Rmu_sc0006218.1_g000016

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006218.1
OG0000438
Physical Location & Seq
Forward (+)
75798 .. 77154
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006218.1_g000016.1.cds

Sequence Viewer

Length: 1071 bp
atgaatgccgtggctgatgaaactcatagaggggatgatcagcttcatctggtttcaattccagatgggttagaaccatgggaggataggaatgagctgggtcagttatgtgaagcaatataccgagtgatgcctgggaagttggaggagctcatagagaagattaatggaggagaaggtgacaaaataacttgtgtcattgctgatttcagtatcgggtgggctctggaagtggcagggaaaatgaatatcaaaagtgttgccttttttcctgcagcagctgcagttttggctttgaatttttctattccacagttaatacatgaaggaatcattaatagtgatggctgggttatttgcaactcaacatttgacctcgaaccagcagcatttgccttggcacccgagattttaccaataggccctcttttggcaagcagccggcttggaaaaacagcaggaaacttctggccagcggattccacttgcttggattggctcgatcaacaaccaccctgctcagtcatctatgttgcatttggaagcttcacagtttttgatcaaacccaattccatgaattggctttaggtcttgaactgtctaataggccattcctgtgggttgtgaggccagacatctctgaaagtactccctatccagaaggataccaagaacgagtaggctctaagggaatgatggtgggatgggcaccccaacagaaggttctatcccatccttcaattgcttgcttcctaagtcactgtggttggaactctaccatggaaggtgtaagcaatgggcttcctttcttgtgctggccatattttgctgaccagctctttaacgagggctacatttgcgatgtttgggaggtgggattgaggtttgataagaatgagagtggaatcatcccgaaaggagaaatcaagaacaaggtggaacaacttcttggagacgaaaattatagagcaagggcttctaaactcaaggaaatggccatgactaatgtcgaagaaggaggccaatctaacaagatcttcaagaatttaattgaatggataaagtcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

356

Amino Acids

39.46

Weight (kDa)

