Rw2G048830

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000438
Physical Location & Seq
Forward (+)
76362339 .. 76364246
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G048830.1

Sequence Viewer

Length: 1308 bp
ATGAGCAAGCCACATATTATAGCTATTCCTTTCCCGGCACAAGGCCATGTAATGCCCTTAATGGAGTTCTCGCAGTGCTTAGCACGTCATGGCTTCAAAGTCACATTTGTGAACACAGAACATATTCACAAGCAAATTGTGAATGCAATATCCGATGAAAGTTATATAAGGCATGATCATGTTCATCTGGTTTCAATTCCAGATGGGTTAGAATCCCAAGAGGAAAGGAATGGGCCACGGCTGCTATCCGAAGCAATACAAGCAGTCATGCACCAGAATTTGGAGGATCTCATAGAGAAGATCAACAAAGAGGAAGGTGCAAAAATCACTTGTCTCATAGCTGATGAGAGTTGTGGGTGGGCTCTGGAAGTGGCACAAAAATTGAAGATTGCGAGGGTGGTTGCCTTTTGGCCTGCAGCAGCTGCAACTTTGGTATTGAACTTTTGTATCCCAAAATTAATTCATGAAGGAATCATTGATATGATGGTAAGAACTGTATTGAAAAGCCAGATGGTTCAGTTGGCACCAAAAATGCCCATGATTAAATCTACAAACTTTGTGTGGGCGTGTACAGGAAATTCAAACTGGCTTGTTTGCAACTCAACATACGAAATGGAGCCAACAGCATTCGCTTTGGAACCACAGATATTACCAATAGGCCCGCTTTTAGCTAGCAGCCGCCTTGGCAACTCAGCAGGCAGCTTGTGGCCAACAGACTCAACTTGCTTAAATTGGTTGGATAAAAAACCACCTTGCTCAGTGATCTATGTTGCATTTGGTAGCACAACAGTTTTCAATCAAACCCAATTCCAAGAACTGGCTTTAGCTCTTGAGTTGTCTAATAGGCCATTCCTCTGGGTTGTGAGACCAGATACCAGTGATAACATTCCCTACCCTGAAGGATATCATGACAGAGTAGGATCTAATGGACTAATGGTGAGCTGGGCCCCACAACAGAACGTTCTGGCCCATCCTTCAATTGCTTGCTTCCTAAGTCATTGTGGGTGGAACTCTACCATGGAAGGTGTCAGCAATGGGGTTCCTTTCTTGTGCTGGCCATACTTTGCTGACCAGTTCATCAATGAGAGCTACATTTGCGATGTTTGGGAGGTCGGATTGGGGTTTGATAAGAATGAAAGTGGGATCATTACTCAAGGAGAAATCAAGAACAAAATCGAGCACTTGCTTGGTGATAAAGACTTCAAAGCAAGGGCTTCCAAACTCAAGGAAATGGCCATGACAACTGTCAAAGAAGGAGGCCAATCTAACAAGATATTGAAGAATTTAATTGAATGGATCAAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

435

Amino Acids

48.56

Weight (kDa)

