Rh2CG567800

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000438
Physical Location & Seq
Forward (+)
74866178 .. 74872530
6353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG567800.1

Sequence Viewer

Length: 636 bp
ATGAGCAAGCCACATATTTTAGCTATTCCTTACCCAGCACAAGGCCATGTAATTCCCTTGATGGAGTTATCACAGTGCTTAATAAATCATGGCTTCAAAGTCACATTCGTGAATACGGATCATACTCACGAGCGAGTCATGAATGCTGTAGCTGATGAAACTCATAGAAGAGATGATCAGCTTCATCTGGTTTCAATTCCAGATGGGTTAGAACCATGGGAGGACAGGAATGAGCTGGGTCAGTTATCTGAAGCAATATACCGAGTGATGCCTGGGAAGTTGGAGCAGCTCATAGAGAAGATCAATGGAGAGGAAGGTGACAAAATAACTTGTGTCATTGCTGATTTCATTATGGGATGGGCTCTGGAAGTGGCCGAGAAAAAGAATATCAAGAGTGTTTCCTTTTTCCCTGCGGCAGCTGCAGTTCTTGCGTTGAATTTTTGTGTTCCACAGTTAATATGTGTAGGAATCATTAATAATGATGGAGAAATTAACAAGAAGGTGGAACAACTTCTTGGCGACGAAAATTTCAGAGCTAGGGCTTCAAAACTCAAGGAAATGGCCATGACTAGGGTCAAAGAAGGTGGCCAGTCTAACAAGATATATAAGAATTTCATTGAGTGGATGAAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

211

Amino Acids

23.78

Weight (kDa)

5.82

Isoelectric Point (pI)

