RchiOBHm_Chr2g0166061

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000438
Physical Location & Seq
Forward (+)
80854379 .. 80854579
201 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53398

Sequence Viewer

Length: 201 bp
ATGGTGGGATGGGCCCCACAACAGAAGGTTCTGGTCCATCCTTCAATTGCTTGCTTCCTAAGCCACTGTGGTCGGAACTCTATCTTGGAAGGTCTAAGCAATGGGGTTTCTTTCCTGTGTTGGCCATATTTTGTTGATCAGTTCCTTAATAAGAGCTACGTCTGTGATATTTTGCTGATCAGTTCCTTAATTCGTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

66

Amino Acids

7.43

Weight (kDa)

7.69

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 2 - 53 3.8e-14 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 122
AgsI TTSAA 1 cut(s) 45
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
AoxI GGCC 2 cut(s) 12, 122
ApaI GGGCCC 1 cut(s) 16
AspS9I GGNCC 3 cut(s) 12, 13, 34
AvaII GGWCC 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 16
BalI TGGCCA 1 cut(s) 124
BanII GRGCYC 1 cut(s) 16
BccI CCATC 2 cut(s) 3, 45
BclI TGATCA 2 cut(s) 136, 177
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 3 cut(s) 12, 13, 34
BmiI GGNNCC 2 cut(s) 14, 15
Bpu10I CCTNAGC 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 106
BseGI GGATG 2 cut(s) 14, 37
BseMI GCAATG 1 cut(s) 106
BseSI GKGCMC 1 cut(s) 16
BshFI GGCC 2 cut(s) 14, 124
BsnI GGCC 2 cut(s) 14, 124
Bsp120I GGGCCC 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 2 cut(s) 136, 177
BspANI GGCC 2 cut(s) 14, 124
BspLI GGNNCC 2 cut(s) 14, 15
BsrDI GCAATG 1 cut(s) 106
BssMI GATC 2 cut(s) 136, 177
Bst4CI ACNGT 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 2 cut(s) 59, 95
BstF5I GGATG 2 cut(s) 14, 37
BstKTI GATC 2 cut(s) 139, 180
BstMBI GATC 2 cut(s) 136, 177
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstSLI GKGCMC 1 cut(s) 16
BsuRI GGCC 2 cut(s) 14, 124
BtsCI GGATG 2 cut(s) 14, 37
BtsIMutI CAGTG 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 52
Cfr13I GGNCC 3 cut(s) 12, 13, 34
CviJI RGCY 4 cut(s) 14, 63, 124, 156
CviKI_1 RGCY 4 cut(s) 14, 63, 124, 156
DdeI CTNAG 2 cut(s) 59, 95
DpnI GATC 2 cut(s) 138, 179
DpnII GATC 2 cut(s) 136, 177
EaeI YGGCCR 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 16
FaiI YATR 1 cut(s) 127
FbaI TGATCA 2 cut(s) 136, 177
FokI GGATG 2 cut(s) 21, 24
FriOI GRGCYC 1 cut(s) 16
HaeIII GGCC 2 cut(s) 14, 124
Hpy188I TCNGA 1 cut(s) 75
HpyAV CCTTC 3 cut(s) 19, 51, 83
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpyF3I CTNAG 2 cut(s) 59, 95
HpySE526I ACGT 1 cut(s) 159
Ksp22I TGATCA 2 cut(s) 136, 177
Kzo9I GATC 2 cut(s) 136, 177
LpnPI CCDG 2 cut(s) 17, 128
MaeII ACGT 1 cut(s) 159
MalI GATC 2 cut(s) 138, 179
MboI GATC 2 cut(s) 136, 177
MfeI CAATTG 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 16
MlsI TGGCCA 1 cut(s) 124
MluCI AATT 2 cut(s) 45, 189
MluNI TGGCCA 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 53
Mox20I TGGCCA 1 cut(s) 124
MscI TGGCCA 1 cut(s) 124
MseI TTAA 2 cut(s) 147, 188
Msp20I TGGCCA 1 cut(s) 124
MunI CAATTG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 60
NdeII GATC 2 cut(s) 136, 177
NlaIV GGNNCC 2 cut(s) 14, 15
PspN4I GGNNCC 2 cut(s) 14, 15
PspOMI GGGCCC 1 cut(s) 12
PspPI GGNCC 3 cut(s) 12, 13, 34
SaqAI TTAA 2 cut(s) 147, 188
Sau3AI GATC 2 cut(s) 136, 177
Sau96I GGNCC 3 cut(s) 12, 13, 34
SduI GDGCHC 1 cut(s) 16
SetI ASST 4 cut(s) 30, 94, 158, 162
SgeI CNNG 4 cut(s) 44, 63, 97, 127
SinI GGWCC 1 cut(s) 34
Sse9I AATT 2 cut(s) 45, 189
TaaI ACNGT 1 cut(s) 68
TaiI ACGT 1 cut(s) 162
TasI AATT 2 cut(s) 45, 189
Tru1I TTAA 2 cut(s) 147, 188
Tru9I TTAA 2 cut(s) 147, 188
TscAI CASTG 1 cut(s) 71
TspRI CASTG 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.