Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000438

Physical Location & Seq

Genomic Coordinates Forward (+)

24433997 .. 24435021

Gene Structure 1025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G255900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAGCTTTCAAGATGCCTAGCCAAACATGGCATCAAGGTCACATCTGTAAATACAGAGCATATTCACATGCAAATGCAAAATGCATTGGCAATGGAGGATGATGACATTGGGTTCATCTATCTTGGATGGGCCCTGGAAATTGCAGAGAAAAAGGCGCTCAAGCGAGCTGCTTTCTGCCGAGGAGCGGCTGCACTTTTGGTACTTGGATTCAGCATTCCAAAGCTGATTGATGAAGGAGTTATTGGCAACGATGGAACTCCCACAAAGGAACAAGTAATTAAGTTATTATCACCAGATATGCCTGGCATGAACACGGCAAACTTGGTGTGGGCATGCCTCGGCAGCAAGGCTTTGCAGAAAAATATGTTTGAACTTATGGTTAGAAACAACAAATCAATAAAATTAGCAGACTGGTTACTTTGCAACTCAACCTATGACCTTGAGCCTGCAGAGATTCTACCAATAGGTCCACTTTTGGCAAGCAACCGTCTCAAAGACTCTGCAGGAAACTTGTGGCTAGGAGACTCTTGTTTAAACTGGCTTGATCAACAACCACCACAATCATTCATATATGTGCTTTTGGTAGGTTCACAGTTTTTGATCCAAAACAATTCGAAGAACTGGCCTTGGGGCTTGAGCTCTCCAATAGACCATTTTGTGGGTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

224

Amino Acids

24.65

Weight (kDa)

