FvH4_6g46970

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000438
Physical Location & Seq
Forward (+)
35718586 .. 35720435
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46970.t1

Sequence Viewer

Length: 1071 bp
ATGGCCAATCCTCATGTTTTGGTGGTACCTTATCCAGCACAAGGCCATGTAATTCCTTTACTTGAGCTTTCAAGATGCCTAGCCGAACATGGTGTCAAGGTTACATTTGTGAATACGGAGTGCATGCAGATGAAAGAAGCAATGTCAATGGAGGAAGATACATGGAGTAAAGTTCATCAGGTTTTTATCACTGCTGGTTTCGACTCATTGGAAGATAGGAAAGAATTATCAGGGAAGTTGACTGAAGAAATCTTGAGGGTCTTGCCCCAAAAATTAGAGGAGCTTATTGAAGATATCAATGGATCAAATGGCGATAGTATTACATGTGTTCTTGTTGATCAGACTCTTGGATGGGCTCTGGAAATCGCGGAGAAGAAGGTGATTAAGCGAGCTGCCTATTCCCCAGCTGCAGCTGCACTCACAGTACTTGGGTTAAGCATCCCCAAGCTGATTGATGATGGAGTTATCAACGATGATGGAACTCCCACTAAGAAAGAAGTGATTAAGCTATCACCAGATATGCCTGCTATGAACACACATGAATTTGCGTGGGCATGCCTCGGAAACAAGGCTATGCAGAAAAGTGTGTTTGAACTTATGCTCAGAAACAACAAATCAAGGAAATCGGCAGAGTGGTTACTTTGCAACTCATCTTATGACCTTGAGCCTGCAGCATTTACTATGACTCCACACATCCTACCAATAGGTCCACTTTTGGCAAGCAATCGGCTCAAAGTAAACTTTGCAGGAGAAGACTCTTGCTTGACTTGGCTTGATCAACAAGCAACACAGTCAGTAGTGTATGTTGCTTTTGGTAGCCTAGCAGTTTTCAATCCAATACAGTTCAAAGAATTGGCCCTGGGGATTGAACTCTCCAATAGACCATTATTGTGGGTGGTGAGATCTGATATGATACACACTGAAAATGAAGACTACCTGAAAGAATTCAATGGCAGGGTAGCTACTCGAGCATCGCTCCATTGCTTGTTTTGTGAGCCACTGTGGTTGGAATTCAACCATGGAAGGTTTAGGATATGGAGTCCCTTTCTTGTGCTGGCCTTACTTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

357

Amino Acids

39.84

Weight (kDa)