5.88

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 6 - 146 8.3e-08 Glycosyltransferase, N-terminal domain
UDPGT PF00201 254 - 409 1.6e-22 UDP-glucoronosyl and UDP-glucosyl transferase
EryCIII-like_C PF06722 312 - 413 1.6e-06 Erythromycin biosynthesis protein CIII-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 523
AccB7I CCANNNNNTGG 2 cut(s) 280, 817
AciI CCGC 2 cut(s) 662, 679
AclI AACGTT 1 cut(s) 960
AclWI GGATC 4 cut(s) 294, 928, 1151, 1304
AcoI YGGCCR 3 cut(s) 707, 1055, 1233
AcsI RAATTY 3 cut(s) 277, 577, 1282
AcuI CTGAAG 1 cut(s) 918
AfaI GTAC 1 cut(s) 571
AfiI CCNNNNNNNGG 3 cut(s) 41, 280, 817
AjiI CACGTC 1 cut(s) 86
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 8 cut(s) 23, 341, 422, 671, 702, 827, 942, 1089
AluI AGCT 8 cut(s) 23, 341, 422, 671, 702, 827, 942, 1089
Alw21I GWGCWC 1 cut(s) 1182
Alw26I GTCTC 2 cut(s) 338, 859
AlwI GGATC 4 cut(s) 294, 928, 1151, 1304
AlwNI CAGNNNCTG 1 cut(s) 422
ApaI GGGCCC 1 cut(s) 949
ApeKI GCWGC 6 cut(s) 241, 416, 419, 422, 675, 699
ApoI RAATTY 3 cut(s) 277, 577, 1282
AseI ATTAAT 1 cut(s) 458
Asp700I GAANNNNTTC 1 cut(s) 123
AspS9I GGNCC 5 cut(s) 233, 659, 945, 946, 967
AsuC2I CCSGG 1 cut(s) 35
AsuHPI GGTGA 2 cut(s) 949, 1202
AsuNHI GCTAGC 1 cut(s) 671
BaeGI GKGCMC 1 cut(s) 949
BaeI ACNNNNGTAYC 2 cut(s) 430, 463
BalI TGGCCA 3 cut(s) 709, 1057, 1235
BanI GGYRCC 1 cut(s) 523
BanII GRGCYC 2 cut(s) 364, 949
Bbv12I GWGCWC 1 cut(s) 1182
BbvI GCAGC 6 cut(s) 228, 409, 428, 431, 687, 711
BccI CCATC 4 cut(s) 197, 478, 505, 978
BceAI ACGGC 1 cut(s) 254
BciVI GTATCC 1 cut(s) 458
BclI TGATCA 1 cut(s) 175
BcnI CCSGG 1 cut(s) 35
BcoDI GTCTC 2 cut(s) 338, 859
BfaI CTAG 1 cut(s) 672
BfmI CTRYAG 1 cut(s) 414
BfuI GTATCC 1 cut(s) 458
BglI GCCNNNNNGGC 1 cut(s) 684
BisI GCNGC 7 cut(s) 242, 417, 420, 423, 676, 679, 700
BlpI GCTNAGC 1 cut(s) 79
BlsI GCNGC 7 cut(s) 243, 418, 421, 424, 677, 680, 701
Bme1390I CCNGG 1 cut(s) 35
BmgBI CACGTC 1 cut(s) 86
BmgT120I GGNCC 5 cut(s) 233, 659, 945, 946, 967
BmiI GGNNCC 6 cut(s) 525, 618, 639, 947, 948, 1041
BmrFI CCNGG 1 cut(s) 35
BmtI GCTAGC 1 cut(s) 675
BoxI GACNNNNGTC 1 cut(s) 1244
Bpu1102I GCTNAGC 1 cut(s) 79
BpuEI CTTGAG 3 cut(s) 851, 1137, 1208
BpuMI CCSGG 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 859
BsaJI CCNNGG 3 cut(s) 236, 682, 1017
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 280, 817
Bse1I ACTGG 4 cut(s) 590, 822, 876, 1072
Bse3DI GCAATG 1 cut(s) 1039
BseDI CCNNGG 3 cut(s) 236, 682, 1017
BseGI GGATG 1 cut(s) 970
BseLI CCNNNNNNNGG 3 cut(s) 41, 280, 817
BseMI GCAATG 1 cut(s) 1039
BseMII CTCAG 2 cut(s) 705, 771
BseNI ACTGG 4 cut(s) 590, 822, 876, 1072
BseSI GKGCMC 1 cut(s) 949
BseXI GCAGC 6 cut(s) 228, 409, 428, 431, 687, 711
BseYI CCCAGC 1 cut(s) 942
BshNI GGYRCC 1 cut(s) 523
BsiHKAI GWGCWC 1 cut(s) 1182
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 3 cut(s) 41, 280, 817
BsmAI GTCTC 2 cut(s) 338, 859
BsmI GAATGC 2 cut(s) 148, 626
Bso31I GGTCTC 1 cut(s) 859
Bsp120I GGGCCC 1 cut(s) 945
Bsp1286I GDGCHC 3 cut(s) 364, 949, 1182
Bsp1407I TGTACA 1 cut(s) 569
Bsp143I GATC 7 cut(s) 175, 286, 300, 762, 920, 1143, 1296
Bsp1720I GCTNAGC 1 cut(s) 79
Bsp19I CCATGG 1 cut(s) 1017