5.8

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02100
fragaria_vesca	FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica	MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica	Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis	pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis	RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata	RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora	Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii	Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa	Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha	Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana	Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	661
AccBSI	CCGCTC	1 cut(s)	188
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	1 cut(s)	598
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	2 cut(s)	187, 661
AgsI	TTSAA	2 cut(s)	12, 374
AjnI	CCWGG	2 cut(s)	135, 304
AjuI	GAANNNNNNNTTGG	2 cut(s)	228, 260
AluBI	AGCT	4 cut(s)	7, 170, 226, 642
AluI	AGCT	4 cut(s)	7, 170, 226, 642
Alw21I	GWGCWC	1 cut(s)	644
Alw26I	GTCTC	2 cut(s)	497, 519
AlwI	GGATC	1 cut(s)	598
AoxI	GGCC	2 cut(s)	132, 626
ApaI	GGGCCC	1 cut(s)	136
ApeKI	GCWGC	3 cut(s)	170, 191, 345
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	3 cut(s)	132, 133, 470
AsuHPI	GGTGA	1 cut(s)	285
AsuII	TTCGAA	1 cut(s)	617
AvaII	GGWCC	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	136
BanII	GRGCYC	2 cut(s)	136, 644
Bbv12I	GWGCWC	1 cut(s)	644
BbvI	GCAGC	3 cut(s)	157, 178, 357
BccI	CCATC	2 cut(s)	123, 248
BceAI	ACGGC	1 cut(s)	333
BciT130I	CCWGG	2 cut(s)	137, 306
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	2 cut(s)	497, 519
BfaI	CTAG	2 cut(s)	20, 521
BfmI	CTRYAG	2 cut(s)	450, 504
BfoI	RGCGCY	1 cut(s)	161
BisI	GCNGC	4 cut(s)	171, 189, 192, 346
BlsI	GCNGC	4 cut(s)	172, 190, 193, 347
Bme1390I	CCNGG	2 cut(s)	137, 306
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	3 cut(s)	132, 133, 470
BmiI	GGNNCC	1 cut(s)	134
BmrFI	CCNGG	2 cut(s)	137, 306
BmsI	GCATC	2 cut(s)	5, 42
Bpu14I	TTCGAA	1 cut(s)	617
BpuEI	CTTGAG	3 cut(s)	146, 464, 658
BsaJI	CCNNGG	4 cut(s)	135, 181, 340, 629
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 661
Bse1I	ACTGG	3 cut(s)	419, 545, 629
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	2 cut(s)	137, 306
BseDI	CCNNGG	4 cut(s)	135, 181, 340, 629
BseGI	GGATG	2 cut(s)	106, 134
BseLI	CCNNNNNNNGG	2 cut(s)	187, 661
BseMI	GCAATG	1 cut(s)	99
BseNI	ACTGG	3 cut(s)	419, 545, 629
BseRI	GAGGAG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	3 cut(s)	157, 178, 357
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	134, 628
BsiHKAI	GWGCWC	1 cut(s)	644
BslI	CCNNNNNNNGG	2 cut(s)	187, 661
BsmAI	GTCTC	2 cut(s)	497, 519
BsmBI	CGTCTC	1 cut(s)	497
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	2 cut(s)	134, 628
Bsp119I	TTCGAA	1 cut(s)	617
Bsp120I	GGGCCC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	136, 644
Bsp143I	GATC	2 cut(s)	547, 603
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	2 cut(s)	134, 628
BspLI	GGNNCC	1 cut(s)	134
BspMAI	CTGCAG	2 cut(s)	454, 508
BspPI	GGATC	1 cut(s)	598
BspT104I	TTCGAA	1 cut(s)	617
BsrBI	CCGCTC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	3 cut(s)	419, 545, 629
BssECI	CCNNGG	4 cut(s)	135, 181, 340, 629
BssMI	GATC	2 cut(s)	547, 603
BssT1I	CCWWGG	1 cut(s)	629
Bst2UI	CCWGG	2 cut(s)	137, 306
Bst4CI	ACNGT	2 cut(s)	491, 597
BstBI	TTCGAA	1 cut(s)	617
BstC8I	GCNNGC	4 cut(s)	168, 337, 450, 484
BstF5I	GGATG	2 cut(s)	106, 134
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	2 cut(s)	550, 606
BstMAI	GTCTC	2 cut(s)	497, 519
BstMBI	GATC	2 cut(s)	547, 603
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstNI	CCWGG	2 cut(s)	137, 306
BstNSI	RCATGY	2 cut(s)	73, 339
BstSCI	CCNGG	2 cut(s)	135, 304
BstSFI	CTRYAG	2 cut(s)	450, 504
BstSLI	GKGCMC	1 cut(s)	136
BstV1I	GCAGC	3 cut(s)	157, 178, 357
BsuRI	GGCC	2 cut(s)	134, 628
BtsCI	GGATG	2 cut(s)	106, 134
Cac8I	GCNNGC	4 cut(s)	168, 337, 450, 484
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	3 cut(s)	132, 133, 470
Csp6I	GTAC	1 cut(s)	203
CviAII	CATG	4 cut(s)	29, 70, 310, 336
CviQI	GTAC	1 cut(s)	203
DpnI	GATC	2 cut(s)	549, 605
