Rh2BG588800

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000438
Physical Location & Seq
Reverse (-)
80531473 .. 80533761
2289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG588800.1

Sequence Viewer

Length: 843 bp
ATGAGCAAGCCACATATTATAGCCATTCCTTACCCAGCTCAAGGCCATGTAATTCCCTTGATGGAGTTATCACAATGCTTAGTGAATGAAGGCATCAAAGTCACATTTGTGAACACAGATTTTAACCACAAACGAGTCATGAATTCCTTGGTTGTTGAAACTCATGAAAGGGATGATCAGGTTCGTCTGGTTTCAATTCCGGATGGGTTAGAACCAGGGGAGGACAGAAATGAGCTAGGGCAGCTATGTGAAGCAATACTTAGAGTCATGCCTGGGAAGTTAGAGGAGCTCATAGAGAAGATCAAGGAAGAAGAAGGTGATAAAGTTGCTTGTATCATTGCTGATGAGAATAACGGATGGGCTCTGGAAGTAGCAGAGAAAATGCAAATAAAGAAAATTGCCTTCTGGTCTGCGTCAGCTGCACTTTTAGCACTGGAGTTTTGTATCCCAAAATTAATTCAAGAAGGAATCATTGATGATGATGGATCTGCATTAAAAAGACAGATGATCAACTTAGCACCAAACATGCCCACCATGAAAACTGAAGACTTAGCGTGGTTAACCATTGGTGACAAAACCACTCAGAAAATTATATTCCAATTCATTCTAAGTAACAACAAGACTGTGAAATTGGCTGACTGGGTTGTGGGATTGAAGTTTGATAAGAATGAGAGTGGGATCATTCCTAAAGGAGAAATTAACAACAAGGTGGAACAACTTCTTGGGGACAAAAATTTCAGAGCCAGGGCTTCAAAATTCAAGGAAATGGCCATGACTAGCGTCAAAGAAGGCGGCCAGTCTAACAAAATATTTAAGAATTTCATTGAATGGATGAAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

280

Amino Acids

31.51

Weight (kDa)

5.59

Isoelectric Point (pI)

