Rorug02G0519500

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000438
Physical Location & Seq
Forward (+)
65176270 .. 65179784
3515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0519500.1

Sequence Viewer

Length: 1119 bp
ATGACGATGAAGCCGCAGATGATCAGAGCCAATTCGAAGTTCAGGGAGAGACTGGAAGTGCTGAAATGGTGCTCACTGAAGATGATTGTAAGTCAAAGAAAGCTAGGAAAAAAGAAAAAGAAGAATCGCGATTCCTTCGAAAGTGGGAAGTTACTGGAAAAGAGAGTGGAAGCTGTTCGAGATGAACCTTGTCATCTCTCTTCAGTGGATGAGGACTGCTCAAGAGAAATAACAAAATGGATTGTGGAATACCAGCAAAATAGACCTGGATTGAAGGTACTGCAGCAAAGAATTGACGAGTTCATTATTGCACATGAGGCAAAATTGGAACAGGTAATTTCCTCTTCCATGTTATTAGCGAGTGATGAGATATATGGTGGCAGGTTATTAGTGAGTTTGCAGTTGTTTGTTAGAAATGATGCGGATGAGTTTAGTGCGGTTTTGAAGCGTGAATCGAATCCGAAGATATTGATCACCACTTGCCGATTTAACTCTTCTAGGGGTCCTGCTTTTACAGAGGAACTACTTTCGGTGATCCCAAATGCGCAGTACTATAAAAGAGGCACTTATGACTTGAAAAAGAATCATGGAAATCCAACCAGTCATGAGCCTGAGCTTGTATTAAACAACTTTACAACACGCCTTGGTCATCGTATTGGGAGATTAATACAGGTACTTGAGGGAGAACCAAATTTTCGTGGTCGGCGAGTTGTAACTTTCCACAACCAGCGAGATTTTATATTCTTCCGGCATCATCGGTACATTTTTGAAACCAAAGAGACTAAACAGGCTGAAGAAAAGGGCAAAAAGACCAAGGATTCCAAAGCTGACGCTATTACTGAAGCAAAACCATTTGCGCGCCTACAGGAATGTGGTCCTCGTTTTACCCTTAAATTGACCAGTCTGCAGCACGGGACATTTGATCCTAGAGGCGGGGAGTTTGAGTGGGTTCACAAGAGATCAATGGAAACTTTGATTGATTGGATTGATAGTGAAGTCAACATGAGCAATACTTATGTACTTTTTCGAACTTATGCTCCTATGCATTTCAGGATTTTGAATGGTGAAGATGTAGATATAGAGGAAACGGTTCTTCGCACTCCAATATCCAAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

372

Amino Acids

43.38

Weight (kDa)

