RLG00000021576

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000438
Physical Location & Seq
Forward (+)
76519669 .. 76522655
2987 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021576

Sequence Viewer

Length: 1182 bp
ATGAGCAAGCCACATATTATAGTTATTCCTTACCCAGCACAAGGTCATGTAATTCCCTTGATGGAGTTATCACAGTGCTTAATAAATCATGGATTCAAAGTCACATTCGTGAATACGGATCATACTCATGAGCGAGTCATGAATTCCGTGACTGATGAAACTCATAGAGGGGATGATCAGCTTCATCTGGTTTCAATTCCAGATGGGTTAGAACCATGGGAGGACAGGAATGAGCTAGGTCAGTTATGTGAAGCAATATACCGAGTGATGCCTAGGAAGTTGGAGGACCTCATAGAGAAGATCAATGGAGGGGAAGATGACAAAATAACTTGTGTCATTGCTGATTTCAGTATCGGGTGGGCTCTCCTTTTTTCCTGCGGCAGCTGCAGTTTGGCTTTGAATTTTTCTATTCCACAGTTAATACATGAAGGAATCATTAATAGTGATGGAACTGTATCAAAAGGCCAAGTGATTCACTTGGCACCAAACATGCCCATCATGAAGACCGAAGACATGCCGTGGTTATGCTTTGATGGCTTACTGCAGGAACTGGCAGGCTGGGTTATTTGCAACTCAGCATTTGACCTCGAACCAGCAGCCTTTGCCTTGGCACCCGAGATTTTACCAATAGGCCCTCTTTTGGCAAGCATCATCTATGTTGCATTTGGAAGCTTCACAGTTTTTGAGCAAACCCAGTTCCAAGAATTGGCTTTAGGTCTTGAACTGTCCAATAAGCCATTCCTGTGGGTTGTGAGGCCAGACATCTCTGAAAGTACTCCCTATCCAGAAGGATACCAAGAACGAGTAGGCTCTAAGGGAATGATGGTGGGATGGGCACCCCAACAGAAGGTTCTATCCCATCCTTCAATTGCTTACTTCCTAAGTCACTGTGGTTGGAACTCTACCATGGAAGGTGTAAGCAATGGGCTTCCTTTCTTGTGCTGGCCATATTTTGCTGACCAGCTCTTTAACGAGGGCTACATTTGCGATGTTTGGGAGGTGGGATTGAGGTTTGATAAGAATGAGAGTGGAATCATCCCGAAAGGAGAAATCAAGAACAAGGTGGAACAACATCTTGGAGACGAAAATTATAGAGCAAGGGCTTCTGAACTCAAGGAAATGGCCATCACTAATGTCGAAGAAGGAGGCCAATCTAACAAGATCTTCAAGAATTTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

394

Amino Acids

43.94

Weight (kDa)