BspACI CCGC 2 cut(s) 662, 679
BspCNI CTCAG 2 cut(s) 704, 770
BspHI TCATGA 2 cut(s) 463, 907
BspLI GGNNCC 6 cut(s) 525, 618, 639, 947, 948, 1041
BspMAI CTGCAG 1 cut(s) 418
BspOI GCTAGC 1 cut(s) 675
BspPI GGATC 4 cut(s) 294, 928, 1151, 1304
BspT107I GGYRCC 1 cut(s) 523
BspTNI GGTCTC 1 cut(s) 859
BsrDI GCAATG 1 cut(s) 1039
BsrGI TGTACA 1 cut(s) 569
BsrI ACTGG 4 cut(s) 590, 822, 876, 1072
BssECI CCNNGG 3 cut(s) 236, 682, 1017
BssMI GATC 7 cut(s) 175, 286, 300, 762, 920, 1143, 1296
BssT1I CCWWGG 2 cut(s) 682, 1017
Bst4CI ACNGT 3 cut(s) 496, 790, 1246
BstAPI GCANNNNNTGC 1 cut(s) 422
BstAUI TGTACA 1 cut(s) 569
BstC8I GCNNGC 7 cut(s) 8, 414, 662, 673, 697, 985, 1055
BstDEI CTNAG 4 cut(s) 79, 691, 757, 992
BstDSI CCRYGG 2 cut(s) 236, 1017
BstF5I GGATG 1 cut(s) 970
BstKTI GATC 7 cut(s) 178, 289, 303, 765, 923, 1146, 1299
BstMAI GTCTC 2 cut(s) 338, 859
BstMBI GATC 7 cut(s) 175, 286, 300, 762, 920, 1143, 1296
BstMWI GCNNNNNNNGC 5 cut(s) 241, 260, 422, 684, 1095
BstPAI GACNNNNGTC 1 cut(s) 1244
BstSCI CCNGG 1 cut(s) 33
BstSFI CTRYAG 1 cut(s) 414
BstSLI GKGCMC 1 cut(s) 949
BstV1I GCAGC 6 cut(s) 228, 409, 428, 431, 687, 711
BstX2I RGATCY 2 cut(s) 286, 920
BstXI CCANNNNNNTGG 1 cut(s) 855
BstYI RGATCY 2 cut(s) 286, 920
BsuI GTATCC 1 cut(s) 458
BtgI CCRYGG 2 cut(s) 236, 1017
BtgZI GCGATG 1 cut(s) 1113
BtrI CACGTC 1 cut(s) 86
BtsCI GGATG 1 cut(s) 970
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 3 cut(s) 80, 765, 883
Cac8I GCNNGC 7 cut(s) 8, 414, 662, 673, 697, 985, 1055
CaiI CAGNNNCTG 1 cut(s) 422
CciI TCATGA 2 cut(s) 463, 907
Cfr13I GGNCC 5 cut(s) 233, 659, 945, 946, 967
Csp6I GTAC 1 cut(s) 570
CviQI GTAC 1 cut(s) 570
DdeI CTNAG 4 cut(s) 79, 691, 757, 992
DpnI GATC 7 cut(s) 177, 288, 302, 764, 922, 1145, 1298
DpnII GATC 7 cut(s) 175, 286, 300, 762, 920, 1143, 1296
EaeI YGGCCR 3 cut(s) 707, 1055, 1233
Eco130I CCWWGG 2 cut(s) 682, 1017
Eco24I GRGCYC 2 cut(s) 364, 949
Eco31I GGTCTC 1 cut(s) 859
Eco32I GATATC 1 cut(s) 905
Eco57I CTGAAG 1 cut(s) 918
EcoO109I RGGNCCY 1 cut(s) 946
EcoRV GATATC 1 cut(s) 905
EcoT14I CCWWGG 2 cut(s) 682, 1017
EcoT38I GRGCYC 2 cut(s) 364, 949
ErhI CCWWGG 2 cut(s) 682, 1017
FauI CCCGC 1 cut(s) 669
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 7 cut(s) 242, 417, 420, 423, 676, 679, 700
FokI GGATG 1 cut(s) 957
FriOI GRGCYC 2 cut(s) 364, 949
Fsp4HI GCNGC 7 cut(s) 242, 417, 420, 423, 676, 679, 700
FspBI CTAG 1 cut(s) 672
GluI GCNGC 7 cut(s) 242, 417, 420, 423, 676, 679, 700
GsaI CCCAGC 1 cut(s) 946
HapII CCGG 1 cut(s) 35
HinfI GANTC 3 cut(s) 212, 471, 716
HpaII CCGG 1 cut(s) 35
HphI GGTGA 2 cut(s) 949, 1202
Hpy166II GTNNAC 2 cut(s) 112, 570
Hpy188I TCNGA 3 cut(s) 154, 250, 1115
Hpy188III TCNNGA 6 cut(s) 200, 365, 464, 830, 908, 1165
Hpy8I GTNNAC 2 cut(s) 112, 570
HpyAV CCTTC 6 cut(s) 308, 461, 893, 984, 1016, 1247
HpyCH4III ACNGT 3 cut(s) 496, 790, 1246
HpyCH4IV ACGT 2 cut(s) 85, 960
HpyCH4V TGCA 7 cut(s) 146, 271, 320, 416, 425, 597, 773
HpyF10VI GCNNNNNNNGC 5 cut(s) 241, 260, 422, 684, 1095
HpyF3I CTNAG 4 cut(s) 79, 691, 757, 992
HpySE526I ACGT 2 cut(s) 85, 960
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 7 cut(s) 175, 286, 300, 762, 920, 1143, 1296
