RLG00000021579

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000438
Physical Location & Seq
Forward (+)
76571277 .. 76572156
880 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021579

Sequence Viewer

Length: 519 bp
ATGCCTGTGAAGTTGGAGGAGCTCATACAGAAGATCAACCAAGGGGAAGGTGATAAAGTCACTTGTGTCATTGCTGACGAGAGTTGCGGATGGGCTCTGGAAGTGGCACAAAAAATGAAGATCAGGCGGGTAGTTGCCTTTTGGCCTGCATCAGCTGCAGCTTTGGAGGTGATACTGTGTATTCCCAAGTTTATTCAGGAAGGAATTATTGACAAAGATGGATCTGTCTTGAAAAGCCAGATGGTTGAGTTGGCACCAAACATGCCCACAATGAAAACTACAGACTTCATATGGGCGTCCATTGGTGACTCAACCACTCAGGAAATCATATTCCAAGTTATGGAAAGAAGCAACAAGACCGTGAAATTGGCTGACAGACTAGTTTGCAACTCTGCATTCGACCTCGAACCAGCAGCATTCACCTTGGAACCAACAACATTCACCTTGGCACCAGACATTTTACCTATAGGCCCGCTTTTGGCAAGCAGCCGGCTTGGAAAAACAGCCGGCAGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

173

Amino Acids

18.77

Weight (kDa)