4.8

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 217 - 371 3.7e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 481, 610, 835
AccB7I CCANNNNNTGG 1 cut(s) 706
AciI CCGC 1 cut(s) 378
AclWI GGATC 1 cut(s) 126
AcoI YGGCCR 2 cut(s) 944, 1122
AcsI RAATTY 3 cut(s) 142, 400, 1171
AfaI GTAC 1 cut(s) 775
AfiI CCNNNNNNNGG 4 cut(s) 41, 640, 706, 847
AgsI TTSAA 6 cut(s) 97, 195, 400, 722, 867, 1168
AjuI GAANNNNNNNTTGG 6 cut(s) 722, 754, 834, 866, 1059, 1091
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 5 cut(s) 181, 235, 384, 672, 964
AluI AGCT 5 cut(s) 181, 235, 384, 672, 964
Alw26I GTCTC 1 cut(s) 1074
AlwI GGATC 1 cut(s) 126
AlwNI CAGNNNCTG 1 cut(s) 550
Ama87I CYCGRG 1 cut(s) 614
AoxI GGCC 6 cut(s) 463, 631, 755, 944, 1122, 1147
ApeKI GCWGC 3 cut(s) 381, 384, 596
ApoI RAATTY 3 cut(s) 142, 400, 1171
AseI ATTAAT 1 cut(s) 438
AspA2I CCTAGG 1 cut(s) 272
AspS9I GGNCC 2 cut(s) 286, 632
AvaI CYCGRG 1 cut(s) 614
AvaII GGWCC 1 cut(s) 286
AvrII CCTAGG 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 838
BalI TGGCCA 2 cut(s) 946, 1124
BanI GGYRCC 3 cut(s) 481, 610, 835
BanII GRGCYC 1 cut(s) 364
BbsI GAAGAC 2 cut(s) 509, 516
BbvI GCAGC 3 cut(s) 371, 393, 608
BccI CCATC 9 cut(s) 55, 197, 440, 503, 527, 817, 825, 867, 1133
BceAI ACGGC 1 cut(s) 502
BciVI GTATCC 1 cut(s) 785
BclI TGATCA 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 1074
BfaI CTAG 2 cut(s) 236, 273
BfmI CTRYAG 2 cut(s) 385, 542
BfuI GTATCC 1 cut(s) 785
BglII AGATCT 1 cut(s) 1161
BisI GCNGC 4 cut(s) 379, 382, 385, 597
BlnI CCTAGG 1 cut(s) 272
BlsI GCNGC 4 cut(s) 380, 383, 386, 598
BmcAI AGTACT 1 cut(s) 775
Bme18I GGWCC 1 cut(s) 286
BmeT110I CYCGRG 1 cut(s) 614
BmgT120I GGNCC 2 cut(s) 286, 632
BmiI GGNNCC 3 cut(s) 483, 612, 837
BmrI ACTGGG 1 cut(s) 688
BmsI GCATC 2 cut(s) 258, 657
BmuI ACTGGG 1 cut(s) 688
BpiI GAAGAC 2 cut(s) 509, 516
BpuEI CTTGAG 1 cut(s) 1097
BsaJI CCNNGG 5 cut(s) 215, 272, 518, 606, 906
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 640, 706, 847
Bse1I ACTGG 2 cut(s) 555, 694
Bse3DI GCAATG 2 cut(s) 336, 928
BseDI CCNNGG 5 cut(s) 215, 272, 518, 606, 906
BseGI GGATG 4 cut(s) 178, 836, 859, 1035
BseLI CCNNNNNNNGG 4 cut(s) 41, 640, 706, 847
BseMI GCAATG 2 cut(s) 336, 928
BseMII CTCAG 1 cut(s) 588
BseNI ACTGG 2 cut(s) 555, 694
BseSI GKGCMC 1 cut(s) 838
BseXI GCAGC 3 cut(s) 371, 393, 608
BseYI CCCAGC 2 cut(s) 34, 558
BshFI GGCC 6 cut(s) 465, 633, 757, 946, 1124, 1149
BshNI GGYRCC 3 cut(s) 481, 610, 835
BsiHKCI CYCGRG 1 cut(s) 614
BslI CCNNNNNNNGG 4 cut(s) 41, 640, 706, 847
BsmAI GTCTC 1 cut(s) 1074
BsmBI CGTCTC 1 cut(s) 1074
BsnI GGCC 6 cut(s) 465, 633, 757, 946, 1124, 1149
BsoBI CYCGRG 1 cut(s) 614
Bsp1286I GDGCHC 2 cut(s) 364, 838
Bsp143I GATC 4 cut(s) 118, 175, 300, 1161
Bsp19I CCATGG 2 cut(s) 215, 906
BspACI CCGC 1 cut(s) 378
BspANI GGCC 6 cut(s) 465, 633, 757, 946, 1124, 1149
