Rh2AG585600

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000438
Physical Location & Seq
Forward (+)
81823569 .. 81825424
1856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG585600.1

Sequence Viewer

Length: 387 bp
ATGGGCCCCACAACAGAATGTTCTTTCCCATCCTTCGGTTGCTTGCTTCCTAAGTCACTGTGGGTGGAACTCTACAATGGAAGGTGTAAGCAACGAGATGGGTTAGAATCCCAAGAGGAAAGGAATGGGCCAGGGCTGCTATCCGAAGCAATACAAGCAGTCATGCACCAGAATTTGGAGGATCTCATAGAGAAGATCAACAAAGAGGAAGGTGAAAAAATCACTTGTCTCATAGCTGATGACAGTTGTGGGTGGGCTCTGGAAGTGGCACAAAAATTGAAGATTGCGAGGGTGGTTGCCTTTTGGCCTGCAGCAGCTGCAACTTTGGTATTGAACTTTTGTATCCCAAAATTAATTCATGAAGGAATCATTGACGATGATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

128

Amino Acids

14.12

Weight (kDa)

4.69

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 175
AclWI GGATC 1 cut(s) 189
AcsI RAATTY 1 cut(s) 172
AfiI CCNNNNNNNGG 2 cut(s) 35, 175
AgsI TTSAA 2 cut(s) 280, 334
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 2 cut(s) 236, 317
AluI AGCT 2 cut(s) 236, 317
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 1 cut(s) 189
AlwNI CAGNNNCTG 1 cut(s) 317
AoxI GGCC 3 cut(s) 4, 128, 305
ApaI GGGCCC 1 cut(s) 8
ApeKI GCWGC 4 cut(s) 136, 311, 314, 317
ApoI RAATTY 1 cut(s) 172
AseI ATTAAT 1 cut(s) 353
AspS9I GGNCC 3 cut(s) 4, 5, 128
AsuHPI GGTGA 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 8
BaeI ACNNNNGTAYC 2 cut(s) 325, 358
BanII GRGCYC 2 cut(s) 8, 259
BbvI GCAGC 4 cut(s) 123, 304, 323, 326
BccI CCATC 3 cut(s) 37, 92, 374
BciT130I CCWGG 1 cut(s) 132
BciVI GTATCC 1 cut(s) 353
BcoDI GTCTC 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 309
BfuI GTATCC 1 cut(s) 353
BisI GCNGC 4 cut(s) 137, 312, 315, 318
BlsI GCNGC 4 cut(s) 138, 313, 316, 319
Bme1390I CCNGG 1 cut(s) 132
BmgT120I GGNCC 3 cut(s) 4, 5, 128
BmiI GGNNCC 2 cut(s) 6, 7
BmrFI CCNGG 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 131
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 175
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 2 cut(s) 35, 175
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 4 cut(s) 123, 304, 323, 326
BshFI GGCC 3 cut(s) 6, 130, 307
BslI CCNNNNNNNGG 2 cut(s) 35, 175
BsmAI GTCTC 1 cut(s) 233
BsnI GGCC 3 cut(s) 6, 130, 307
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 2 cut(s) 8, 259
Bsp143I GATC 2 cut(s) 181, 195
BspANI GGCC 3 cut(s) 6, 130, 307
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 2 cut(s) 6, 7
BspMAI CTGCAG 1 cut(s) 313
BspPI GGATC 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 2 cut(s) 181, 195
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 60, 245
BstAPI GCANNNNNTGC 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 44, 309
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 29
BstKTI GATC 2 cut(s) 184, 198
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 2 cut(s) 181, 195
BstMWI GCNNNNNNNGC 3 cut(s) 136, 155, 317
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 309
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 4 cut(s) 123, 304, 323, 326