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 6 cut(s) 228, 409, 428, 431, 687, 711
MaeI CTAG 1 cut(s) 672
MaeII ACGT 2 cut(s) 85, 960
MaeIII GTNAC 1 cut(s) 100
MalI GATC 7 cut(s) 177, 288, 302, 764, 922, 1145, 1298
MboI GATC 7 cut(s) 175, 286, 300, 762, 920, 1143, 1296
MboII GAAGA 3 cut(s) 310, 397, 1291
MfeI CAATTG 1 cut(s) 978
MflI RGATCY 2 cut(s) 286, 920
MhlI GDGCHC 3 cut(s) 364, 949, 1182
MlsI TGGCCA 3 cut(s) 709, 1057, 1235
MluNI TGGCCA 3 cut(s) 709, 1057, 1235
MlyI GAGTC 1 cut(s) 710
MmeI TCCRAC 2 cut(s) 717, 1093
MnlI CCTC 7 cut(s) 214, 277, 304, 387, 863, 1102, 1250
Mox20I TGGCCA 3 cut(s) 709, 1057, 1235
MroXI GAANNNNTTC 1 cut(s) 123
MscI TGGCCA 3 cut(s) 709, 1057, 1235
MseI TTAA 5 cut(s) 59, 458, 543, 728, 1286
MslI CAYNNNNRTG 3 cut(s) 107, 177, 479
Msp20I TGGCCA 3 cut(s) 709, 1057, 1235
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 35
MunI CAATTG 1 cut(s) 978
Mva1269I GAATGC 2 cut(s) 148, 626
MwoI GCNNNNNNNGC 5 cut(s) 241, 260, 422, 684, 1095
NciI CCSGG 1 cut(s) 35
NcoI CCATGG 1 cut(s) 1017
NdeII GATC 7 cut(s) 175, 286, 300, 762, 920, 1143, 1296
NheI GCTAGC 1 cut(s) 671
NlaIV GGNNCC 6 cut(s) 525, 618, 639, 947, 948, 1041
NmuCI GTSAC 1 cut(s) 100
OliI CACNNNNGTG 1 cut(s) 107
PagI TCATGA 2 cut(s) 463, 907
PctI GAATGC 2 cut(s) 148, 626
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 2 cut(s) 212, 471
PflMI CCANNNNNTGG 2 cut(s) 280, 817
PkrI GCNGC 7 cut(s) 243, 418, 421, 424, 677, 680, 701
PleI GAGTC 1 cut(s) 710
PpsI GAGTC 1 cut(s) 710
PshAI GACNNNNGTC 1 cut(s) 1244
PshBI ATTAAT 1 cut(s) 458
Psp1406I AACGTT 1 cut(s) 960
PspFI CCCAGC 1 cut(s) 942
PspN4I GGNNCC 6 cut(s) 525, 618, 639, 947, 948, 1041
PspOMI GGGCCC 1 cut(s) 945
PspPI GGNCC 5 cut(s) 233, 659, 945, 946, 967
PstI CTGCAG 1 cut(s) 418
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 2 cut(s) 286, 920
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 1 cut(s) 571
RsaNI GTAC 1 cut(s) 570
RseI CAYNNNNRTG 3 cut(s) 107, 177, 479
SaqAI TTAA 5 cut(s) 59, 458, 543, 728, 1286
SatI GCNGC 7 cut(s) 242, 417, 420, 423, 676, 679, 700
Sau3AI GATC 7 cut(s) 175, 286, 300, 762, 920, 1143, 1296
Sau96I GGNCC 5 cut(s) 233, 659, 945, 946, 967
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 3 cut(s) 364, 949, 1182
SfcI CTRYAG 1 cut(s) 414
SmiMI CAYNNNNRTG 3 cut(s) 107, 177, 479
SmlI CTYRAG 3 cut(s) 830, 1152, 1223
SmoI CTYRAG 3 cut(s) 830, 1152, 1223
SsiI CCGC 2 cut(s) 662, 679
SspMI CTAG 1 cut(s) 672
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 2 cut(s) 682, 1017
TaaI ACNGT 3 cut(s) 496, 790, 1246
TaiI ACGT 2 cut(s) 88, 963
TaqI TCGA 1 cut(s) 1176
TatI WGTACW 1 cut(s) 569
TauI GCSGC 1 cut(s) 681
TfiI GAWTC 2 cut(s) 212, 471
Tru1I TTAA 5 cut(s) 59, 458, 543, 728, 1286
Tru9I TTAA 5 cut(s) 59, 458, 543, 728, 1286
TscAI CASTG 3 cut(s) 80, 765, 883
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 6 cut(s) 241, 416, 419, 422, 675, 699
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 6 cut(s) 171, 173, 452, 480, 1066, 1149
TspRI CASTG 3 cut(s) 80, 765, 883
Van91I CCANNNNNTGG 2 cut(s) 280, 817
VspI ATTAAT 1 cut(s) 458
XapI RAATTY 3 cut(s) 277, 577, 1282
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.