31.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 1 cut(s) 792
AclWI GGATC 2 cut(s) 493, 686
AcoI YGGCCR 2 cut(s) 768, 793
AcsI RAATTY 4 cut(s) 142, 733, 755, 817
AcuI CTGAAG 1 cut(s) 564
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 7 cut(s) 158, 195, 461, 655, 753, 760, 827
AjnI CCWGG 3 cut(s) 214, 271, 743
AjuI GAANNNNNNNTTGG 2 cut(s) 705, 737
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 5 cut(s) 38, 235, 244, 289, 419
AluI AGCT 5 cut(s) 38, 235, 244, 289, 419
Alw21I GWGCWC 1 cut(s) 291
AlwI GGATC 2 cut(s) 493, 686
Aor13HI TCCGGA 1 cut(s) 199
AoxI GGCC 3 cut(s) 43, 768, 793
ApeKI GCWGC 2 cut(s) 241, 419
ApoI RAATTY 4 cut(s) 142, 733, 755, 817
AseI ATTAAT 1 cut(s) 455
Asp700I GAANNNNTTC 1 cut(s) 717
AsuHPI GGTGA 2 cut(s) 329, 581
BalI TGGCCA 1 cut(s) 770
BanII GRGCYC 2 cut(s) 291, 364
BbsI GAAGAC 1 cut(s) 552
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 253, 406
BccI CCATC 4 cut(s) 55, 197, 351, 476
BciT130I CCWGG 3 cut(s) 216, 273, 745
BciVI GTATCC 1 cut(s) 455
BclI TGATCA 2 cut(s) 175, 507
BfaI CTAG 2 cut(s) 236, 777
BfuI GTATCC 1 cut(s) 455
BisI GCNGC 3 cut(s) 242, 420, 793
BlsI GCNGC 3 cut(s) 243, 421, 794
Bme1390I CCNGG 3 cut(s) 216, 273, 745
BmrFI CCNGG 3 cut(s) 216, 273, 745
BmrI ACTGGG 1 cut(s) 649
BmsI GCATC 1 cut(s) 102
BmuI ACTGGG 1 cut(s) 649
BoxI GACNNNNGTC 1 cut(s) 779
BpiI GAAGAC 1 cut(s) 552
BpmI CTGGAG 1 cut(s) 455
BpuEI CTTGAG 1 cut(s) 24
BsaJI CCNNGG 4 cut(s) 147, 215, 272, 744
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse1I ACTGG 3 cut(s) 438, 644, 796
Bse3DI GCAATG 1 cut(s) 336
BseAI TCCGGA 1 cut(s) 199
BseBI CCWGG 3 cut(s) 216, 273, 745
BseDI CCNNGG 4 cut(s) 147, 215, 272, 744
BseGI GGATG 4 cut(s) 178, 208, 362, 837
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 596
BseNI ACTGG 3 cut(s) 438, 644, 796
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 2 cut(s) 253, 406
BseYI CCCAGC 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 405
BshFI GGCC 3 cut(s) 45, 770, 795
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 740
BslI CCNNNNNNNGG 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 740
BsnI GGCC 3 cut(s) 45, 770, 795
Bsp1286I GDGCHC 2 cut(s) 291, 364
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 5 cut(s) 175, 300, 485, 507, 678
BspACI CCGC 1 cut(s) 792
BspANI GGCC 3 cut(s) 45, 770, 795
BspCNI CTCAG 1 cut(s) 595
BspEI TCCGGA 1 cut(s) 199
BspHI TCATGA 2 cut(s) 138, 163
BspPI GGATC 2 cut(s) 493, 686
BsrDI GCAATG 1 cut(s) 336
BsrI ACTGG 3 cut(s) 438, 644, 796
BssECI CCNNGG 4 cut(s) 147, 215, 272, 744
BssMI GATC 5 cut(s) 175, 300, 485, 507, 678
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 3 cut(s) 216, 273, 745
Bst4CI ACNGT 1 cut(s) 625
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 6 cut(s) 79, 260, 514, 550, 582, 608
BstF5I GGATG 4 cut(s) 178, 208, 362, 837
BstKTI GATC 5 cut(s) 178, 303, 488, 510, 681
BstMBI GATC 5 cut(s) 175, 300, 485, 507, 678
BstMWI GCNNNNNNNGC 3 cut(s) 241, 419, 428
BstNI CCWGG 3 cut(s) 216, 273, 745
BstNSI RCATGY 1 cut(s) 529
BstPAI GACNNNNGTC 1 cut(s) 779
BstSCI CCNGG 3 cut(s) 214, 271, 743
BstV1I GCAGC 2 cut(s) 253, 406
BstV2I GAAGAC 1 cut(s) 552
BstX2I RGATCY 1 cut(s) 485
BstYI RGATCY 1 cut(s) 485
BsuI GTATCC 1 cut(s) 455
BsuRI GGCC 3 cut(s) 45, 770, 795
BtsCI GGATG 4 cut(s) 178, 208, 362, 837
BtsIMutI CAGTG 1 cut(s) 431
Cac8I GCNNGC 1 cut(s) 8
CciI TCATGA 2 cut(s) 138, 163
CseI GACGC 2 cut(s) 402, 769
CviAII CATG 7 cut(s) 47, 139, 164, 268, 526, 535, 772
DdeI CTNAG 6 cut(s) 79, 260, 514, 550, 582, 608
DpnI GATC 5 cut(s) 177, 302, 487, 509, 680
DpnII GATC 5 cut(s) 175, 300, 485, 507, 678
EaeI YGGCCR 2 cut(s) 768, 793
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 2 cut(s) 291, 364
Eco53kI GAGCTC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 564
EcoICRI GAGCTC 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 142
EcoRII CCWGG 3 cut(s) 214, 271, 743
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 2 cut(s) 291, 364