30.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 6 - 148 3.1e-06 Glycosyltransferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 413
AclWI GGATC 1 cut(s) 126
AcoI YGGCCR 3 cut(s) 372, 561, 586
AcsI RAATTY 3 cut(s) 436, 526, 610
AcuI CTGAAG 1 cut(s) 270
AfiI CCNNNNNNNGG 2 cut(s) 41, 570
AgsI TTSAA 4 cut(s) 97, 195, 436, 546
AjnI CCWGG 1 cut(s) 271
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 7 cut(s) 23, 152, 181, 235, 289, 419, 536
AluI AGCT 7 cut(s) 23, 152, 181, 235, 289, 419, 536
AlwI GGATC 1 cut(s) 126
AoxI GGCC 4 cut(s) 43, 372, 561, 586
ApeKI GCWGC 3 cut(s) 286, 416, 419
ApoI RAATTY 3 cut(s) 436, 526, 610
AseI ATTAAT 1 cut(s) 474
Asp700I GAANNNNTTC 1 cut(s) 510
AsuHPI GGTGA 1 cut(s) 329
BalI TGGCCA 2 cut(s) 563, 588
BanII GRGCYC 1 cut(s) 364
BauI CACGAG 1 cut(s) 128
BbvI GCAGC 3 cut(s) 298, 406, 428
BccI CCATC 4 cut(s) 55, 197, 351, 476
BciT130I CCWGG 1 cut(s) 273
BclI TGATCA 1 cut(s) 175
BfaI CTAG 2 cut(s) 537, 570
BfmI CTRYAG 2 cut(s) 147, 420
BisI GCNGC 4 cut(s) 287, 414, 417, 420
BlsI GCNGC 4 cut(s) 288, 415, 418, 421
Bme1390I CCNGG 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 258
BoxI GACNNNNGTC 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 536
BsaJI CCNNGG 2 cut(s) 215, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 570
Bse1I ACTGG 1 cut(s) 589
Bse3DI GCAATG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 215, 272
BseGI GGATG 2 cut(s) 362, 630
BseLI CCNNNNNNNGG 2 cut(s) 41, 570
BseMI GCAATG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 589
BseXI GCAGC 3 cut(s) 298, 406, 428
BseYI CCCAGC 2 cut(s) 34, 235
BshFI GGCC 4 cut(s) 45, 374, 563, 588
BslI CCNNNNNNNGG 2 cut(s) 41, 570
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 4 cut(s) 45, 374, 563, 588
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 3 cut(s) 118, 175, 300
Bsp19I CCATGG 1 cut(s) 215
BspACI CCGC 1 cut(s) 413
BspANI GGCC 4 cut(s) 45, 374, 563, 588
BspHI TCATGA 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 424
BspPI GGATC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 336
BsrI ACTGG 1 cut(s) 589
BssECI CCNNGG 2 cut(s) 215, 272
BssMI GATC 3 cut(s) 118, 175, 300
BssSI CACGAG 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 215
Bst2BI CACGAG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 75, 453
Bst6I CTCTTC 1 cut(s) 163
BstAPI GCANNNNNTGC 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 8
BstDSI CCRYGG 1 cut(s) 215
BstF5I GGATG 2 cut(s) 362, 630
BstKTI GATC 3 cut(s) 121, 178, 303
BstMBI GATC 3 cut(s) 118, 175, 300
BstMWI GCNNNNNNNGC 2 cut(s) 419, 428
BstNI CCWGG 1 cut(s) 273
BstPAI GACNNNNGTC 1 cut(s) 572
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 2 cut(s) 147, 420
BstV1I GCAGC 3 cut(s) 298, 406, 428
BsuRI GGCC 4 cut(s) 45, 374, 563, 588
BtgI CCRYGG 1 cut(s) 215
BtsCI GGATG 2 cut(s) 362, 630
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 8
CciI TCATGA 1 cut(s) 138
CspCI CAANNNNNGTGG 2 cut(s) 565, 600
CviAII CATG 5 cut(s) 47, 89, 139, 216, 565
DpnI GATC 3 cut(s) 120, 177, 302
DpnII GATC 3 cut(s) 118, 175, 300
EaeI YGGCCR 3 cut(s) 372, 561, 586
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 5 cut(s) 50, 92, 142, 219, 568
FatI CATG 5 cut(s) 46, 88, 138, 215, 564
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 4 cut(s) 287, 414, 417, 420
FokI GGATG 1 cut(s) 369
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 4 cut(s) 287, 414, 417, 420
FspBI CTAG 2 cut(s) 537, 570
GluI GCNGC 4 cut(s) 287, 414, 417, 420
GsaI CCCAGC 2 cut(s) 38, 239
HaeIII GGCC 4 cut(s) 45, 374, 563, 588
Hin1II CATG 5 cut(s) 50, 92, 142, 219, 568
HinfI GANTC 2 cut(s) 135, 468
HphI GGTGA 1 cut(s) 329
Hpy188I TCNGA 2 cut(s) 250, 533
Hpy188III TCNNGA 6 cut(s) 109, 128, 139, 200, 365, 391
Hpy99I CGWCG 1 cut(s) 524
HpyAV CCTTC 3 cut(s) 308, 493, 575
HpyCH4III ACNGT 2 cut(s) 75, 453
HpyCH4V TGCA 1 cut(s) 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 428
Hsp92II CATG 5 cut(s) 50, 92, 142, 219, 568
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 3 cut(s) 118, 175, 300
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 3 cut(s) 298, 406, 428
LweI GCATC 1 cut(s) 258
MaeI CTAG 2 cut(s) 537, 570
MaeIII GTNAC 2 cut(s) 100, 317
MalI GATC 3 cut(s) 120, 177, 302
MboI GATC 3 cut(s) 118, 175, 300
MboII GAAGA 2 cut(s) 180, 310
MhlI GDGCHC 1 cut(s) 364
MlsI TGGCCA 2 cut(s) 563, 588
MluCI AATT 6 cut(s) 51, 195, 436, 489, 526, 610
MluNI TGGCCA 2 cut(s) 563, 588
MlyI GAGTC 1 cut(s) 144
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 2 cut(s) 214, 304
Mox20I TGGCCA 2 cut(s) 563, 588
MroXI GAANNNNTTC 1 cut(s) 510
MscI TGGCCA 2 cut(s) 563, 588
MseI TTAA 4 cut(s) 80, 455, 474, 492
MslI CAYNNNNRTG 1 cut(s) 107
Msp20I TGGCCA 2 cut(s) 563, 588
MspA1I CMGCKG 1 cut(s) 419
MspR9I CCNGG 1 cut(s) 273
Mva1269I GAATGC 1 cut(s) 148
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 419, 428
NcoI CCATGG 1 cut(s) 215
NdeII GATC 3 cut(s) 118, 175, 300
NlaIII CATG 5 cut(s) 50, 92, 142, 219, 568
NmeAIII GCCGAG 1 cut(s) 400
NmuCI GTSAC 2 cut(s) 100, 317
OliI CACNNNNGTG 1 cut(s) 107
PagI TCATGA 1 cut(s) 138
PctI GAATGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 1 cut(s) 468
PkrI GCNGC 4 cut(s) 288, 415, 418, 421
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PshAI GACNNNNGTC 1 cut(s) 572
PshBI ATTAAT 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 271
PspFI CCCAGC 2 cut(s) 34, 235
PspGI CCWGG 1 cut(s) 271
PstI CTGCAG 1 cut(s) 424
PvuII CAGCTG 1 cut(s) 419
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 4 cut(s) 80, 455, 474, 492
SatI GCNGC 4 cut(s) 287, 414, 417, 420
Sau3AI GATC 3 cut(s) 118, 175, 300
SchI GAGTC 1 cut(s) 144
ScrFI CCNGG 1 cut(s) 273
SduI GDGCHC 1 cut(s) 364
SfaNI GCATC 1 cut(s) 258
SfcI CTRYAG 2 cut(s) 147, 420
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse9I AATT 6 cut(s) 51, 195, 436, 489, 526, 610
SsiI CCGC 1 cut(s) 413
SspMI CTAG 2 cut(s) 537, 570
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 2 cut(s) 75, 453
TasI AATT 6 cut(s) 51, 195, 436, 489, 526, 610
TauI GCSGC 1 cut(s) 416
TfiI GAWTC 1 cut(s) 468
Tru1I TTAA 4 cut(s) 80, 455, 474, 492
Tru9I TTAA 4 cut(s) 80, 455, 474, 492
TscAI CASTG 1 cut(s) 80
TseFI GTSAC 2 cut(s) 100, 317
TseI GCWGC 3 cut(s) 286, 416, 419
Tsp45I GTSAC 2 cut(s) 100, 317
TspDTI ATGAA 5 cut(s) 155, 171, 173, 337, 604
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 80
VspI ATTAAT 1 cut(s) 474
XapI RAATTY 3 cut(s) 436, 526, 610
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 2 cut(s) 537, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.