BspCNI CTCAG 1 cut(s) 587
BspHI TCATGA 3 cut(s) 127, 138, 498
BspLI GGNNCC 3 cut(s) 483, 612, 837
BspMAI CTGCAG 2 cut(s) 389, 546
BspPI GGATC 1 cut(s) 126
BspT107I GGYRCC 3 cut(s) 481, 610, 835
BsrDI GCAATG 2 cut(s) 336, 928
BsrI ACTGG 2 cut(s) 555, 694
BssECI CCNNGG 5 cut(s) 215, 272, 518, 606, 906
BssMI GATC 4 cut(s) 118, 175, 300, 1161
BssT1I CCWWGG 4 cut(s) 215, 272, 606, 906
Bst4CI ACNGT 6 cut(s) 75, 417, 454, 679, 726, 890
BstAPI GCANNNNNTGC 1 cut(s) 602
BstC8I GCNNGC 4 cut(s) 8, 556, 646, 944
BstDEI CTNAG 3 cut(s) 574, 813, 881
BstDSI CCRYGG 3 cut(s) 215, 518, 906
BstF5I GGATG 4 cut(s) 178, 836, 859, 1035
BstKTI GATC 4 cut(s) 121, 178, 303, 1164
BstMAI GTCTC 1 cut(s) 1074
BstMBI GATC 4 cut(s) 118, 175, 300, 1161
BstMWI GCNNNNNNNGC 4 cut(s) 384, 534, 602, 984
BstNSI RCATGY 2 cut(s) 493, 517
BstSFI CTRYAG 2 cut(s) 385, 542
BstSLI GKGCMC 1 cut(s) 838
BstV1I GCAGC 3 cut(s) 371, 393, 608
BstV2I GAAGAC 2 cut(s) 509, 516
BstX2I RGATCY 1 cut(s) 1161
BstXI CCANNNNNNTGG 1 cut(s) 744
BstYI RGATCY 1 cut(s) 1161
BsuI GTATCC 1 cut(s) 785
BsuRI GGCC 6 cut(s) 465, 633, 757, 946, 1124, 1149
BtgI CCRYGG 3 cut(s) 215, 518, 906
BtgZI GCGATG 1 cut(s) 1002
BtsCI GGATG 4 cut(s) 178, 836, 859, 1035
BtsIMutI CAGTG 2 cut(s) 80, 886
Cac8I GCNNGC 4 cut(s) 8, 556, 646, 944
CaiI CAGNNNCTG 1 cut(s) 550
CciI TCATGA 3 cut(s) 127, 138, 498
Cfr13I GGNCC 2 cut(s) 286, 632
Csp6I GTAC 1 cut(s) 774
CviQI GTAC 1 cut(s) 774
DdeI CTNAG 3 cut(s) 574, 813, 881
DpnI GATC 4 cut(s) 120, 177, 302, 1163
DpnII GATC 4 cut(s) 118, 175, 300, 1161
EaeI YGGCCR 2 cut(s) 944, 1122
Eco130I CCWWGG 4 cut(s) 215, 272, 606, 906
Eco24I GRGCYC 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 614
EcoO109I RGGNCCY 2 cut(s) 286, 632
EcoRI GAATTC 1 cut(s) 142
EcoT14I CCWWGG 4 cut(s) 215, 272, 606, 906
EcoT38I GRGCYC 1 cut(s) 364
ErhI CCWWGG 4 cut(s) 215, 272, 606, 906
Esp3I CGTCTC 1 cut(s) 1074
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 4 cut(s) 379, 382, 385, 597
FokI GGATG 4 cut(s) 185, 843, 846, 1022
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 4 cut(s) 379, 382, 385, 597
FspBI CTAG 2 cut(s) 236, 273
GluI GCNGC 4 cut(s) 379, 382, 385, 597
GsaI CCCAGC 2 cut(s) 38, 562
HaeIII GGCC 6 cut(s) 465, 633, 757, 946, 1124, 1149
HindIII AAGCTT 1 cut(s) 670
HinfI GANTC 5 cut(s) 93, 135, 432, 472, 1032
Hpy188I TCNGA 2 cut(s) 769, 1108
HpyAV CCTTC 6 cut(s) 422, 782, 841, 873, 905, 1136
HpyCH4III ACNGT 6 cut(s) 75, 417, 454, 679, 726, 890
HpyCH4V TGCA 4 cut(s) 387, 544, 570, 662
HpyF10VI GCNNNNNNNGC 4 cut(s) 384, 534, 602, 984
HpyF3I CTNAG 3 cut(s) 574, 813, 881
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 4 cut(s) 118, 175, 300, 1161
Lsp1109I GCAGC 3 cut(s) 371, 393, 608
LweI GCATC 2 cut(s) 258, 657
MaeI CTAG 2 cut(s) 236, 273
MaeIII GTNAC 3 cut(s) 100, 148, 884
MalI GATC 4 cut(s) 120, 177, 302, 1163
MboI GATC 4 cut(s) 118, 175, 300, 1161