4.68

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 400, 709
AccB7I CCANNNNNTGG 1 cut(s) 580
AciI CCGC 1 cut(s) 476
AcoI YGGCCR 3 cut(s) 470, 818, 996
AcsI RAATTY 2 cut(s) 298, 1045
AfaI GTAC 1 cut(s) 649
AfiI CCNNNNNNNGG 3 cut(s) 430, 580, 721
AgsI TTSAA 6 cut(s) 57, 298, 596, 741, 1042, 1055
AjnI CCWGG 1 cut(s) 133
AjuI GAANNNNNNNTTGG 4 cut(s) 708, 740, 933, 965
AluBI AGCT 6 cut(s) 43, 97, 151, 281, 546, 838
AluI AGCT 6 cut(s) 43, 97, 151, 281, 546, 838
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 948
AlwNI CAGNNNCTG 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 404
AoxI GGCC 7 cut(s) 421, 470, 608, 629, 818, 996, 1021
ApeKI GCWGC 5 cut(s) 275, 278, 281, 386, 438
ApoI RAATTY 2 cut(s) 298, 1045
AseI ATTAAT 2 cut(s) 165, 336
Asp700I GAANNNNTTC 1 cut(s) 945
AspS9I GGNCC 1 cut(s) 422
AsuHPI GGTGA 1 cut(s) 191
AvaI CYCGRG 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 712
BalI TGGCCA 3 cut(s) 472, 820, 998
BanI GGYRCC 2 cut(s) 400, 709
BanII GRGCYC 2 cut(s) 153, 226
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 5 cut(s) 268, 287, 290, 398, 450
BccI CCATC 5 cut(s) 59, 338, 691, 699, 741
BciT130I CCWGG 1 cut(s) 135
BciVI GTATCC 1 cut(s) 659
BclI TGATCA 2 cut(s) 37, 559
BcoDI GTCTC 1 cut(s) 948
BfmI CTRYAG 2 cut(s) 273, 282
BfuI GTATCC 1 cut(s) 659
BglII AGATCT 1 cut(s) 1035
BisI GCNGC 5 cut(s) 276, 279, 282, 387, 439
BlsI GCNGC 5 cut(s) 277, 280, 283, 388, 440
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 1 cut(s) 135
BmeT110I CYCGRG 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 422
BmiI GGNNCC 2 cut(s) 402, 711
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 1 cut(s) 120
BoxI GACNNNNGTC 1 cut(s) 1007
BpuEI CTTGAG 1 cut(s) 971
BsaJI CCNNGG 5 cut(s) 9, 77, 134, 396, 780
Bsc4I CCNNNNNNNGG 3 cut(s) 430, 580, 721
Bse118I RCCGGY 1 cut(s) 441
Bse3DI GCAATG 2 cut(s) 198, 802
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 5 cut(s) 9, 77, 134, 396, 780
BseGI GGATG 4 cut(s) 40, 710, 733, 909
BseLI CCNNNNNNNGG 3 cut(s) 430, 580, 721
BseMI GCAATG 2 cut(s) 198, 802
BseMII CTCAG 1 cut(s) 534
BseRI GAGGAG 2 cut(s) 161, 186
BseSI GKGCMC 1 cut(s) 712
BseXI GCAGC 5 cut(s) 268, 287, 290, 398, 450
BseYI CCCAGC 2 cut(s) 97, 348
BshFI GGCC 7 cut(s) 423, 472, 610, 631, 820, 998, 1023
BshNI GGYRCC 2 cut(s) 400, 709
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 1 cut(s) 442
BslI CCNNNNNNNGG 3 cut(s) 430, 580, 721
BsmAI GTCTC 1 cut(s) 948
BsmBI CGTCTC 1 cut(s) 948
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 7 cut(s) 423, 472, 610, 631, 820, 998, 1023
BsoBI CYCGRG 1 cut(s) 404
Bsp1286I GDGCHC 3 cut(s) 153, 226, 712
Bsp143I GATC 4 cut(s) 37, 502, 559, 1035
Bsp19I CCATGG 2 cut(s) 77, 780
BspACI CCGC 1 cut(s) 476
BspANI GGCC 7 cut(s) 423, 472, 610, 631, 820, 998, 1023
BspCNI CTCAG 1 cut(s) 533
BspLI GGNNCC 2 cut(s) 402, 711
BspMAI CTGCAG 2 cut(s) 277, 286
BspT107I GGYRCC 2 cut(s) 400, 709
BsrDI GCAATG 2 cut(s) 198, 802
BsrFI RCCGGY 1 cut(s) 441
BssAI RCCGGY 1 cut(s) 441