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuI GTATCC 1 cut(s) 353
BsuRI GGCC 3 cut(s) 6, 130, 307
BtsCI GGATG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 2 cut(s) 44, 309
CaiI CAGNNNCTG 1 cut(s) 317
CciI TCATGA 1 cut(s) 358
Cfr13I GGNCC 3 cut(s) 4, 5, 128
CviAII CATG 2 cut(s) 163, 359
CviJI RGCY 7 cut(s) 6, 130, 136, 236, 257, 307, 317
CviKI_1 RGCY 7 cut(s) 6, 130, 136, 236, 257, 307, 317
DdeI CTNAG 1 cut(s) 51
DpnI GATC 2 cut(s) 183, 197
DpnII GATC 2 cut(s) 181, 195
Eco24I GRGCYC 2 cut(s) 8, 259
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 130
EcoT38I GRGCYC 2 cut(s) 8, 259
FaeI CATG 2 cut(s) 166, 362
FaiI YATR 4 cut(s) 164, 188, 233, 360
FatI CATG 2 cut(s) 162, 358
Fnu4HI GCNGC 4 cut(s) 137, 312, 315, 318
FokI GGATG 1 cut(s) 16
FriOI GRGCYC 2 cut(s) 8, 259
Fsp4HI GCNGC 4 cut(s) 137, 312, 315, 318
GluI GCNGC 4 cut(s) 137, 312, 315, 318
HaeIII GGCC 3 cut(s) 6, 130, 307
Hin1II CATG 2 cut(s) 166, 362
HinfI GANTC 2 cut(s) 107, 366
HphI GGTGA 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 260, 359
HpyAV CCTTC 4 cut(s) 43, 75, 203, 356
HpyCH4III ACNGT 2 cut(s) 60, 245
HpyCH4V TGCA 3 cut(s) 166, 311, 320
HpyF10VI GCNNNNNNNGC 3 cut(s) 136, 155, 317
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 2 cut(s) 166, 362
Kzo9I GATC 2 cut(s) 181, 195
LpnPI CCDG 5 cut(s) 117, 144, 182, 245, 321
Lsp1109I GCAGC 4 cut(s) 123, 304, 323, 326
MaeIII GTNAC 1 cut(s) 54
MalI GATC 2 cut(s) 183, 197
MboI GATC 2 cut(s) 181, 195
MboII GAAGA 2 cut(s) 205, 292
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 2 cut(s) 8, 259
MluCI AATT 4 cut(s) 172, 275, 350, 354
MnlI CCTC 4 cut(s) 109, 172, 199, 282
MseI TTAA 1 cut(s) 353
MspA1I CMGCKG 1 cut(s) 317
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 136, 155, 317
NdeII GATC 2 cut(s) 181, 195
NlaIII CATG 2 cut(s) 166, 362
NlaIV GGNNCC 2 cut(s) 6, 7
NmuCI GTSAC 1 cut(s) 54
PagI TCATGA 1 cut(s) 358
PfeI GAWTC 2 cut(s) 107, 366
PflMI CCANNNNNTGG 1 cut(s) 175
PkrI GCNGC 4 cut(s) 138, 313, 316, 319
PshBI ATTAAT 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 6, 7
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 3 cut(s) 4, 5, 128
PstI CTGCAG 1 cut(s) 313
PstNI CAGNNNCTG 1 cut(s) 317
PsuI RGATCY 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 317
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 4 cut(s) 137, 312, 315, 318
Sau3AI GATC 2 cut(s) 181, 195
Sau96I GGNCC 3 cut(s) 4, 5, 128
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 2 cut(s) 8, 259
SetI ASST 4 cut(s) 86, 214, 238, 319
SfcI CTRYAG 1 cut(s) 309
Sse9I AATT 4 cut(s) 172, 275, 350, 354
StyD4I CCNGG 1 cut(s) 130
TaaI ACNGT 2 cut(s) 60, 245
TasI AATT 4 cut(s) 172, 275, 350, 354
TfiI GAWTC 2 cut(s) 107, 366
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 1 cut(s) 54
TseI GCWGC 4 cut(s) 136, 311, 314, 317
Tsp45I GTSAC 1 cut(s) 54
TspDTI ATGAA 2 cut(s) 347, 375
TspRI CASTG 1 cut(s) 63
Van91I CCANNNNNTGG 1 cut(s) 175
VspI ATTAAT 1 cut(s) 353
XapI RAATTY 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.