MboII GAAGA 6 cut(s) 310, 326, 514, 521, 1151, 1156
MfeI CAATTG 1 cut(s) 867
MflI RGATCY 1 cut(s) 1161
MhlI GDGCHC 2 cut(s) 364, 838
MlsI TGGCCA 2 cut(s) 946, 1124
MluCI AATT 9 cut(s) 51, 142, 195, 400, 704, 867, 1087, 1171, 1176
MluNI TGGCCA 2 cut(s) 946, 1124
MlyI GAGTC 1 cut(s) 144
MmeI TCCRAC 2 cut(s) 261, 875
Mox20I TGGCCA 2 cut(s) 946, 1124
MscI TGGCCA 2 cut(s) 946, 1124
MseI TTAA 6 cut(s) 80, 419, 438, 969, 1175, 1180
MslI CAYNNNNRTG 3 cut(s) 107, 126, 742
Msp20I TGGCCA 2 cut(s) 946, 1124
MspA1I CMGCKG 1 cut(s) 384
MunI CAATTG 1 cut(s) 867
MwoI GCNNNNNNNGC 4 cut(s) 384, 534, 602, 984
NcoI CCATGG 2 cut(s) 215, 906
NdeII GATC 4 cut(s) 118, 175, 300, 1161
NlaIV GGNNCC 3 cut(s) 483, 612, 837
NmuCI GTSAC 3 cut(s) 100, 148, 884
NspI RCATGY 2 cut(s) 493, 517
OliI CACNNNNGTG 1 cut(s) 107
PagI TCATGA 3 cut(s) 127, 138, 498
PfeI GAWTC 4 cut(s) 93, 432, 472, 1032
PflMI CCANNNNNTGG 1 cut(s) 706
PkrI GCNGC 4 cut(s) 380, 383, 386, 598
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 286
PshBI ATTAAT 1 cut(s) 438
Psp5II RGGWCCY 1 cut(s) 286
PspFI CCCAGC 2 cut(s) 34, 558
PspN4I GGNNCC 3 cut(s) 483, 612, 837
PspPI GGNCC 2 cut(s) 286, 632
PspPPI RGGWCCY 1 cut(s) 286
PstI CTGCAG 2 cut(s) 389, 546
PstNI CAGNNNCTG 1 cut(s) 550
PsuI RGATCY 1 cut(s) 1161
PvuII CAGCTG 1 cut(s) 384
RsaI GTAC 1 cut(s) 775
RsaNI GTAC 1 cut(s) 774
RseI CAYNNNNRTG 3 cut(s) 107, 126, 742
SaqAI TTAA 6 cut(s) 80, 419, 438, 969, 1175, 1180
SatI GCNGC 4 cut(s) 379, 382, 385, 597
Sau3AI GATC 4 cut(s) 118, 175, 300, 1161
Sau96I GGNCC 2 cut(s) 286, 632
ScaI AGTACT 1 cut(s) 775
SchI GAGTC 1 cut(s) 144
SduI GDGCHC 2 cut(s) 364, 838
SfaNI GCATC 2 cut(s) 258, 657
SfcI CTRYAG 2 cut(s) 385, 542
SinI GGWCC 1 cut(s) 286
SmiMI CAYNNNNRTG 3 cut(s) 107, 126, 742
SmlI CTYRAG 1 cut(s) 1112
SmoI CTYRAG 1 cut(s) 1112
Sse9I AATT 9 cut(s) 51, 142, 195, 400, 704, 867, 1087, 1171, 1176
SsiI CCGC 1 cut(s) 378
SspMI CTAG 2 cut(s) 236, 273
StyI CCWWGG 4 cut(s) 215, 272, 606, 906
TaaI ACNGT 6 cut(s) 75, 417, 454, 679, 726, 890
TaqI TCGA 2 cut(s) 588, 1137
TaqII GACCGA 1 cut(s) 521
TasI AATT 9 cut(s) 51, 142, 195, 400, 704, 867, 1087, 1171, 1176
TatI WGTACW 1 cut(s) 773
TauI GCSGC 1 cut(s) 381
TfiI GAWTC 4 cut(s) 93, 432, 472, 1032
Tru1I TTAA 6 cut(s) 80, 419, 438, 969, 1175, 1180
Tru9I TTAA 6 cut(s) 80, 419, 438, 969, 1175, 1180
TscAI CASTG 2 cut(s) 80, 893
TseFI GTSAC 3 cut(s) 100, 148, 884
TseI GCWGC 3 cut(s) 381, 384, 596
Tsp45I GTSAC 3 cut(s) 100, 148, 884
TspDTI ATGAA 5 cut(s) 155, 171, 173, 441, 515
TspGWI ACGGA 2 cut(s) 131, 136
TspRI CASTG 2 cut(s) 80, 893
Van91I CCANNNNNTGG 1 cut(s) 706
VpaK11BI GGWCC 1 cut(s) 286
VspI ATTAAT 1 cut(s) 438
XapI RAATTY 3 cut(s) 142, 400, 1171
XceI RCATGY 2 cut(s) 493, 517
XmaJI CCTAGG 1 cut(s) 272
XspI CTAG 2 cut(s) 236, 273
ZrmI AGTACT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.