BssECI CCNNGG 5 cut(s) 9, 77, 134, 396, 780
BssMI GATC 4 cut(s) 37, 502, 559, 1035
BssT1I CCWWGG 3 cut(s) 77, 396, 780
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 4 cut(s) 315, 553, 600, 764
BstAPI GCANNNNNTGC 2 cut(s) 281, 392
BstC8I GCNNGC 5 cut(s) 436, 443, 474, 748, 818
BstDEI CTNAG 3 cut(s) 520, 687, 755
BstDSI CCRYGG 3 cut(s) 9, 77, 780
BstF5I GGATG 4 cut(s) 40, 710, 733, 909
BstKTI GATC 4 cut(s) 40, 505, 562, 1038
BstMAI GTCTC 1 cut(s) 948
BstMBI GATC 4 cut(s) 37, 502, 559, 1035
BstMWI GCNNNNNNNGC 4 cut(s) 281, 290, 392, 858
BstNI CCWGG 1 cut(s) 135
BstPAI GACNNNNGTC 1 cut(s) 1007
BstSCI CCNGG 1 cut(s) 133
BstSFI CTRYAG 2 cut(s) 273, 282
BstSLI GKGCMC 1 cut(s) 712
BstV1I GCAGC 5 cut(s) 268, 287, 290, 398, 450
BstX2I RGATCY 1 cut(s) 1035
BstXI CCANNNNNNTGG 2 cut(s) 490, 618
BstYI RGATCY 1 cut(s) 1035
BsuI GTATCC 1 cut(s) 659
BsuRI GGCC 7 cut(s) 423, 472, 610, 631, 820, 998, 1023
BtgI CCRYGG 3 cut(s) 9, 77, 780
BtgZI GCGATG 1 cut(s) 876
BtsCI GGATG 4 cut(s) 40, 710, 733, 909
BtsIMutI CAGTG 1 cut(s) 760
Cac8I GCNNGC 5 cut(s) 436, 443, 474, 748, 818
CaiI CAGNNNCTG 1 cut(s) 281
Cfr10I RCCGGY 1 cut(s) 441
Cfr13I GGNCC 1 cut(s) 422
Csp6I GTAC 1 cut(s) 648
CviAII CATG 5 cut(s) 78, 323, 575, 781, 1000
CviQI GTAC 1 cut(s) 648
DdeI CTNAG 3 cut(s) 520, 687, 755
DpnI GATC 4 cut(s) 39, 504, 561, 1037
DpnII GATC 4 cut(s) 37, 502, 559, 1035
EaeI YGGCCR 3 cut(s) 470, 818, 996
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 3 cut(s) 77, 396, 780
Eco24I GRGCYC 2 cut(s) 153, 226
Eco53kI GAGCTC 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 404
EcoICRI GAGCTC 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 133
EcoT14I CCWWGG 3 cut(s) 77, 396, 780
EcoT38I GRGCYC 2 cut(s) 153, 226
ErhI CCWWGG 3 cut(s) 77, 396, 780
Esp3I CGTCTC 1 cut(s) 948
FaeI CATG 5 cut(s) 81, 326, 578, 784, 1003
FatI CATG 5 cut(s) 77, 322, 574, 780, 999
FbaI TGATCA 2 cut(s) 37, 559
Fnu4HI GCNGC 5 cut(s) 276, 279, 282, 387, 439
FokI GGATG 4 cut(s) 47, 717, 720, 896
FriOI GRGCYC 2 cut(s) 153, 226
Fsp4HI GCNGC 5 cut(s) 276, 279, 282, 387, 439
GluI GCNGC 5 cut(s) 276, 279, 282, 387, 439
GsaI CCCAGC 2 cut(s) 101, 352
HaeIII GGCC 7 cut(s) 423, 472, 610, 631, 820, 998, 1023
HapII CCGG 1 cut(s) 442
Hin1II CATG 5 cut(s) 81, 326, 578, 784, 1003
HindIII AAGCTT 1 cut(s) 544
HinfI GANTC 3 cut(s) 330, 479, 906
HpaII CCGG 1 cut(s) 442
HphI GGTGA 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 643
Hpy188III TCNNGA 7 cut(s) 62, 227, 593, 659, 913, 928, 1042
HpyAV CCTTC 7 cut(s) 170, 320, 656, 715, 747, 779, 1010
HpyCH4III ACNGT 4 cut(s) 315, 553, 600, 764
HpyCH4V TGCA 4 cut(s) 275, 284, 360, 536
HpyF10VI GCNNNNNNNGC 4 cut(s) 281, 290, 392, 858
HpyF3I CTNAG 3 cut(s) 520, 687, 755
Hsp92II CATG 5 cut(s) 81, 326, 578, 784, 1003
KroI GCCGGC 1 cut(s) 441
KroNI GCCGGC 1 cut(s) 443
Ksp22I TGATCA 2 cut(s) 37, 559
Kzo9I GATC 4 cut(s) 37, 502, 559, 1035
LmnI GCTCC 1 cut(s) 148
Lsp1109I GCAGC 5 cut(s) 268, 287, 290, 398, 450
LweI GCATC 1 cut(s) 120
