Rmu_sc0006218.1_g000021

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006218.1
OG0000438
Physical Location & Seq
Forward (+)
93095 .. 94379
1285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006218.1_g000021.1.cds

Sequence Viewer

Length: 381 bp
atgcttgtgaagttggaggagctcatacagaagatcaaccgaggggaaggtgataaagtcacttgtgtcattgcttatgagagttgcggatgggctctggaagtggcacgaaaaatgaagatcaggcgggtagttgcattttggcctgcatcagctgtagctttagaggaaatcatattccaagttatggaaagaagcaacaagaccgtgaaattagctgacagactagtttgcaactcagcattcgacctcgaaccagcagcattcaccttggaaccaacaacattcaccttggtaccagacattttacctataggcccgcttttggcgagcagccggcaacttctaggcagaagactcaacttgcctagaatggcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

126

Amino Acids

14.11

Weight (kDa)

8.93

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 295
AccB1I GGYRCC 1 cut(s) 295
AccB7I CCANNNNNTGG 1 cut(s) 187
AciI CCGC 3 cut(s) 87, 127, 320
AfaI GTAC 1 cut(s) 297
AfiI CCNNNNNNNGG 2 cut(s) 187, 325
AhlI ACTAGT 1 cut(s) 226
AluBI AGCT 4 cut(s) 22, 155, 161, 218
AluI AGCT 4 cut(s) 22, 155, 161, 218
Alw21I GWGCWC 1 cut(s) 24
AoxI GGCC 2 cut(s) 143, 316
ApeKI GCWGC 2 cut(s) 260, 333
Asp718I GGTACC 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 3 cut(s) 62, 259, 280
BaeI ACNNNNGTAYC 2 cut(s) 279, 312
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 2 cut(s) 24, 97
BbsI GAAGAC 1 cut(s) 361
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 2 cut(s) 272, 345
BccI CCATC 1 cut(s) 84
BcuI ACTAGT 1 cut(s) 226
BfaI CTAG 3 cut(s) 227, 347, 369
BfmI CTRYAG 2 cut(s) 156, 312
BisI GCNGC 2 cut(s) 261, 334
BlsI GCNGC 2 cut(s) 262, 335
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 2 cut(s) 276, 297
BmsI GCATC 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 361
BsaJI CCNNGG 3 cut(s) 40, 270, 291
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 325
Bse118I RCCGGY 1 cut(s) 336
Bse3DI GCAATG 1 cut(s) 69
BseDI CCNNGG 3 cut(s) 40, 270, 291
BseGI GGATG 1 cut(s) 95
BseLI CCNNNNNNNGG 2 cut(s) 187, 325
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 252
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 272, 345
BshFI GGCC 2 cut(s) 145, 318
BshNI GGYRCC 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 1 cut(s) 337
BslI CCNNNNNNNGG 2 cut(s) 187, 325
BsmI GAATGC 2 cut(s) 242, 263
BsnI GGCC 2 cut(s) 145, 318
Bsp1286I GDGCHC 2 cut(s) 24, 97
Bsp143I GATC 2 cut(s) 33, 120
BspACI CCGC 3 cut(s) 87, 127, 320
BspANI GGCC 2 cut(s) 145, 318
BspCNI CTCAG 1 cut(s) 251
BspLI GGNNCC 2 cut(s) 276, 297
BspT107I GGYRCC 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 336
BssAI RCCGGY 1 cut(s) 336
BssECI CCNNGG 3 cut(s) 40, 270, 291
BssMI GATC 2 cut(s) 33, 120
BssT1I CCWWGG 2 cut(s) 270, 291
Bst4CI ACNGT 1 cut(s) 208
BstC8I GCNNGC 4 cut(s) 147, 320, 331, 338
BstDEI CTNAG 1 cut(s) 238
BstF5I GGATG 1 cut(s) 95
BstKTI GATC 2 cut(s) 36, 123
BstMBI GATC 2 cut(s) 33, 120
BstSFI CTRYAG 2 cut(s) 156, 312
BstV1I GCAGC 2 cut(s) 272, 345
BstV2I GAAGAC 1 cut(s) 361
BsuRI GGCC 2 cut(s) 145, 318
BtsCI GGATG 1 cut(s) 95
Cac8I GCNNGC 4 cut(s) 147, 320, 331, 338
