Cfr10I RCCGGY 2 cut(s) 154, 265
CspAI ACCGGT 1 cut(s) 154
CviAII CATG 2 cut(s) 64, 395
CviJI RGCY 7 cut(s) 25, 60, 84, 89, 253, 265, 308
CviKI_1 RGCY 7 cut(s) 25, 60, 84, 89, 253, 265, 308
DdeI CTNAG 2 cut(s) 80, 216
DpnI GATC 1 cut(s) 347
DpnII GATC 1 cut(s) 345
Eco130I CCWWGG 2 cut(s) 63, 254
EcoT14I CCWWGG 2 cut(s) 63, 254
ErhI CCWWGG 2 cut(s) 63, 254
FaeI CATG 2 cut(s) 67, 398
FaiI YATR 9 cut(s) 14, 65, 111, 143, 338, 374, 391, 396, 407
FaqI GGGAC 2 cut(s) 26, 265
FatI CATG 2 cut(s) 63, 394
FokI GGATG 2 cut(s) 62, 233
FspBI CTAG 1 cut(s) 255
GsuI CTGGAG 1 cut(s) 314
HapII CCGG 2 cut(s) 155, 266
Hin1II CATG 2 cut(s) 67, 398
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HindIII AAGCTT 1 cut(s) 87
HpaII CCGG 2 cut(s) 155, 266
Hpy166II GTNNAC 3 cut(s) 70, 318, 383
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 3 cut(s) 70, 318, 383
Hpy99I CGWCG 1 cut(s) 23
HpyCH4V TGCA 3 cut(s) 37, 359, 405
HpyF3I CTNAG 2 cut(s) 80, 216
Hsp92II CATG 2 cut(s) 67, 398
KroI GCCGGC 1 cut(s) 265
KroNI GCCGGC 1 cut(s) 267
Kzo9I GATC 1 cut(s) 345
LmnI GCTCC 2 cut(s) 65, 332
LpnPI CCDG 5 cut(s) 129, 136, 168, 278, 279
LweI GCATC 2 cut(s) 40, 109
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 125, 272
MalI GATC 1 cut(s) 347
MboI GATC 1 cut(s) 345
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 329
MnlI CCTC 5 cut(s) 181, 193, 211, 291, 334
MroNI GCCGGC 1 cut(s) 265
MslI CAYNNNNRTG 1 cut(s) 335
MspI CCGG 2 cut(s) 155, 266
NaeI GCCGGC 1 cut(s) 267
NcoI CCATGG 1 cut(s) 63
NdeII GATC 1 cut(s) 345
NgoMIV GCCGGC 1 cut(s) 265
NlaIII CATG 2 cut(s) 67, 398
NlaIV GGNNCC 2 cut(s) 10, 153
NmuCI GTSAC 1 cut(s) 125
PdiI GCCGGC 1 cut(s) 267
PinAI ACCGGT 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 10, 153
PsrI GAACNNNNNNTAC 2 cut(s) 364, 396
PsuI RGATCY 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 335
Sau3AI GATC 1 cut(s) 345
SduI GDGCHC 1 cut(s) 329
SetI ASST 4 cut(s) 27, 62, 91, 260
SfaNI GCATC 2 cut(s) 40, 109
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SspMI CTAG 1 cut(s) 255
StyI CCWWGG 2 cut(s) 63, 254
TaqI TCGA 2 cut(s) 18, 55
TscAI CASTG 2 cut(s) 108, 153
TseFI GTSAC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 411
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 108, 153
XmaJI CCTAGG 1 cut(s) 254
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.