MaeIII GTNAC 2 cut(s) 179, 758
MalI GATC 4 cut(s) 39, 504, 561, 1037
MboI GATC 4 cut(s) 37, 502, 559, 1035
MboII GAAGA 3 cut(s) 172, 1025, 1030
MfeI CAATTG 1 cut(s) 741
MflI RGATCY 1 cut(s) 1035
MhlI GDGCHC 3 cut(s) 153, 226, 712
MlsI TGGCCA 3 cut(s) 472, 820, 998
MluCI AATT 8 cut(s) 57, 298, 569, 578, 741, 961, 1045, 1050
MluNI TGGCCA 3 cut(s) 472, 820, 998
MmeI TCCRAC 2 cut(s) 123, 749
Mox20I TGGCCA 3 cut(s) 472, 820, 998
MroNI GCCGGC 1 cut(s) 441
MroXI GAANNNNTTC 1 cut(s) 945
MscI TGGCCA 3 cut(s) 472, 820, 998
MseI TTAA 5 cut(s) 165, 317, 336, 843, 1049
MslI CAYNNNNRTG 1 cut(s) 616
Msp20I TGGCCA 3 cut(s) 472, 820, 998
MspA1I CMGCKG 2 cut(s) 281, 476
MspI CCGG 1 cut(s) 442
MspR9I CCNGG 1 cut(s) 135
MunI CAATTG 1 cut(s) 741
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 135
MwoI GCNNNNNNNGC 4 cut(s) 281, 290, 392, 858
NaeI GCCGGC 1 cut(s) 443
NcoI CCATGG 2 cut(s) 77, 780
NdeII GATC 4 cut(s) 37, 502, 559, 1035
NgoMIV GCCGGC 1 cut(s) 441
NlaIII CATG 5 cut(s) 81, 326, 578, 784, 1003
NlaIV GGNNCC 2 cut(s) 402, 711
NmuCI GTSAC 2 cut(s) 179, 758
PctI GAATGC 1 cut(s) 10
PdiI GCCGGC 1 cut(s) 443
PdmI GAANNNNTTC 1 cut(s) 945
PfeI GAWTC 3 cut(s) 330, 479, 906
PflMI CCANNNNNTGG 1 cut(s) 580
PkrI GCNGC 5 cut(s) 277, 280, 283, 388, 440
PshAI GACNNNNGTC 1 cut(s) 1007
PshBI ATTAAT 2 cut(s) 165, 336
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 133
PspFI CCCAGC 2 cut(s) 97, 348
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 2 cut(s) 402, 711
PspPI GGNCC 1 cut(s) 422
PstI CTGCAG 2 cut(s) 277, 286
PstNI CAGNNNCTG 1 cut(s) 281
PsuI RGATCY 1 cut(s) 1035
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 1 cut(s) 649
RsaNI GTAC 1 cut(s) 648
RseI CAYNNNNRTG 1 cut(s) 616
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 5 cut(s) 165, 317, 336, 843, 1049
SatI GCNGC 5 cut(s) 276, 279, 282, 387, 439
Sau3AI GATC 4 cut(s) 37, 502, 559, 1035
Sau96I GGNCC 1 cut(s) 422
ScaI AGTACT 1 cut(s) 649
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 3 cut(s) 153, 226, 712
SfaNI GCATC 1 cut(s) 120
SfcI CTRYAG 2 cut(s) 273, 282
SmiMI CAYNNNNRTG 1 cut(s) 616
SmlI CTYRAG 1 cut(s) 986
SmoI CTYRAG 1 cut(s) 986
Sse9I AATT 8 cut(s) 57, 298, 569, 578, 741, 961, 1045, 1050
SsiI CCGC 1 cut(s) 476
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 3 cut(s) 77, 396, 780
TaaI ACNGT 4 cut(s) 315, 553, 600, 764
TaqI TCGA 3 cut(s) 378, 501, 1011
TasI AATT 8 cut(s) 57, 298, 569, 578, 741, 961, 1045, 1050
TatI WGTACW 1 cut(s) 647
TfiI GAWTC 3 cut(s) 330, 479, 906
Tru1I TTAA 5 cut(s) 165, 317, 336, 843, 1049
Tru9I TTAA 5 cut(s) 165, 317, 336, 843, 1049
TscAI CASTG 1 cut(s) 767
TseFI GTSAC 2 cut(s) 179, 758
TseI GCWGC 5 cut(s) 275, 278, 281, 386, 438
Tsp45I GTSAC 2 cut(s) 179, 758
TspDTI ATGAA 6 cut(s) 17, 33, 35, 260, 339, 591
TspRI CASTG 1 cut(s) 767
Van91I CCANNNNNTGG 1 cut(s) 580
VspI ATTAAT 2 cut(s) 165, 336
XapI RAATTY 2 cut(s) 298, 1045
XmnI GAANNNNTTC 1 cut(s) 945
ZrmI AGTACT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.