9.37

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 191 - 300 4e-13 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 546
Acc36I ACCTGC 1 cut(s) 372
AccII CGCG 2 cut(s) 129, 859
AciI CCGC 4 cut(s) 14, 422, 437, 933
AclWI GGATC 2 cut(s) 529, 917
AcsI RAATTY 1 cut(s) 691
AcuI CTGAAG 4 cut(s) 98, 186, 813, 861
AfaI GTAC 5 cut(s) 279, 551, 675, 761, 1020
AfiI CCNNNNNNNGG 1 cut(s) 932
AgsI TTSAA 5 cut(s) 274, 445, 577, 770, 1060
AjnI CCWGG 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AloI GAACNNNNNNTCC 2 cut(s) 1021, 1053
AluBI AGCT 4 cut(s) 103, 173, 616, 827
AluI AGCT 4 cut(s) 103, 173, 616, 827
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 2 cut(s) 43, 773
AlwI GGATC 2 cut(s) 529, 917
ApeKI GCWGC 2 cut(s) 283, 907
ApoI RAATTY 1 cut(s) 691
AseI ATTAAT 1 cut(s) 665
Asp700I GAANNNNTTC 2 cut(s) 174, 1089
AspLEI GCGC 3 cut(s) 547, 859, 861
AspS9I GGNCC 2 cut(s) 503, 875
AsuHPI GGTGA 3 cut(s) 466, 544, 1076
AsuII TTCGAA 3 cut(s) 35, 138, 1027
AvaII GGWCC 2 cut(s) 503, 875
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 2 cut(s) 295, 919
BciT130I CCWGG 1 cut(s) 267
BclI TGATCA 2 cut(s) 21, 471
BcoDI GTCTC 2 cut(s) 43, 773
BfaI CTAG 4 cut(s) 104, 498, 927, 1117
BfmI CTRYAG 3 cut(s) 281, 863, 905
BfuAI ACCTGC 1 cut(s) 372
BisI GCNGC 3 cut(s) 14, 284, 908
BlsI GCNGC 3 cut(s) 15, 285, 909
BmcAI AGTACT 1 cut(s) 551
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 2 cut(s) 503, 875
BmgT120I GGNCC 2 cut(s) 503, 875
BmiI GGNNCC 1 cut(s) 504
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 409, 760
BplI GAGNNNNNCTC 2 cut(s) 203, 235
Bpu10I CCTNAGC 1 cut(s) 612
Bpu14I TTCGAA 3 cut(s) 35, 138, 1027
BpuEI CTTGAG 2 cut(s) 205, 698
BsaBI GATNNNNATC 1 cut(s) 470
BsaJI CCNNGG 2 cut(s) 643, 813
BsaXI ACNNNNNCTCC 4 cut(s) 929, 959, 1021, 1051
Bsc4I CCNNNNNNNGG 1 cut(s) 932
Bse1I ACTGG 4 cut(s) 57, 159, 600, 900
Bse8I GATNNNNATC 1 cut(s) 470
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 643, 813
BseGI GGATG 2 cut(s) 214, 430
BseJI GATNNNNATC 1 cut(s) 470
BseLI CCNNNNNNNGG 1 cut(s) 932
BseMII CTCAG 1 cut(s) 603
BseNI ACTGG 4 cut(s) 57, 159, 600, 900
BsePI GCGCGC 1 cut(s) 857
BseXI GCAGC 2 cut(s) 295, 919
Bsh1236I CGCG 2 cut(s) 129, 859
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 748
BslFI GGGAC 1 cut(s) 928
BslI CCNNNNNNNGG 1 cut(s) 932
BsmAI GTCTC 2 cut(s) 43, 773
BsmFI GGGAC 1 cut(s) 928
Bsp119I TTCGAA 3 cut(s) 35, 138, 1027
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 5 cut(s) 21, 471, 534, 922, 959
Bsp68I TCGCGA 1 cut(s) 129
BspACI CCGC 4 cut(s) 14, 422, 437, 933
BspCNI CTCAG 1 cut(s) 604
BspFNI CGCG 2 cut(s) 129, 859
BspHI TCATGA 1 cut(s) 604
BspLI GGNNCC 1 cut(s) 504
BspMAI CTGCAG 2 cut(s) 285, 909
BspMI ACCTGC 1 cut(s) 372
BspPI GGATC 2 cut(s) 529, 917
BspT104I TTCGAA 3 cut(s) 35, 138, 1027
BsrI ACTGG 4 cut(s) 57, 159, 600, 900
