Rh2AG585700

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000438
Physical Location & Seq
Forward (+)
81825756 .. 81833340
7585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG585700.1

Sequence Viewer

Length: 462 bp
ATGATCATTCAATTTTGGCATGCAGGAACTGTATTGAAAAGCCAGATGGTTCAGTTGGCACCAAAAATGCCCCTAATTAAATCTACAAACTTTGTGTGGGCGTGTACAGGAAATTCAAGCACTCAGAAAATCCTATTCCAATTTATGGAGAGAACCAACAAGAATGCAAAATTGGTAGACTGGCTTGTTTGCAACTCAGCATACGAAATGGAGCCAGCAGCATTCGCTTTGGAACCACAGATATTACCGATAGGCCCGCTTTTGGCTAGCAGCCGCCTTGGCAACTCAGCAGGCAGCTTGTGGCCAACAGACTCAACTTGCTTAAATTGCTGCAGGCCTGCAGCATATGGCACAGCACAGTTTGGTAGTCGATCTCTCAATAGTCTAAATTCTTGTTCCAAAACTTCACAAGTAATTAATATGAAATTACCCTGGAATGAACCAGACACACATAAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

153

Amino Acids

16.9

Weight (kDa)

9.0

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 58
AccB7I CCANNNNNTGG 1 cut(s) 145
AccI GTMKAC 1 cut(s) 177
AciI CCGC 2 cut(s) 257, 274
AcoI YGGCCR 1 cut(s) 302
AcsI RAATTY 2 cut(s) 112, 388
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 2 cut(s) 145, 262
AgsI TTSAA 3 cut(s) 11, 37, 117
AjnI CCWGG 1 cut(s) 431
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 3 cut(s) 253, 302, 335
ApeKI GCWGC 5 cut(s) 218, 270, 294, 330, 341
ApoI RAATTY 2 cut(s) 112, 388
AseI ATTAAT 1 cut(s) 417
AspS9I GGNCC 1 cut(s) 254
AsuNHI GCTAGC 1 cut(s) 266
BalI TGGCCA 1 cut(s) 304
BanI GGYRCC 1 cut(s) 58
BbvI GCAGC 5 cut(s) 230, 282, 306, 317, 353
BccI CCATC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 433
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 2 cut(s) 331, 339
BglI GCCNNNNNGGC 1 cut(s) 279
BisI GCNGC 6 cut(s) 219, 271, 274, 295, 331, 342
BlsI GCNGC 6 cut(s) 220, 272, 275, 296, 332, 343
Bme1390I CCNGG 1 cut(s) 433
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 3 cut(s) 60, 213, 234
BmrFI CCNGG 1 cut(s) 433
BmtI GCTAGC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 277, 431
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 262
Bse1I ACTGG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 433
BseDI CCNNGG 2 cut(s) 277, 431
BseLI CCNNNNNNNGG 2 cut(s) 145, 262
BseMII CTCAG 3 cut(s) 137, 210, 300
BseNI ACTGG 1 cut(s) 185
BseXI GCAGC 5 cut(s) 230, 282, 306, 317, 353
BshFI GGCC 3 cut(s) 255, 304, 337
BshNI GGYRCC 1 cut(s) 58
BslI CCNNNNNNNGG 2 cut(s) 145, 262
BsmI GAATGC 2 cut(s) 169, 221
BsnI GGCC 3 cut(s) 255, 304, 337
Bsp1407I TGTACA 1 cut(s) 104
Bsp143I GATC 2 cut(s) 3, 371
BspACI CCGC 2 cut(s) 257, 274
BspANI GGCC 3 cut(s) 255, 304, 337
BspCNI CTCAG 3 cut(s) 136, 209, 299
BspLI GGNNCC 3 cut(s) 60, 213, 234
BspMAI CTGCAG 2 cut(s) 335, 343
BspOI GCTAGC 1 cut(s) 270
BspT107I GGYRCC 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 104
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 277, 431
BssMI GATC 2 cut(s) 3, 371
BssT1I CCWWGG 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 433
Bst4CI ACNGT 2 cut(s) 31, 360
BstAUI TGTACA 1 cut(s) 104
BstC8I GCNNGC 7 cut(s) 21, 216, 257, 268, 292, 335, 339
BstDEI CTNAG 3 cut(s) 123, 196, 286
BstKTI GATC 2 cut(s) 6, 374
BstMBI GATC 2 cut(s) 3, 371
BstMWI GCNNNNNNNGC 3 cut(s) 224, 279, 327
BstNI CCWGG 1 cut(s) 433
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 431
BstSFI CTRYAG 2 cut(s) 331, 339
BstV1I GCAGC 5 cut(s) 230, 282, 306, 317, 353
BsuRI GGCC 3 cut(s) 255, 304, 337
Cac8I GCNNGC 7 cut(s) 21, 216, 257, 268, 292, 335, 339
