Rh2AG585800

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000438
Physical Location & Seq
Forward (+)
81834047 .. 81834415
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG585800.1

Sequence Viewer

Length: 369 bp
ATGAATGCTCAGGCTGATGAAAGTCATATAAGGAATGATCATATCAATCAGGTCCCAATTTCAGATGGGTTAGAACACTGGGAGGACAGAAATGATCTAGGGAAGTTATCTGAAGCAATACAAAGAGTCATGCCTGTGGAGTTGGAGGAGCTCATACAGAAGATCAACCAAGGGGAAGGTGATAAAGTCACTTGTGTCATTGCTGATGAGAGTTGCGGATGGGCTCTGGAAGTGGCACGAAAAATGAAGATCAGGCGAGTAGTTGCATTTTGGCCTGCATCAGCTGCAGCTTTGGAGGTGATACTGTGTATTCCCAAGTTTATTCAGGAAGGAATTATTCACAAAGATGGTCAGTCATTCTATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

122

Amino Acids

13.8

Weight (kDa)

5.14

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 216
AcuI CTGAAG 1 cut(s) 132
AluBI AGCT 3 cut(s) 151, 284, 290
AluI AGCT 3 cut(s) 151, 284, 290
Alw21I GWGCWC 1 cut(s) 153
AoxI GGCC 1 cut(s) 272
ApeKI GCWGC 2 cut(s) 284, 287
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 2 cut(s) 191, 310
AvaII GGWCC 1 cut(s) 52
BanII GRGCYC 2 cut(s) 153, 226
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 271, 299
BccI CCATC 3 cut(s) 59, 213, 341
BclI TGATCA 1 cut(s) 37
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 285
BisI GCNGC 2 cut(s) 285, 288
BlsI GCNGC 2 cut(s) 286, 289
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 54
BmrI ACTGGG 1 cut(s) 88
BmsI GCATC 1 cut(s) 287
BmuI ACTGGG 1 cut(s) 88
Bpu10I CCTNAGC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 2 cut(s) 271, 299
BshFI GGCC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 153
BslFI GGGAC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 274
Bsp1286I GDGCHC 2 cut(s) 153, 226
Bsp143I GATC 4 cut(s) 37, 94, 162, 249
BspACI CCGC 1 cut(s) 216
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 54
BspMAI CTGCAG 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 4 cut(s) 37, 94, 162, 249
BssT1I CCWWGG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 306
BstAPI GCANNNNNTGC 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 224
BstKTI GATC 4 cut(s) 40, 97, 165, 252
BstMBI GATC 4 cut(s) 37, 94, 162, 249
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 285
BstV1I GCAGC 2 cut(s) 271, 299
BsuRI GGCC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 52
CviAII CATG 1 cut(s) 130
CviJI RGCY 6 cut(s) 14, 151, 224, 274, 284, 290
CviKI_1 RGCY 6 cut(s) 14, 151, 224, 274, 284, 290
DdeI CTNAG 1 cut(s) 9
DpnI GATC 4 cut(s) 39, 96, 164, 251
DpnII GATC 4 cut(s) 37, 94, 162, 249
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 169
Eco24I GRGCYC 2 cut(s) 153, 226
Eco47I GGWCC 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 169
EcoT38I GRGCYC 2 cut(s) 153, 226
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 1 cut(s) 133
FaiI YATR 5 cut(s) 27, 29, 42, 131, 155
FaqI GGGAC 1 cut(s) 38
FatI CATG 1 cut(s) 129
FbaI TGATCA 1 cut(s) 37
Fnu4HI GCNGC 2 cut(s) 285, 288
FokI GGATG 1 cut(s) 231
FriOI GRGCYC 2 cut(s) 153, 226
Fsp4HI GCNGC 2 cut(s) 285, 288
FspBI CTAG 1 cut(s) 98
GluI GCNGC 2 cut(s) 285, 288
HaeIII GGCC 1 cut(s) 274
Hin1II CATG 1 cut(s) 133
HinfI GANTC 1 cut(s) 126
HphI GGTGA 2 cut(s) 191, 310
Hpy188I TCNGA 2 cut(s) 64, 112
Hpy188III TCNNGA 2 cut(s) 227, 326
HpyAV CCTTC 2 cut(s) 170, 323
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4V TGCA 3 cut(s) 266, 278, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 1 cut(s) 133
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 4 cut(s) 37, 94, 162, 249
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 7 cut(s) 35, 64, 147, 212, 238, 288, 311
Lsp1109I GCAGC 2 cut(s) 271, 299
LweI GCATC 1 cut(s) 287
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 187
MalI GATC 4 cut(s) 39, 96, 164, 251
MboI GATC 4 cut(s) 37, 94, 162, 249
MboII GAAGA 2 cut(s) 172, 259
MhlI GDGCHC 2 cut(s) 153, 226
MluCI AATT 2 cut(s) 57, 333
MlyI GAGTC 1 cut(s) 135
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 3 cut(s) 76, 139, 289
MslI CAYNNNNRTG 2 cut(s) 134, 345
MspA1I CMGCKG 1 cut(s) 284
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 284
NdeII GATC 4 cut(s) 37, 94, 162, 249
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 187
PctI GAATGC 1 cut(s) 10
PkrI GCNGC 2 cut(s) 286, 289
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PpuMI RGGWCCY 1 cut(s) 52
Psp124BI GAGCTC 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
PstI CTGCAG 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 284
RseI CAYNNNNRTG 2 cut(s) 134, 345
SacI GAGCTC 1 cut(s) 153
SatI GCNGC 2 cut(s) 285, 288
Sau3AI GATC 4 cut(s) 37, 94, 162, 249
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 135
SduI GDGCHC 2 cut(s) 153, 226
SetI ASST 6 cut(s) 54, 153, 181, 286, 292, 300
SfaNI GCATC 1 cut(s) 287
SfcI CTRYAG 1 cut(s) 285
SinI GGWCC 1 cut(s) 52
SmiMI CAYNNNNRTG 2 cut(s) 134, 345
Sse9I AATT 2 cut(s) 57, 333
SsiI CCGC 1 cut(s) 216
SspMI CTAG 1 cut(s) 98
SstI GAGCTC 1 cut(s) 153
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 306
TasI AATT 2 cut(s) 57, 333
TscAI CASTG 1 cut(s) 83
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 2 cut(s) 284, 287
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 3 cut(s) 17, 33, 260
TspRI CASTG 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 52
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.