BssECI CCNNGG 2 cut(s) 643, 813
BssHII GCGCGC 1 cut(s) 857
BssMI GATC 5 cut(s) 21, 471, 534, 922, 959
BssT1I CCWWGG 2 cut(s) 643, 813
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 1090
Bst6I CTCTTC 3 cut(s) 205, 349, 499
BstBI TTCGAA 3 cut(s) 35, 138, 1027
BstC8I GCNNGC 1 cut(s) 859
BstDEI CTNAG 1 cut(s) 612
BstF5I GGATG 2 cut(s) 214, 430
BstFNI CGCG 2 cut(s) 129, 859
BstHHI GCGC 3 cut(s) 547, 859, 861
BstKTI GATC 5 cut(s) 24, 474, 537, 925, 962
BstMAI GTCTC 2 cut(s) 43, 773
BstMBI GATC 5 cut(s) 21, 471, 534, 922, 959
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstSFI CTRYAG 3 cut(s) 281, 863, 905
BstUI CGCG 2 cut(s) 129, 859
BstV1I GCAGC 2 cut(s) 295, 919
BtsCI GGATG 2 cut(s) 214, 430
BtsIMutI CAGTG 2 cut(s) 74, 210
BtuMI TCGCGA 1 cut(s) 129
BveI ACCTGC 1 cut(s) 372
Cac8I GCNNGC 1 cut(s) 859
CciI TCATGA 1 cut(s) 604
CfoI GCGC 3 cut(s) 547, 859, 861
Cfr13I GGNCC 2 cut(s) 503, 875
CseI GACGC 1 cut(s) 839
Csp6I GTAC 5 cut(s) 278, 550, 674, 760, 1019
CviAII CATG 5 cut(s) 314, 349, 587, 605, 1003
CviJI RGCY 8 cut(s) 13, 29, 103, 173, 610, 616, 791, 827
CviKI_1 RGCY 8 cut(s) 13, 29, 103, 173, 610, 616, 791, 827
CviQI GTAC 5 cut(s) 278, 550, 674, 760, 1019
DdeI CTNAG 1 cut(s) 612
DpnI GATC 5 cut(s) 23, 473, 536, 924, 961
DpnII GATC 5 cut(s) 21, 471, 534, 922, 959
Eam1104I CTCTTC 3 cut(s) 205, 349, 499
EarI CTCTTC 3 cut(s) 205, 349, 499
Eco130I CCWWGG 2 cut(s) 643, 813
Eco47I GGWCC 2 cut(s) 503, 875
Eco57I CTGAAG 4 cut(s) 98, 186, 813, 861
EcoO109I RGGNCCY 1 cut(s) 503
EcoRII CCWGG 1 cut(s) 265
EcoT14I CCWWGG 2 cut(s) 643, 813
EcoT22I ATGCAT 1 cut(s) 1047
ErhI CCWWGG 2 cut(s) 643, 813
FaeI CATG 5 cut(s) 317, 352, 590, 608, 1006
FalI AAGNNNNNCTT 2 cut(s) 550, 582
FaqI GGGAC 1 cut(s) 928
FatI CATG 5 cut(s) 313, 348, 586, 604, 1002
FauI CCCGC 1 cut(s) 926
FbaI TGATCA 2 cut(s) 21, 471
Fnu4HI GCNGC 3 cut(s) 14, 284, 908
FokI GGATG 2 cut(s) 221, 437
Fsp4HI GCNGC 3 cut(s) 14, 284, 908
FspBI CTAG 4 cut(s) 104, 498, 927, 1117
FspI TGCGCA 1 cut(s) 546
GlaI GCGC 3 cut(s) 546, 858, 860
GluI GCNGC 3 cut(s) 14, 284, 908
HapII CCGG 1 cut(s) 748
HgaI GACGC 1 cut(s) 839
HhaI GCGC 3 cut(s) 547, 859, 861
Hin1II CATG 5 cut(s) 317, 352, 590, 608, 1006
Hin6I GCGC 3 cut(s) 545, 857, 859
HinP1I GCGC 3 cut(s) 545, 857, 859
HincII GTYRAC 1 cut(s) 1000
HindII GTYRAC 1 cut(s) 1000
HinfI GANTC 6 cut(s) 124, 131, 452, 457, 583, 818
HpaII CCGG 1 cut(s) 748
HphI GGTGA 3 cut(s) 466, 544, 1076
Hpy166II GTNNAC 2 cut(s) 952, 1000
Hpy188I TCNGA 2 cut(s) 26, 462
Hpy188III TCNNGA 5 cut(s) 128, 179, 222, 605, 1051
Hpy8I GTNNAC 2 cut(s) 952, 1000
HpyAV CCTTC 2 cut(s) 145, 268
HpyCH4III ACNGT 1 cut(s) 1090
HpyCH4V TGCA 5 cut(s) 283, 311, 400, 907, 1045
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 1 cut(s) 612
Hsp92II CATG 5 cut(s) 317, 352, 590, 608, 1006
HspAI GCGC 3 cut(s) 545, 857, 859