4.94

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 253, 448
AccB7I CCANNNNNTGG 1 cut(s) 340
AciI CCGC 3 cut(s) 87, 127, 473
AclWI GGATC 1 cut(s) 229
AcyI GRCGYC 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 340, 478
AgsI TTSAA 1 cut(s) 232
AhlI ACTAGT 1 cut(s) 379
AluBI AGCT 4 cut(s) 22, 155, 161, 513
AluI AGCT 4 cut(s) 22, 155, 161, 513
Alw21I GWGCWC 1 cut(s) 24
AlwI GGATC 1 cut(s) 229
AoxI GGCC 2 cut(s) 143, 469
ApeKI GCWGC 5 cut(s) 155, 158, 413, 486, 510
AspS9I GGNCC 1 cut(s) 470
AsuHPI GGTGA 5 cut(s) 62, 181, 317, 412, 433
BanI GGYRCC 2 cut(s) 253, 448
BanII GRGCYC 2 cut(s) 24, 97
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 4 cut(s) 142, 170, 425, 498
BccI CCATC 3 cut(s) 84, 212, 235
BcuI ACTAGT 1 cut(s) 379
BfaI CTAG 2 cut(s) 380, 517
BfmI CTRYAG 3 cut(s) 156, 279, 465
BisI GCNGC 5 cut(s) 156, 159, 414, 487, 511
BlsI GCNGC 5 cut(s) 157, 160, 415, 488, 512
BmgT120I GGNCC 1 cut(s) 470
BmiI GGNNCC 3 cut(s) 255, 429, 450
BmsI GCATC 1 cut(s) 158
BsaHI GRCGYC 1 cut(s) 296
BsaJI CCNNGG 3 cut(s) 40, 423, 444
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 478
Bse118I RCCGGY 2 cut(s) 489, 506
Bse3DI GCAATG 1 cut(s) 69
BseDI CCNNGG 3 cut(s) 40, 423, 444
BseGI GGATG 1 cut(s) 95
BseLI CCNNNNNNNGG 2 cut(s) 340, 478
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 332
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 4 cut(s) 142, 170, 425, 498
BshFI GGCC 2 cut(s) 145, 471
BshNI GGYRCC 2 cut(s) 253, 448
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 2 cut(s) 490, 507
BslI CCNNNNNNNGG 2 cut(s) 340, 478
BsmI GAATGC 2 cut(s) 395, 416
BsnI GGCC 2 cut(s) 145, 471
Bsp1286I GDGCHC 2 cut(s) 24, 97
Bsp143I GATC 3 cut(s) 33, 120, 221
BspACI CCGC 3 cut(s) 87, 127, 473
BspANI GGCC 2 cut(s) 145, 471
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 3 cut(s) 255, 429, 450
BspMAI CTGCAG 1 cut(s) 160
BspPI GGATC 1 cut(s) 229
BspT107I GGYRCC 2 cut(s) 253, 448
BsrDI GCAATG 1 cut(s) 69
BsrFI RCCGGY 2 cut(s) 489, 506
BssAI RCCGGY 2 cut(s) 489, 506
BssECI CCNNGG 3 cut(s) 40, 423, 444
BssMI GATC 3 cut(s) 33, 120, 221
BssNI GRCGYC 1 cut(s) 296
BssT1I CCWWGG 3 cut(s) 40, 423, 444
Bst4CI ACNGT 2 cut(s) 177, 361
BstACI GRCGYC 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 155
BstC8I GCNNGC 5 cut(s) 147, 473, 484, 491, 508
BstDEI CTNAG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 95
BstKTI GATC 3 cut(s) 36, 123, 224
BstMBI GATC 3 cut(s) 33, 120, 221
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNSI RCATGY 1 cut(s) 265
BstSFI CTRYAG 3 cut(s) 156, 279, 465
BstV1I GCAGC 4 cut(s) 142, 170, 425, 498
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BsuRI GGCC 2 cut(s) 145, 471
BtsCI GGATG 1 cut(s) 95
Cac8I GCNNGC 5 cut(s) 147, 473, 484, 491, 508
Cfr10I RCCGGY 2 cut(s) 489, 506
Cfr13I GGNCC 1 cut(s) 470
CseI GACGC 1 cut(s) 285
CviAII CATG 1 cut(s) 262
DdeI CTNAG 1 cut(s) 318
DpnI GATC 3 cut(s) 35, 122, 223
DpnII GATC 3 cut(s) 33, 120, 221
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 3 cut(s) 40, 423, 444
Eco24I GRGCYC 2 cut(s) 24, 97
Eco53kI GAGCTC 1 cut(s) 22
EcoICRI GAGCTC 1 cut(s) 22
EcoT14I CCWWGG 3 cut(s) 40, 423, 444
EcoT38I GRGCYC 2 cut(s) 24, 97
ErhI CCWWGG 3 cut(s) 40, 423, 444
FaeI CATG 1 cut(s) 265
FaiI YATR 7 cut(s) 26, 263, 290, 292, 329, 341, 467
FatI CATG 1 cut(s) 261
FauI CCCGC 2 cut(s) 120, 480
FauNDI CATATG 1 cut(s) 290
Fnu4HI GCNGC 5 cut(s) 156, 159, 414, 487, 511
FokI GGATG 1 cut(s) 102
FriOI GRGCYC 2 cut(s) 24, 97
Fsp4HI GCNGC 5 cut(s) 156, 159, 414, 487, 511
FspBI CTAG 2 cut(s) 380, 517
GluI GCNGC 5 cut(s) 156, 159, 414, 487, 511
HaeIII GGCC 2 cut(s) 145, 471
HapII CCGG 2 cut(s) 490, 507
HgaI GACGC 1 cut(s) 285
Hin1I GRCGYC 1 cut(s) 296
Hin1II CATG 1 cut(s) 265
HinfI GANTC 1 cut(s) 308
HpaII CCGG 2 cut(s) 490, 507
HphI GGTGA 5 cut(s) 62, 181, 317, 412, 433
Hpy188III TCNNGA 4 cut(s) 98, 197, 229, 320
HpyAV CCTTC 2 cut(s) 41, 194
HpyCH4III ACNGT 2 cut(s) 177, 361
HpyCH4V TGCA 4 cut(s) 149, 158, 387, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 318
Hsp92I GRCGYC 1 cut(s) 296
Hsp92II CATG 1 cut(s) 265
KroI GCCGGC 2 cut(s) 489, 506
KroNI GCCGGC 2 cut(s) 491, 508
Kzo9I GATC 3 cut(s) 33, 120, 221
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 4 cut(s) 142, 170, 425, 498
LweI GCATC 1 cut(s) 158
MaeI CTAG 2 cut(s) 380, 517
MaeIII GTNAC 2 cut(s) 58, 305
MalI GATC 3 cut(s) 35, 122, 223
MboI GATC 3 cut(s) 33, 120, 221
MboII GAAGA 2 cut(s) 43, 130
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 2 cut(s) 24, 97
MluCI AATT 2 cut(s) 204, 365
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 3 cut(s) 10, 160, 413
MroNI GCCGGC 2 cut(s) 489, 506
MspA1I CMGCKG 1 cut(s) 155
MspI CCGG 2 cut(s) 490, 507
Mva1269I GAATGC 2 cut(s) 395, 416
MwoI GCNNNNNNNGC 1 cut(s) 155
NaeI GCCGGC 2 cut(s) 491, 508
NdeI CATATG 1 cut(s) 290
NdeII GATC 3 cut(s) 33, 120, 221
NgoMIV GCCGGC 2 cut(s) 489, 506
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 3 cut(s) 255, 429, 450
NmuCI GTSAC 2 cut(s) 58, 305
NspI RCATGY 1 cut(s) 265
PctI GAATGC 2 cut(s) 395, 416
PdiI GCCGGC 2 cut(s) 491, 508
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 5 cut(s) 157, 160, 415, 488, 512
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
Psp124BI GAGCTC 1 cut(s) 24
PspN4I GGNNCC 3 cut(s) 255, 429, 450
PspPI GGNCC 1 cut(s) 470
PstI CTGCAG 1 cut(s) 160
PsuI RGATCY 1 cut(s) 221
PvuII CAGCTG 1 cut(s) 155
SacI GAGCTC 1 cut(s) 24
SatI GCNGC 5 cut(s) 156, 159, 414, 487, 511
Sau3AI GATC 3 cut(s) 33, 120, 221
Sau96I GGNCC 1 cut(s) 470
SchI GAGTC 1 cut(s) 302
SduI GDGCHC 2 cut(s) 24, 97
SfaNI GCATC 1 cut(s) 158
SfcI CTRYAG 3 cut(s) 156, 279, 465
SpeI ACTAGT 1 cut(s) 379
Sse9I AATT 2 cut(s) 204, 365
SsiI CCGC 3 cut(s) 87, 127, 473
SspMI CTAG 2 cut(s) 380, 517
SstI GAGCTC 1 cut(s) 24
StyI CCWWGG 3 cut(s) 40, 423, 444
TaaI ACNGT 2 cut(s) 177, 361
TaqI TCGA 2 cut(s) 399, 405
TasI AATT 2 cut(s) 204, 365
TseFI GTSAC 2 cut(s) 58, 305
TseI GCWGC 5 cut(s) 155, 158, 413, 486, 510
Tsp45I GTSAC 2 cut(s) 58, 305
TspDTI ATGAA 3 cut(s) 131, 277, 287
Van91I CCANNNNNTGG 1 cut(s) 340
XceI RCATGY 1 cut(s) 265
XspI CTAG 2 cut(s) 380, 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.