Cfr10I RCCGGY 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 296
CviJI RGCY 9 cut(s) 22, 95, 145, 155, 161, 218, 318, 336, 377
CviKI_1 RGCY 9 cut(s) 22, 95, 145, 155, 161, 218, 318, 336, 377
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 1 cut(s) 238
DpnI GATC 2 cut(s) 35, 122
DpnII GATC 2 cut(s) 33, 120
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 2 cut(s) 270, 291
Eco24I GRGCYC 2 cut(s) 24, 97
Eco53kI GAGCTC 1 cut(s) 22
EcoICRI GAGCTC 1 cut(s) 22
EcoT14I CCWWGG 2 cut(s) 270, 291
EcoT38I GRGCYC 2 cut(s) 24, 97
ErhI CCWWGG 2 cut(s) 270, 291
FaiI YATR 5 cut(s) 26, 78, 176, 188, 314
FauI CCCGC 2 cut(s) 120, 327
Fnu4HI GCNGC 2 cut(s) 261, 334
FokI GGATG 1 cut(s) 102
FriOI GRGCYC 2 cut(s) 24, 97
Fsp4HI GCNGC 2 cut(s) 261, 334
FspBI CTAG 3 cut(s) 227, 347, 369
GluI GCNGC 2 cut(s) 261, 334
HaeIII GGCC 2 cut(s) 145, 318
HapII CCGG 1 cut(s) 337
HinfI GANTC 1 cut(s) 357
HpaII CCGG 1 cut(s) 337
HphI GGTGA 3 cut(s) 62, 259, 280
Hpy188III TCNNGA 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 41
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 3 cut(s) 137, 149, 234
HpyF3I CTNAG 1 cut(s) 238
KpnI GGTACC 1 cut(s) 299
KroI GCCGGC 1 cut(s) 336
KroNI GCCGGC 1 cut(s) 338
Kzo9I GATC 2 cut(s) 33, 120
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 6 cut(s) 83, 109, 159, 270, 312, 350
Lsp1109I GCAGC 2 cut(s) 272, 345
LweI GCATC 1 cut(s) 158
MaeI CTAG 3 cut(s) 227, 347, 369
MaeIII GTNAC 1 cut(s) 58
MalI GATC 2 cut(s) 35, 122
MboI GATC 2 cut(s) 33, 120
MboII GAAGA 3 cut(s) 43, 130, 366
MhlI GDGCHC 2 cut(s) 24, 97
MluCI AATT 1 cut(s) 212
MlyI GAGTC 1 cut(s) 351
MnlI CCTC 4 cut(s) 10, 35, 160, 260
MroNI GCCGGC 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 155
MspI CCGG 1 cut(s) 337
Mva1269I GAATGC 2 cut(s) 242, 263
NaeI GCCGGC 1 cut(s) 338
NdeII GATC 2 cut(s) 33, 120
NgoMIV GCCGGC 1 cut(s) 336
NlaIV GGNNCC 2 cut(s) 276, 297
NmuCI GTSAC 1 cut(s) 58
PctI GAATGC 2 cut(s) 242, 263
PdiI GCCGGC 1 cut(s) 338
PflMI CCANNNNNTGG 1 cut(s) 187
PkrI GCNGC 2 cut(s) 262, 335
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
Psp124BI GAGCTC 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 276, 297
PspPI GGNCC 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 155
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
SacI GAGCTC 1 cut(s) 24
SatI GCNGC 2 cut(s) 261, 334
Sau3AI GATC 2 cut(s) 33, 120
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 351
SduI GDGCHC 2 cut(s) 24, 97
SetI ASST 9 cut(s) 24, 52, 157, 163, 220, 252, 272, 293, 313
SfaNI GCATC 1 cut(s) 158
SfcI CTRYAG 2 cut(s) 156, 312
SpeI ACTAGT 1 cut(s) 226
Sse9I AATT 1 cut(s) 212
SsiI CCGC 3 cut(s) 87, 127, 320
SspMI CTAG 3 cut(s) 227, 347, 369
SstI GAGCTC 1 cut(s) 24
StyI CCWWGG 2 cut(s) 270, 291
TaaI ACNGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 246, 252
TasI AATT 1 cut(s) 212
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 2 cut(s) 260, 333
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 131
Van91I CCANNNNNTGG 1 cut(s) 187
XspI CTAG 3 cut(s) 227, 347, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.