Rh2AG585500

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000438
Physical Location & Seq
Forward (+)
81820504 .. 81821000
497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG585500.1

Sequence Viewer

Length: 375 bp
ATGGTAGGATGGGCCCCCCAGCAGAAGGTTCTGGCCCATCCTTCAATTGCTTGCTTCCTAAGCCACTGTGGTTGGAACTCTACCTTGGAAGGTCTAAGCAATGGGGTTCCTTTCTTGTGTTGGCCATACTTCGCAGACCAGTTCCTTGATGAGAGTTACATTTGTGATGTTTGGAATGTGGGATTGAAGTTTGATAAGAATGAGAGTGGGATCATTCCTAAAGGAGAAATTAACAACAAGGTGGAACAACTTCTTGGCGACGAAAATTTCAGAGCCAGGGCTTCAAAACTCAAGGAAATGGCCATGACTAGTGTCAAAGAAGGTGGCCAGTCTAACAAGATATTTAAGAATTTCATTGAATGGATGAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

124

Amino Acids

14.04

Weight (kDa)

6.09

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 2 - 98 1.2e-16 UDP-glucoronosyl and UDP-glucosyl transferase
EryCIII-like_C PF06722 2 - 102 1.3e-06 Erythromycin biosynthesis protein CIII-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 3 cut(s) 122, 300, 325
AcsI RAATTY 2 cut(s) 265, 349
AfiI CCNNNNNNNGG 1 cut(s) 25
AgsI TTSAA 4 cut(s) 45, 187, 285, 359
AhlI ACTAGT 1 cut(s) 308
AjnI CCWGG 1 cut(s) 275
AjuI GAANNNNNNNTTGG 4 cut(s) 68, 100, 237, 269
AlwI GGATC 1 cut(s) 218
AoxI GGCC 5 cut(s) 12, 33, 122, 300, 325
ApaI GGGCCC 1 cut(s) 16
ApoI RAATTY 2 cut(s) 265, 349
Asp700I GAANNNNTTC 1 cut(s) 249
AspS9I GGNCC 3 cut(s) 12, 13, 34
BaeGI GKGCMC 1 cut(s) 16
BalI TGGCCA 3 cut(s) 124, 302, 327
BanII GRGCYC 1 cut(s) 16
BccI CCATC 2 cut(s) 3, 45
BciT130I CCWGG 1 cut(s) 277
BcuI ACTAGT 1 cut(s) 308
BfaI CTAG 1 cut(s) 309
Bme1390I CCNGG 1 cut(s) 277
BmgT120I GGNCC 3 cut(s) 12, 13, 34
BmiI GGNNCC 3 cut(s) 14, 15, 108
BmrFI CCNGG 1 cut(s) 277
BoxI GACNNNNGTC 1 cut(s) 311
Bpu10I CCTNAGC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 84, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse1I ACTGG 2 cut(s) 139, 328
Bse3DI GCAATG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 277
BseDI CCNNGG 2 cut(s) 84, 276
BseGI GGATG 3 cut(s) 14, 37, 369
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMI GCAATG 1 cut(s) 106
BseNI ACTGG 2 cut(s) 139, 328
BseSI GKGCMC 1 cut(s) 16
BseYI CCCAGC 1 cut(s) 18
BshFI GGCC 5 cut(s) 14, 35, 124, 302, 327
BslI CCNNNNNNNGG 1 cut(s) 25
BsnI GGCC 5 cut(s) 14, 35, 124, 302, 327
Bsp120I GGGCCC 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 210
BspANI GGCC 5 cut(s) 14, 35, 124, 302, 327
BspLI GGNNCC 3 cut(s) 14, 15, 108
BspPI GGATC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 106
BsrI ACTGG 2 cut(s) 139, 328
BssECI CCNNGG 2 cut(s) 84, 276
BssMI GATC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 2 cut(s) 59, 95
BstF5I GGATG 3 cut(s) 14, 37, 369
BstKTI GATC 1 cut(s) 213
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstNI CCWGG 1 cut(s) 277
BstPAI GACNNNNGTC 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 275
BstSLI GKGCMC 1 cut(s) 16
BsuRI GGCC 5 cut(s) 14, 35, 124, 302, 327
BtsCI GGATG 3 cut(s) 14, 37, 369
BtsIMutI CAGTG 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 52
Cfr13I GGNCC 3 cut(s) 12, 13, 34
CspCI CAANNNNNGTGG 4 cut(s) 53, 88, 304, 339
CviAII CATG 1 cut(s) 304
CviJI RGCY 8 cut(s) 14, 35, 63, 124, 275, 281, 302, 327
CviKI_1 RGCY 8 cut(s) 14, 35, 63, 124, 275, 281, 302, 327
DdeI CTNAG 2 cut(s) 59, 95
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
EaeI YGGCCR 3 cut(s) 122, 300, 325
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 16
EcoO109I RGGNCCY 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 307
FaiI YATR 3 cut(s) 127, 305, 373
FatI CATG 1 cut(s) 303
FokI GGATG 2 cut(s) 21, 24
FriOI GRGCYC 1 cut(s) 16
FspBI CTAG 1 cut(s) 309
GsaI CCCAGC 1 cut(s) 22
HaeIII GGCC 5 cut(s) 14, 35, 124, 302, 327
Hin1II CATG 1 cut(s) 307
Hpy188I TCNGA 1 cut(s) 272
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 4 cut(s) 19, 51, 83, 314
HpyCH4III ACNGT 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpyF3I CTNAG 2 cut(s) 59, 95
Hsp92II CATG 1 cut(s) 307
Kzo9I GATC 1 cut(s) 210
LpnPI CCDG 6 cut(s) 17, 32, 152, 262, 289, 341
MaeI CTAG 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MfeI CAATTG 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 16
MlsI TGGCCA 3 cut(s) 124, 302, 327
MluCI AATT 4 cut(s) 45, 228, 265, 349
MluNI TGGCCA 3 cut(s) 124, 302, 327
MmeI TCCRAC 1 cut(s) 53
Mox20I TGGCCA 3 cut(s) 124, 302, 327
MroXI GAANNNNTTC 1 cut(s) 249
MscI TGGCCA 3 cut(s) 124, 302, 327
MseI TTAA 2 cut(s) 231, 345
Msp20I TGGCCA 3 cut(s) 124, 302, 327
MspR9I CCNGG 1 cut(s) 277
MunI CAATTG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 277
MwoI GCNNNNNNNGC 1 cut(s) 60
NdeII GATC 1 cut(s) 210
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 3 cut(s) 14, 15, 108
PdmI GAANNNNTTC 1 cut(s) 249
PshAI GACNNNNGTC 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 275
PspFI CCCAGC 1 cut(s) 18
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 3 cut(s) 14, 15, 108
PspOMI GGGCCC 1 cut(s) 12
PspPI GGNCC 3 cut(s) 12, 13, 34
SaqAI TTAA 2 cut(s) 231, 345
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 3 cut(s) 12, 13, 34
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 1 cut(s) 16
SetI ASST 5 cut(s) 30, 86, 94, 243, 325
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SpeI ACTAGT 1 cut(s) 308
Sse9I AATT 4 cut(s) 45, 228, 265, 349
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 68
TasI AATT 4 cut(s) 45, 228, 265, 349
Tru1I TTAA 2 cut(s) 231, 345
Tru9I TTAA 2 cut(s) 231, 345
TscAI CASTG 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 343
TspRI CASTG 1 cut(s) 71
XapI RAATTY 2 cut(s) 265, 349
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.