5.37

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 6 - 41 1e-06 Glycosyltransferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 25
AccB1I GGYRCC 1 cut(s) 25
AccII CGCG 1 cut(s) 368
AciI CCGC 1 cut(s) 368
AclWI GGATC 1 cut(s) 310
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 542, 944, 1010
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 2 cut(s) 27, 426
AfiI CCNNNNNNNGG 1 cut(s) 41
AflIII ACRYGT 1 cut(s) 323
AgsI TTSAA 8 cut(s) 72, 290, 593, 832, 847, 869, 949, 1015
AjnI CCWGG 1 cut(s) 858
AluBI AGCT 8 cut(s) 67, 283, 392, 407, 413, 448, 508, 962
AluI AGCT 8 cut(s) 67, 283, 392, 407, 413, 448, 508, 962
AlwI GGATC 1 cut(s) 310
Ama87I CYCGRG 1 cut(s) 966
AoxI GGCC 4 cut(s) 3, 43, 855, 1056
ApeKI GCWGC 5 cut(s) 392, 407, 410, 413, 671
ApoI RAATTY 3 cut(s) 542, 944, 1010
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
Asp700I GAANNNNTTC 1 cut(s) 944
Asp718I GGTACC 1 cut(s) 25
AspS9I GGNCC 2 cut(s) 707, 856
AsuHPI GGTGA 3 cut(s) 391, 504, 910
AvaI CYCGRG 1 cut(s) 966
AvaII GGWCC 1 cut(s) 707
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 358
BbsI GAAGAC 2 cut(s) 759, 936
BbvI GCAGC 5 cut(s) 379, 394, 400, 422, 683
BccI CCATC 3 cut(s) 345, 452, 470
BciT130I CCWGG 1 cut(s) 860
BclI TGATCA 2 cut(s) 337, 775
BfaI CTAG 2 cut(s) 80, 821
BfmI CTRYAG 2 cut(s) 408, 669
BglII AGATCT 1 cut(s) 902
BisI GCNGC 5 cut(s) 393, 408, 411, 414, 672
BlsI GCNGC 5 cut(s) 394, 409, 412, 415, 673
BmcAI AGTACT 1 cut(s) 426
Bme1390I CCNGG 1 cut(s) 860
Bme18I GGWCC 1 cut(s) 707
BmeT110I CYCGRG 1 cut(s) 966
BmgT120I GGNCC 2 cut(s) 707, 856
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 860
BmsI GCATC 3 cut(s) 65, 447, 980
BpiI GAAGAC 2 cut(s) 759, 936
BplI GAGNNNNNCTC 2 cut(s) 960, 992
BpuEI CTTGAG 3 cut(s) 83, 274, 683
BsaJI CCNNGG 4 cut(s) 559, 858, 859, 1018
BsaXI ACNNNNNCTCC 2 cut(s) 670, 700
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse3DI GCAATG 2 cut(s) 147, 979
BseBI CCWGG 1 cut(s) 860
BseDI CCNNGG 4 cut(s) 559, 858, 859, 1018
BseGI GGATG 3 cut(s) 356, 438, 693
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 2 cut(s) 147, 979
BseMII CTCAG 1 cut(s) 616
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 5 cut(s) 379, 394, 400, 422, 683
BseYI CCCAGC 1 cut(s) 403
BsgI GTGCAG 1 cut(s) 399
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 4 cut(s) 5, 45, 857, 1058
BshNI GGYRCC 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 966
BslFI GGGAC 1 cut(s) 1026
BslI CCNNNNNNNGG 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 1026
BsnI GGCC 4 cut(s) 5, 45, 857, 1058
BsoBI CYCGRG 1 cut(s) 966
Bsp1286I GDGCHC 1 cut(s) 358
Bsp143I GATC 4 cut(s) 302, 337, 775, 902
Bsp19I CCATGG 1 cut(s) 1018
BspACI CCGC 1 cut(s) 368
BspANI GGCC 4 cut(s) 5, 45, 857, 1058
BspCNI CTCAG 1 cut(s) 615
BspFNI CGCG 1 cut(s) 368
BspLI GGNNCC 1 cut(s) 27
BspMAI CTGCAG 2 cut(s) 412, 673
BspPI GGATC 1 cut(s) 310
BspT107I GGYRCC 1 cut(s) 25
BsrDI GCAATG 2 cut(s) 147, 979
BssECI CCNNGG 4 cut(s) 559, 858, 859, 1018
BssMI GATC 4 cut(s) 302, 337, 775, 902