Ksp22I TGATCA 2 cut(s) 21, 471
Kzo9I GATC 5 cut(s) 21, 471, 534, 922, 959
LmnI GCTCC 1 cut(s) 1042
Lsp1109I GCAGC 2 cut(s) 295, 919
LweI GCATC 2 cut(s) 409, 760
MaeI CTAG 4 cut(s) 104, 498, 927, 1117
MaeIII GTNAC 2 cut(s) 150, 712
MalI GATC 5 cut(s) 23, 473, 536, 924, 961
MboI GATC 5 cut(s) 21, 471, 534, 922, 959
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 6 cut(s) 31, 291, 323, 336, 691, 893
MmeI TCCRAC 1 cut(s) 620
MnlI CCTC 9 cut(s) 205, 310, 352, 511, 554, 673, 888, 923, 1075
Mph1103I ATGCAT 1 cut(s) 1047
MroXI GAANNNNTTC 2 cut(s) 174, 1089
MseI TTAA 4 cut(s) 489, 623, 665, 891
MspI CCGG 1 cut(s) 748
MspR9I CCNGG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 267
MvnI CGCG 2 cut(s) 129, 859
MwoI GCNNNNNNNGC 1 cut(s) 317
NdeII GATC 5 cut(s) 21, 471, 534, 922, 959
NlaIII CATG 5 cut(s) 317, 352, 590, 608, 1006
NlaIV GGNNCC 1 cut(s) 504
NruI TCGCGA 1 cut(s) 129
NsbI TGCGCA 1 cut(s) 546
NsiI ATGCAT 1 cut(s) 1047
NspV TTCGAA 3 cut(s) 35, 138, 1027
PagI TCATGA 1 cut(s) 604
PauI GCGCGC 1 cut(s) 857
PcsI WCGNNNNNNNCGW 1 cut(s) 703
PdmI GAANNNNTTC 2 cut(s) 174, 1089
PfeI GAWTC 6 cut(s) 124, 131, 452, 457, 583, 818
PkrI GCNGC 3 cut(s) 15, 285, 909
PpuMI RGGWCCY 1 cut(s) 503
PshBI ATTAAT 1 cut(s) 665
Psp5II RGGWCCY 1 cut(s) 503
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 504
PspPI GGNCC 2 cut(s) 503, 875
PspPPI RGGWCCY 1 cut(s) 503
PstI CTGCAG 2 cut(s) 285, 909
PteI GCGCGC 1 cut(s) 857
RruI TCGCGA 1 cut(s) 129
RsaI GTAC 5 cut(s) 279, 551, 675, 761, 1020
RsaNI GTAC 5 cut(s) 278, 550, 674, 760, 1019
SaqAI TTAA 4 cut(s) 489, 623, 665, 891
SatI GCNGC 3 cut(s) 14, 284, 908
Sau3AI GATC 5 cut(s) 21, 471, 534, 922, 959
Sau96I GGNCC 2 cut(s) 503, 875
ScaI AGTACT 1 cut(s) 551
ScrFI CCNGG 1 cut(s) 267
SduI GDGCHC 1 cut(s) 74
SfaNI GCATC 2 cut(s) 409, 760
SfcI CTRYAG 3 cut(s) 281, 863, 905
SfuI TTCGAA 3 cut(s) 35, 138, 1027
SinI GGWCC 2 cut(s) 503, 875
SmlI CTYRAG 2 cut(s) 220, 677
SmoI CTYRAG 2 cut(s) 220, 677
Sse9I AATT 6 cut(s) 31, 291, 323, 336, 691, 893
SsiI CCGC 4 cut(s) 14, 422, 437, 933
SspMI CTAG 4 cut(s) 104, 498, 927, 1117
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 2 cut(s) 643, 813
TaaI ACNGT 1 cut(s) 1090
TaqI TCGA 5 cut(s) 35, 138, 178, 455, 1027
TasI AATT 6 cut(s) 31, 291, 323, 336, 691, 893
TatI WGTACW 2 cut(s) 549, 1018
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 6 cut(s) 124, 131, 452, 457, 583, 818
Tru1I TTAA 4 cut(s) 489, 623, 665, 891
Tru9I TTAA 4 cut(s) 489, 623, 665, 891
TscAI CASTG 2 cut(s) 81, 210
TseI GCWGC 2 cut(s) 283, 907
TspDTI ATGAA 3 cut(s) 23, 198, 292
TspRI CASTG 2 cut(s) 81, 210
VpaK11BI GGWCC 2 cut(s) 503, 875
VspI ATTAAT 1 cut(s) 665
XapI RAATTY 1 cut(s) 691
XmnI GAANNNNTTC 2 cut(s) 174, 1089
XspI CTAG 4 cut(s) 104, 498, 927, 1117
ZrmI AGTACT 1 cut(s) 551
Zsp2I ATGCAT 1 cut(s) 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.