RchiOBHm_Chr2g0166021

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000438
Physical Location & Seq
Forward (+)
80841963 .. 80842151
189 bp
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UTR
Exon/CDS
Intron
PRQ53394

Sequence Viewer

Length: 189 bp
ATGAGCAAGCCACATATCCTAGCTTTTGCATATCCGGCACAAGGCCATGTATTGCCCTTGATGGAGTTCTCACAATCCTTGGCAAAACATGGCTTCAGAGTCACATTTGTGCACACAGAATATAATCACAAGCGAGTCATTAATTCCACGGTTAATGAAAGTCACATAGTGGATGATCATATTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

62

Amino Acids

7.13

Weight (kDa)

7.06

Isoelectric Point (pI)

67.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 79
AdeI CACNNNGTG 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 1 cut(s) 185
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw21I GWGCWC 1 cut(s) 114
Alw44I GTGCAC 1 cut(s) 110
AoxI GGCC 1 cut(s) 43
ApaLI GTGCAC 1 cut(s) 110
AseI ATTAAT 1 cut(s) 141
BaeGI GKGCMC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 114
BccI CCATC 1 cut(s) 55
BclI TGATCA 1 cut(s) 175
BfaI CTAG 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 78, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 78, 147
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 41
BseSI GKGCMC 1 cut(s) 114
BshFI GGCC 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 41
BsnI GGCC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 175
BspANI GGCC 1 cut(s) 45
BssECI CCNNGG 2 cut(s) 78, 147
BssMI GATC 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 8
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstSLI GKGCMC 1 cut(s) 114
BsuRI GGCC 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 8
CviAII CATG 2 cut(s) 47, 89
CviJI RGCY 4 cut(s) 10, 23, 45, 93
CviKI_1 RGCY 4 cut(s) 10, 23, 45, 93
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
DraIII CACNNNGTG 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 2 cut(s) 50, 92
FaiI YATR 7 cut(s) 15, 31, 48, 90, 123, 167, 180
FatI CATG 2 cut(s) 46, 88
FbaI TGATCA 1 cut(s) 175
FokI GGATG 1 cut(s) 185
FspBI CTAG 1 cut(s) 20
HaeIII GGCC 1 cut(s) 45
HapII CCGG 1 cut(s) 35
Hin1II CATG 2 cut(s) 50, 92
HinfI GANTC 2 cut(s) 99, 135
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 112
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 29, 112
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
Hsp92II CATG 2 cut(s) 50, 92
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 1 cut(s) 48
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 2 cut(s) 100, 161
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 1 cut(s) 142
MlyI GAGTC 2 cut(s) 108, 144
MseI TTAA 2 cut(s) 141, 153
MslI CAYNNNNRTG 1 cut(s) 107
MspI CCGG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 1 cut(s) 175
NlaIII CATG 2 cut(s) 50, 92
NmuCI GTSAC 2 cut(s) 100, 161
OliI CACNNNNGTG 1 cut(s) 107
PleI GAGTC 2 cut(s) 107, 143
PpsI GAGTC 2 cut(s) 107, 143
PshBI ATTAAT 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 2 cut(s) 141, 153
Sau3AI GATC 1 cut(s) 175
SchI GAGTC 2 cut(s) 108, 144
SduI GDGCHC 1 cut(s) 114
SetI ASST 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 1 cut(s) 142
SspMI CTAG 1 cut(s) 20
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 151
TasI AATT 1 cut(s) 142
Tru1I TTAA 2 cut(s) 141, 153
Tru9I TTAA 2 cut(s) 141, 153
TseFI GTSAC 2 cut(s) 100, 161
Tsp45I GTSAC 2 cut(s) 100, 161
TspDTI ATGAA 1 cut(s) 171
VneI GTGCAC 1 cut(s) 110
VspI ATTAAT 1 cut(s) 141
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.