BssT1I CCWWGG 1 cut(s) 1018
Bst2UI CCWGG 1 cut(s) 860
Bst4CI ACNGT 4 cut(s) 424, 792, 843, 1002
BstC8I GCNNGC 7 cut(s) 125, 390, 525, 556, 669, 721, 1056
BstDEI CTNAG 2 cut(s) 489, 602
BstDSI CCRYGG 1 cut(s) 1018
BstF5I GGATG 3 cut(s) 356, 438, 693
BstFNI CGCG 1 cut(s) 368
BstKTI GATC 4 cut(s) 305, 340, 778, 905
BstMBI GATC 4 cut(s) 302, 337, 775, 902
BstMWI GCNNNNNNNGC 2 cut(s) 413, 968
BstNI CCWGG 1 cut(s) 860
BstNSI RCATGY 3 cut(s) 127, 327, 558
BstSCI CCNGG 1 cut(s) 858
BstSFI CTRYAG 2 cut(s) 408, 669
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 5 cut(s) 379, 394, 400, 422, 683
BstV2I GAAGAC 2 cut(s) 759, 936
BstX2I RGATCY 1 cut(s) 902
BstXI CCANNNNNNTGG 1 cut(s) 891
BstYI RGATCY 1 cut(s) 902
BsuRI GGCC 4 cut(s) 5, 45, 857, 1058
BtgI CCRYGG 1 cut(s) 1018
BtgZI GCGATG 1 cut(s) 957
BtsCI GGATG 3 cut(s) 356, 438, 693
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 3 cut(s) 189, 918, 998
Cac8I GCNNGC 7 cut(s) 125, 390, 525, 556, 669, 721, 1056
Cfr13I GGNCC 2 cut(s) 707, 856
Csp6I GTAC 2 cut(s) 26, 425
CspCI CAANNNNNGTGG 2 cut(s) 987, 1022
CviAII CATG 9 cut(s) 14, 47, 89, 124, 162, 324, 539, 555, 1019
CviQI GTAC 2 cut(s) 26, 425
DdeI CTNAG 2 cut(s) 489, 602
DpnI GATC 4 cut(s) 304, 339, 777, 904
DpnII GATC 4 cut(s) 302, 337, 775, 902
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 1018
Eco24I GRGCYC 1 cut(s) 358
Eco32I GATATC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 707
Eco57I CTGAAG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 966
EcoRI GAATTC 2 cut(s) 944, 1010
EcoRII CCWGG 1 cut(s) 858
EcoRV GATATC 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 1018
EcoT38I GRGCYC 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 1018
FaeI CATG 9 cut(s) 17, 50, 92, 127, 165, 327, 542, 558, 1022
FaqI GGGAC 1 cut(s) 1026
FatI CATG 9 cut(s) 13, 46, 88, 123, 161, 323, 538, 554, 1018
FbaI TGATCA 2 cut(s) 337, 775
Fnu4HI GCNGC 5 cut(s) 393, 408, 411, 414, 672
FokI GGATG 3 cut(s) 363, 425, 680
FriOI GRGCYC 1 cut(s) 358
Fsp4HI GCNGC 5 cut(s) 393, 408, 411, 414, 672
FspBI CTAG 2 cut(s) 80, 821
GluI GCNGC 5 cut(s) 393, 408, 411, 414, 672
GsaI CCCAGC 1 cut(s) 407
HaeIII GGCC 4 cut(s) 5, 45, 857, 1058
Hin1II CATG 9 cut(s) 17, 50, 92, 127, 165, 327, 542, 558, 1022
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HinfI GANTC 5 cut(s) 203, 343, 685, 755, 1039
HphI GGTGA 3 cut(s) 391, 504, 910
Hpy166II GTNNAC 3 cut(s) 240, 710, 739
Hpy188I TCNGA 4 cut(s) 342, 563, 605, 907
Hpy188III TCNNGA 3 cut(s) 72, 253, 359
Hpy8I GTNNAC 3 cut(s) 240, 710, 739
HpyAV CCTTC 2 cut(s) 370, 1017
HpyCH4III ACNGT 4 cut(s) 424, 792, 843, 1002
HpyCH4V TGCA 8 cut(s) 123, 127, 410, 416, 577, 645, 671, 746
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 968
HpyF3I CTNAG 2 cut(s) 489, 602
Hsp92II CATG 9 cut(s) 17, 50, 92, 127, 165, 327, 542, 558, 1022
KpnI GGTACC 1 cut(s) 29
Ksp22I TGATCA 2 cut(s) 337, 775
Kzo9I GATC 4 cut(s) 302, 337, 775, 902
LmnI GCTCC 2 cut(s) 280, 981
Lsp1109I GCAGC 5 cut(s) 379, 394, 400, 422, 683
LweI GCATC 3 cut(s) 65, 447, 980
MaeI CTAG 2 cut(s) 80, 821