CaiI CAGNNNCTG 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 105
CviAII CATG 1 cut(s) 20
CviJI RGCY 9 cut(s) 42, 184, 214, 255, 266, 273, 297, 304, 337
CviKI_1 RGCY 9 cut(s) 42, 184, 214, 255, 266, 273, 297, 304, 337
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 3 cut(s) 123, 196, 286
DpnI GATC 2 cut(s) 5, 373
DpnII GATC 2 cut(s) 3, 371
EaeI YGGCCR 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 277
Eco147I AGGCCT 1 cut(s) 337
EcoRII CCWGG 1 cut(s) 431
EcoT14I CCWWGG 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 277
FaeI CATG 1 cut(s) 23
FaiI YATR 7 cut(s) 21, 146, 202, 346, 348, 422, 453
FatI CATG 1 cut(s) 19
FauI CCCGC 1 cut(s) 264
FauNDI CATATG 1 cut(s) 346
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 6 cut(s) 219, 271, 274, 295, 331, 342
Fsp4HI GCNGC 6 cut(s) 219, 271, 274, 295, 331, 342
FspBI CTAG 1 cut(s) 267
GluI GCNGC 6 cut(s) 219, 271, 274, 295, 331, 342
HaeIII GGCC 3 cut(s) 255, 304, 337
Hin1II CATG 1 cut(s) 23
HinfI GANTC 1 cut(s) 311
Hpy166II GTNNAC 2 cut(s) 105, 178
Hpy188I TCNGA 1 cut(s) 126
Hpy8I GTNNAC 2 cut(s) 105, 178
HpyCH4III ACNGT 2 cut(s) 31, 360
HpyCH4V TGCA 5 cut(s) 23, 167, 192, 333, 341
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 279, 327
HpyF3I CTNAG 3 cut(s) 123, 196, 286
Hsp92II CATG 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 371
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 5 cut(s) 230, 282, 306, 317, 353
MaeI CTAG 1 cut(s) 267
MalI GATC 2 cut(s) 5, 373
MboI GATC 2 cut(s) 3, 371
MlsI TGGCCA 1 cut(s) 304
MluNI TGGCCA 1 cut(s) 304
MlyI GAGTC 1 cut(s) 305
Mox20I TGGCCA 1 cut(s) 304
MscI TGGCCA 1 cut(s) 304
MseI TTAA 4 cut(s) 78, 323, 417, 460
Msp20I TGGCCA 1 cut(s) 304
MspR9I CCNGG 1 cut(s) 433
Mva1269I GAATGC 2 cut(s) 169, 221
MvaI CCWGG 1 cut(s) 433
MwoI GCNNNNNNNGC 3 cut(s) 224, 279, 327
NdeI CATATG 1 cut(s) 346
NdeII GATC 2 cut(s) 3, 371
NheI GCTAGC 1 cut(s) 266
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 3 cut(s) 60, 213, 234
NspI RCATGY 1 cut(s) 23
PaeI GCATGC 1 cut(s) 23
PceI AGGCCT 1 cut(s) 337
PctI GAATGC 2 cut(s) 169, 221
PflMI CCANNNNNTGG 1 cut(s) 145
PkrI GCNGC 6 cut(s) 220, 272, 275, 296, 332, 343
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
PshBI ATTAAT 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 431
PspGI CCWGG 1 cut(s) 431
PspN4I GGNNCC 3 cut(s) 60, 213, 234
PspPI GGNCC 1 cut(s) 254
PstI CTGCAG 2 cut(s) 335, 343
PstNI CAGNNNCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SaqAI TTAA 4 cut(s) 78, 323, 417, 460
SatI GCNGC 6 cut(s) 219, 271, 274, 295, 331, 342
Sau3AI GATC 2 cut(s) 3, 371
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 433
SetI ASST 1 cut(s) 299
SfcI CTRYAG 2 cut(s) 331, 339
SphI GCATGC 1 cut(s) 23
SseBI AGGCCT 1 cut(s) 337
SsiI CCGC 2 cut(s) 257, 274
SspMI CTAG 1 cut(s) 267
StuI AGGCCT 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 431
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 2 cut(s) 31, 360
TaqI TCGA 1 cut(s) 370
TatI WGTACW 1 cut(s) 104
TauI GCSGC 1 cut(s) 276
Tru1I TTAA 4 cut(s) 78, 323, 417, 460
Tru9I TTAA 4 cut(s) 78, 323, 417, 460
TseI GCWGC 5 cut(s) 218, 270, 294, 330, 341
TspDTI ATGAA 2 cut(s) 437, 453
Van91I CCANNNNNTGG 1 cut(s) 145
VspI ATTAAT 1 cut(s) 417
XapI RAATTY 2 cut(s) 112, 388
XceI RCATGY 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.