RchiOBHm_Chr2g0165991

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000438
Physical Location & Seq
Forward (+)
80826577 .. 80826951
375 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53391

Sequence Viewer

Length: 375 bp
ATGGTAGGATGGGCCCCCCATCAGAAGGTTCTGGCCCATCCTTCAATTGCTTGCTTCCTAAGCCACTGTGGTTGGAACTCTACCTTGGAAGGTCTAAGCAATAGGGTTCATTTCTTGTGTTGGCCATACTTCGCGGACCAGTTCCTTGATAAGAGTTACATTTGTAATGTTTGGAAGGTGGGATTGAAGTTTGATAAGAATGAGAATGGGATCATTCCTACAGGAGAAATTAACAAGAAGGTGGAACAACTTCTTGGCGACGAAAATTTCAGAGCTAGGGCTTCAAAACTCAAGGAAATGGCCATGACTAGGGTCAAAGAAGGTGGCCAGTCTAACAAGATATATAAGAATTTCATTGAGTGGATGAAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

124

Amino Acids

14.3

Weight (kDa)

9.1

Isoelectric Point (pI)

21.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 2 - 97 1e-11 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 134
AciI CCGC 1 cut(s) 134
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 3 cut(s) 122, 300, 325
AcsI RAATTY 2 cut(s) 265, 349
AfiI CCNNNNNNNGG 2 cut(s) 25, 309
AgsI TTSAA 3 cut(s) 45, 187, 285
AjuI GAANNNNNNNTTGG 4 cut(s) 68, 100, 237, 269
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
AlwI GGATC 1 cut(s) 218
AoxI GGCC 5 cut(s) 12, 33, 122, 300, 325
ApaI GGGCCC 1 cut(s) 16
ApoI RAATTY 2 cut(s) 265, 349
Asp700I GAANNNNTTC 1 cut(s) 249
AspS9I GGNCC 4 cut(s) 12, 13, 34, 136
AvaII GGWCC 1 cut(s) 136
BaeGI GKGCMC 1 cut(s) 16
BalI TGGCCA 3 cut(s) 124, 302, 327
BanII GRGCYC 1 cut(s) 16
BccI CCATC 3 cut(s) 3, 27, 45
BfaI CTAG 2 cut(s) 276, 309
BfmI CTRYAG 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 4 cut(s) 12, 13, 34, 136
BmiI GGNNCC 2 cut(s) 14, 15
BoxI GACNNNNGTC 1 cut(s) 311
Bpu10I CCTNAGC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 309
Bse1I ACTGG 2 cut(s) 139, 328
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 3 cut(s) 14, 37, 369
BseLI CCNNNNNNNGG 2 cut(s) 25, 309
BseNI ACTGG 2 cut(s) 139, 328
BseSI GKGCMC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 5 cut(s) 14, 35, 124, 302, 327
BslI CCNNNNNNNGG 2 cut(s) 25, 309
BsnI GGCC 5 cut(s) 14, 35, 124, 302, 327
Bsp120I GGGCCC 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 210
BspACI CCGC 1 cut(s) 134
BspANI GGCC 5 cut(s) 14, 35, 124, 302, 327
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 2 cut(s) 14, 15
BspPI GGATC 1 cut(s) 218
BsrI ACTGG 2 cut(s) 139, 328
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 2 cut(s) 59, 95
BstF5I GGATG 3 cut(s) 14, 37, 369
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 1 cut(s) 213
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstPAI GACNNNNGTC 1 cut(s) 311
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 16
BstUI CGCG 1 cut(s) 134
BsuRI GGCC 5 cut(s) 14, 35, 124, 302, 327
BtsCI GGATG 3 cut(s) 14, 37, 369
BtsIMutI CAGTG 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 52
Cfr13I GGNCC 4 cut(s) 12, 13, 34, 136
CspCI CAANNNNNGTGG 4 cut(s) 53, 88, 304, 339
CviAII CATG 1 cut(s) 304
CviJI RGCY 8 cut(s) 14, 35, 63, 124, 275, 281, 302, 327
CviKI_1 RGCY 8 cut(s) 14, 35, 63, 124, 275, 281, 302, 327
DdeI CTNAG 2 cut(s) 59, 95
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
EaeI YGGCCR 3 cut(s) 122, 300, 325
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 307
FaiI YATR 5 cut(s) 127, 305, 343, 345, 373
FatI CATG 1 cut(s) 303
FokI GGATG 2 cut(s) 21, 24
FriOI GRGCYC 1 cut(s) 16
FspBI CTAG 2 cut(s) 276, 309
HaeIII GGCC 5 cut(s) 14, 35, 124, 302, 327
Hin1II CATG 1 cut(s) 307
Hpy188I TCNGA 2 cut(s) 24, 272
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 6 cut(s) 19, 51, 83, 169, 232, 314
HpyCH4III ACNGT 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpyF3I CTNAG 2 cut(s) 59, 95
Hsp92II CATG 1 cut(s) 307
Kzo9I GATC 1 cut(s) 210
LpnPI CCDG 4 cut(s) 17, 152, 207, 341
MaeI CTAG 2 cut(s) 276, 309
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MfeI CAATTG 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 16
MlsI TGGCCA 3 cut(s) 124, 302, 327
MluCI AATT 4 cut(s) 45, 228, 265, 349
MluNI TGGCCA 3 cut(s) 124, 302, 327
MmeI TCCRAC 1 cut(s) 53
Mox20I TGGCCA 3 cut(s) 124, 302, 327
MroXI GAANNNNTTC 1 cut(s) 249
MscI TGGCCA 3 cut(s) 124, 302, 327
MseI TTAA 1 cut(s) 231
Msp20I TGGCCA 3 cut(s) 124, 302, 327
MunI CAATTG 1 cut(s) 45
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 60
NdeII GATC 1 cut(s) 210
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 2 cut(s) 14, 15
PdmI GAANNNNTTC 1 cut(s) 249
PshAI GACNNNNGTC 1 cut(s) 311
PspN4I GGNNCC 2 cut(s) 14, 15
PspOMI GGGCCC 1 cut(s) 12
PspPI GGNCC 4 cut(s) 12, 13, 34, 136
SaqAI TTAA 1 cut(s) 231
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 4 cut(s) 12, 13, 34, 136
SduI GDGCHC 1 cut(s) 16
SetI ASST 7 cut(s) 30, 86, 94, 180, 243, 277, 325
SfcI CTRYAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 4 cut(s) 45, 228, 265, 349
SsiI CCGC 1 cut(s) 134
SspMI CTAG 2 cut(s) 276, 309
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 68
TasI AATT 4 cut(s) 45, 228, 265, 349
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 98, 343
TspRI CASTG 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 2 cut(s) 265, 349
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 2 cut(s) 276, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.