MaeIII GTNAC 2 cut(s) 100, 636
MalI GATC 4 cut(s) 304, 339, 777, 904
MboI GATC 4 cut(s) 302, 337, 775, 902
MboII GAAGA 7 cut(s) 167, 224, 257, 302, 385, 764, 941
MflI RGATCY 1 cut(s) 902
MhlI GDGCHC 1 cut(s) 358
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 51, 224, 272, 542, 851, 944, 1010
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 5 cut(s) 197, 337, 679, 749, 1048
MmeI TCCRAC 1 cut(s) 987
MnlI CCTC 5 cut(s) 21, 145, 249, 271, 569
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 944
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 384, 434, 504
MslI CAYNNNNRTG 2 cut(s) 128, 889
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 407, 413
MspR9I CCNGG 1 cut(s) 860
MvaI CCWGG 1 cut(s) 860
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 413, 968
NcoI CCATGG 1 cut(s) 1018
NdeII GATC 4 cut(s) 302, 337, 775, 902
NlaIII CATG 9 cut(s) 17, 50, 92, 127, 165, 327, 542, 558, 1022
NlaIV GGNNCC 1 cut(s) 27
NspI RCATGY 3 cut(s) 127, 327, 558
PaeI GCATGC 2 cut(s) 127, 558
PaeR7I CTCGAG 1 cut(s) 966
PasI CCCWGGG 1 cut(s) 859
PciI ACATGT 1 cut(s) 323
PdmI GAANNNNTTC 1 cut(s) 944
PkrI GCNGC 5 cut(s) 394, 409, 412, 415, 673
PleI GAGTC 5 cut(s) 197, 337, 679, 749, 1047
PpsI GAGTC 5 cut(s) 197, 337, 679, 749, 1047
PscI ACATGT 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 858
PspFI CCCAGC 1 cut(s) 403
PspGI CCWGG 1 cut(s) 858
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 2 cut(s) 707, 856
PspXI VCTCGAGB 1 cut(s) 966
PstI CTGCAG 2 cut(s) 412, 673
PsuI RGATCY 1 cut(s) 902
PvuII CAGCTG 2 cut(s) 407, 413
RsaI GTAC 2 cut(s) 27, 426
RsaNI GTAC 2 cut(s) 26, 425
RseI CAYNNNNRTG 2 cut(s) 128, 889
SaqAI TTAA 3 cut(s) 384, 434, 504
SatI GCNGC 5 cut(s) 393, 408, 411, 414, 672
Sau3AI GATC 4 cut(s) 302, 337, 775, 902
Sau96I GGNCC 2 cut(s) 707, 856
ScaI AGTACT 1 cut(s) 426
SchI GAGTC 5 cut(s) 197, 337, 679, 749, 1048
ScrFI CCNGG 1 cut(s) 860
SduI GDGCHC 1 cut(s) 358
SfaNI GCATC 3 cut(s) 65, 447, 980
SfcI CTRYAG 2 cut(s) 408, 669
Sfr274I CTCGAG 1 cut(s) 966
SinI GGWCC 1 cut(s) 707
SlaI CTCGAG 1 cut(s) 966
SmiMI CAYNNNNRTG 2 cut(s) 128, 889
SmlI CTYRAG 4 cut(s) 62, 253, 662, 966
SmoI CTYRAG 4 cut(s) 62, 253, 662, 966
SphI GCATGC 2 cut(s) 127, 558
Sse9I AATT 7 cut(s) 51, 224, 272, 542, 851, 944, 1010
SsiI CCGC 1 cut(s) 368
SspMI CTAG 2 cut(s) 80, 821
StyD4I CCNGG 1 cut(s) 858
StyI CCWWGG 1 cut(s) 1018
TaaI ACNGT 4 cut(s) 424, 792, 843, 1002
TaqI TCGA 2 cut(s) 201, 967
TasI AATT 7 cut(s) 51, 224, 272, 542, 851, 944, 1010
TatI WGTACW 1 cut(s) 424
Tru1I TTAA 3 cut(s) 384, 434, 504
Tru9I TTAA 3 cut(s) 384, 434, 504
TscAI CASTG 3 cut(s) 196, 925, 1005
TseI GCWGC 5 cut(s) 392, 407, 410, 413, 671
TspDTI ATGAA 5 cut(s) 146, 164, 545, 555, 942
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 3 cut(s) 196, 925, 1005
VpaK11BI GGWCC 1 cut(s) 707
XapI RAATTY 3 cut(s) 542, 944, 1010
XceI RCATGY 3 cut(s) 127, 327, 558
XhoI CTCGAG 1 cut(s) 966
XmnI GAANNNNTTC 1 cut(s) 944
XspI CTAG 2 cut(s) 80, 821
ZrmI AGTACT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.