DpnII	GATC	2 cut(s)	547, 603
DraI	TTTAAA	1 cut(s)	537
Ecl136II	GAGCTC	1 cut(s)	642
Eco130I	CCWWGG	1 cut(s)	629
Eco24I	GRGCYC	2 cut(s)	136, 644
Eco47I	GGWCC	1 cut(s)	470
Eco53kI	GAGCTC	1 cut(s)	642
EcoICRI	GAGCTC	1 cut(s)	642
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	135, 304
EcoT14I	CCWWGG	1 cut(s)	629
EcoT22I	ATGCAT	1 cut(s)	88
EcoT38I	GRGCYC	2 cut(s)	136, 644
ErhI	CCWWGG	1 cut(s)	629
Esp3I	CGTCTC	1 cut(s)	497
FaeI	CATG	4 cut(s)	32, 73, 313, 339
FatI	CATG	4 cut(s)	28, 69, 309, 335
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	4 cut(s)	171, 189, 192, 346
FokI	GGATG	2 cut(s)	113, 141
FriOI	GRGCYC	2 cut(s)	136, 644
Fsp4HI	GCNGC	4 cut(s)	171, 189, 192, 346
FspBI	CTAG	2 cut(s)	20, 521
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	4 cut(s)	171, 189, 192, 346
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	134, 628
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	4 cut(s)	32, 73, 313, 339
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	4 cut(s)	210, 457, 500, 527
HphI	GGTGA	1 cut(s)	285
Hpy166II	GTNNAC	2 cut(s)	473, 593
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	2 cut(s)	473, 593
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	2 cut(s)	491, 597
HpyCH4V	TGCA	9 cut(s)	73, 79, 86, 146, 194, 358, 426, 452, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
Hsp92II	CATG	4 cut(s)	32, 73, 313, 339
HspAI	GCGC	1 cut(s)	158
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	2 cut(s)	547, 603
LmnI	GCTCC	2 cut(s)	4, 185
Lsp1109I	GCAGC	3 cut(s)	157, 178, 357
LweI	GCATC	2 cut(s)	5, 42
MaeI	CTAG	2 cut(s)	20, 521
MaeIII	GTNAC	2 cut(s)	40, 417
MalI	GATC	2 cut(s)	549, 605
MbiI	CCGCTC	1 cut(s)	188
MboI	GATC	2 cut(s)	547, 603
MboII	GAAGA	1 cut(s)	631
MhlI	GDGCHC	2 cut(s)	136, 644
MluCI	AATT	4 cut(s)	141, 279, 404, 613
MlyI	GAGTC	2 cut(s)	494, 521
MnlI	CCTC	3 cut(s)	91, 176, 350
Mph1103I	ATGCAT	1 cut(s)	88
MseI	TTAA	2 cut(s)	282, 536
MslI	CAYNNNNRTG	2 cut(s)	74, 575
MspR9I	CCNGG	2 cut(s)	137, 306
MssI	GTTTAAAC	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	2 cut(s)	137, 306
MwoI	GCNNNNNNNGC	1 cut(s)	345
NdeII	GATC	2 cut(s)	547, 603
NlaIII	CATG	4 cut(s)	32, 73, 313, 339
NlaIV	GGNNCC	1 cut(s)	134
NmeAIII	GCCGAG	2 cut(s)	206, 321
NmuCI	GTSAC	1 cut(s)	40
NsiI	ATGCAT	1 cut(s)	88
NspI	RCATGY	2 cut(s)	73, 339
NspV	TTCGAA	1 cut(s)	617
PaeI	GCATGC	1 cut(s)	339
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	210, 457
PflMI	CCANNNNNTGG	1 cut(s)	661
PkrI	GCNGC	4 cut(s)	172, 190, 193, 347
PleI	GAGTC	2 cut(s)	494, 521
PmeI	GTTTAAAC	1 cut(s)	537
PpsI	GAGTC	2 cut(s)	494, 521
Psp124BI	GAGCTC	1 cut(s)	644
Psp6I	CCWGG	2 cut(s)	135, 304
PspGI	CCWGG	2 cut(s)	135, 304
PspN4I	GGNNCC	1 cut(s)	134
PspOMI	GGGCCC	1 cut(s)	132
PspPI	GGNCC	3 cut(s)	132, 133, 470
PstI	CTGCAG	2 cut(s)	454, 508
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
RseI	CAYNNNNRTG	2 cut(s)	74, 575
SacI	GAGCTC	1 cut(s)	644
SaqAI	TTAA	2 cut(s)	282, 536
SatI	GCNGC	4 cut(s)	171, 189, 192, 346
Sau3AI	GATC	2 cut(s)	547, 603
Sau96I	GGNCC	3 cut(s)	132, 133, 470
SchI	GAGTC	2 cut(s)	494, 521
ScrFI	CCNGG	2 cut(s)	137, 306
SduI	GDGCHC	2 cut(s)	136, 644
SetI	ASST	9 cut(s)	9, 42, 172, 228, 437, 444, 472, 592, 644
SfaNI	GCATC	2 cut(s)	5, 42
SfcI	CTRYAG	2 cut(s)	450, 504
SfuI	TTCGAA	1 cut(s)	617
SinI	GGWCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	2 cut(s)	74, 575
SmlI	CTYRAG	3 cut(s)	161, 443, 637
SmoI	CTYRAG	3 cut(s)	161, 443, 637
SphI	GCATGC	1 cut(s)	339
Sse9I	AATT	4 cut(s)	141, 279, 404, 613
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	2 cut(s)	20, 521
SstI	GAGCTC	1 cut(s)	644
StyD4I	CCNGG	2 cut(s)	135, 304
StyI	CCWWGG	1 cut(s)	629
TaaI	ACNGT	2 cut(s)	491, 597
TaqI	TCGA	1 cut(s)	617
TasI	AATT	4 cut(s)	141, 279, 404, 613
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	210, 457
Tru1I	TTAA	2 cut(s)	282, 536
Tru9I	TTAA	2 cut(s)	282, 536
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	3 cut(s)	170, 191, 345
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	4 cut(s)	106, 249, 326, 559
Van91I	CCANNNNNTGG	1 cut(s)	661
VpaK11BI	GGWCC	1 cut(s)	470
XceI	RCATGY	2 cut(s)	73, 339
XspI	CTAG	2 cut(s)	20, 521
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.