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 7 cut(s) 50, 142, 167, 271, 529, 538, 775
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FaqI GGGAC 1 cut(s) 740
FatI CATG 7 cut(s) 46, 138, 163, 267, 525, 534, 771
FbaI TGATCA 2 cut(s) 175, 507
Fnu4HI GCNGC 3 cut(s) 242, 420, 793
FokI GGATG 3 cut(s) 185, 215, 369
FriOI GRGCYC 2 cut(s) 291, 364
Fsp4HI GCNGC 3 cut(s) 242, 420, 793
FspBI CTAG 2 cut(s) 236, 777
GluI GCNGC 3 cut(s) 242, 420, 793
GsaI CCCAGC 1 cut(s) 38
GsuI CTGGAG 1 cut(s) 455
HaeIII GGCC 3 cut(s) 45, 770, 795
HapII CCGG 1 cut(s) 200
HgaI GACGC 2 cut(s) 402, 769
Hin1II CATG 7 cut(s) 50, 142, 167, 271, 529, 538, 775
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HinfI GANTC 3 cut(s) 135, 264, 468
HpaI GTTAAC 1 cut(s) 561
HpaII CCGG 1 cut(s) 200
HphI GGTGA 2 cut(s) 329, 581
Hpy166II GTNNAC 2 cut(s) 112, 561
Hpy188I TCNGA 2 cut(s) 585, 740
Hpy188III TCNNGA 5 cut(s) 139, 164, 200, 365, 461
Hpy8I GTNNAC 2 cut(s) 112, 561
HpyAV CCTTC 5 cut(s) 83, 308, 412, 458, 782
HpyCH4III ACNGT 1 cut(s) 625
HpyCH4V TGCA 3 cut(s) 385, 422, 491
HpyF10VI GCNNNNNNNGC 3 cut(s) 241, 419, 428
HpyF3I CTNAG 6 cut(s) 79, 260, 514, 550, 582, 608
Hsp92II CATG 7 cut(s) 50, 142, 167, 271, 529, 538, 775
Kpn2I TCCGGA 1 cut(s) 199
Ksp22I TGATCA 2 cut(s) 175, 507
KspAI GTTAAC 1 cut(s) 561
Kzo9I GATC 5 cut(s) 175, 300, 485, 507, 678
LmnI GCTCC 1 cut(s) 286
Lsp1109I GCAGC 2 cut(s) 253, 406
LweI GCATC 1 cut(s) 102
MaeI CTAG 2 cut(s) 236, 777
MaeIII GTNAC 3 cut(s) 100, 569, 611
MalI GATC 5 cut(s) 177, 302, 487, 509, 680
MboI GATC 5 cut(s) 175, 300, 485, 507, 678
MboII GAAGA 4 cut(s) 310, 320, 323, 557
MflI RGATCY 1 cut(s) 485
MhlI GDGCHC 2 cut(s) 291, 364
MlsI TGGCCA 1 cut(s) 770
MluNI TGGCCA 1 cut(s) 770
MlyI GAGTC 2 cut(s) 144, 273
MnlI CCTC 2 cut(s) 214, 277
Mox20I TGGCCA 1 cut(s) 770
MroI TCCGGA 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 717
MscI TGGCCA 1 cut(s) 770
MseI TTAA 6 cut(s) 123, 455, 494, 560, 699, 813
MslI CAYNNNNRTG 1 cut(s) 107
Msp20I TGGCCA 1 cut(s) 770
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 3 cut(s) 216, 273, 745
MvaI CCWGG 3 cut(s) 216, 273, 745
MwoI GCNNNNNNNGC 3 cut(s) 241, 419, 428
NdeII GATC 5 cut(s) 175, 300, 485, 507, 678
NlaIII CATG 7 cut(s) 50, 142, 167, 271, 529, 538, 775
NmuCI GTSAC 2 cut(s) 100, 569
NspI RCATGY 1 cut(s) 529
OliI CACNNNNGTG 1 cut(s) 107
PagI TCATGA 2 cut(s) 138, 163
PdmI GAANNNNTTC 1 cut(s) 717
PfeI GAWTC 1 cut(s) 468
PkrI GCNGC 3 cut(s) 243, 421, 794
PleI GAGTC 2 cut(s) 143, 272
PpsI GAGTC 2 cut(s) 143, 272
PshAI GACNNNNGTC 1 cut(s) 779
PshBI ATTAAT 1 cut(s) 455
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 3 cut(s) 214, 271, 743
PspFI CCCAGC 1 cut(s) 34
PspGI CCWGG 3 cut(s) 214, 271, 743
PsuI RGATCY 1 cut(s) 485
PvuII CAGCTG 1 cut(s) 419
RseI CAYNNNNRTG 1 cut(s) 107
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 6 cut(s) 123, 455, 494, 560, 699, 813
SatI GCNGC 3 cut(s) 242, 420, 793
Sau3AI GATC 5 cut(s) 175, 300, 485, 507, 678
SchI GAGTC 2 cut(s) 144, 273
ScrFI CCNGG 3 cut(s) 216, 273, 745
SduI GDGCHC 2 cut(s) 291, 364
SetI ASST 8 cut(s) 40, 183, 237, 246, 291, 319, 421, 711
SfaNI GCATC 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
SsiI CCGC 1 cut(s) 792
SspI AATATT 1 cut(s) 810
SspMI CTAG 2 cut(s) 236, 777
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 3 cut(s) 214, 271, 743
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 625
TauI GCSGC 1 cut(s) 795
TfiI GAWTC 1 cut(s) 468
Tru1I TTAA 6 cut(s) 123, 455, 494, 560, 699, 813
Tru9I TTAA 6 cut(s) 123, 455, 494, 560, 699, 813
TscAI CASTG 1 cut(s) 438
TseFI GTSAC 2 cut(s) 100, 569
TseI GCWGC 2 cut(s) 241, 419
Tsp45I GTSAC 2 cut(s) 100, 569
TspDTI ATGAA 6 cut(s) 102, 155, 180, 551, 592, 811
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 1 cut(s) 438
VspI ATTAAT 1 cut(s) 455
XapI RAATTY 4 cut(s) 142, 733, 755, 817
XceI RCATGY 1 cut(s) 529
XmnI GAANNNNTTC 1 cut(s) 717
XspI CTAG 2 cut(s) 236, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.