Rmu_ssc0000076.1_g000012

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000076.1
OG0000438
Physical Location & Seq
Reverse (-)
66652 .. 67512
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000076.1_g000012.1.cds

Sequence Viewer

Length: 861 bp
atgatcaacttagcaccaaacatgcccaccatgaaaactgaagacttagcgtggttaaccattggtgacaaaaccactcagaaaattatattccaattgattctaagtaacaacaagactgtgaaattggctgactgggttgtatgcaactcagcattcgacctagaaccaggagcattcaccttggcaccacagattttaccaataggcccgcttttggcaagcaatcgccttgatgattcagctggaaacttctggccaccagactcaacttgcttagaatggcttgatcaacaacctccttgttcagtcatctatgttgcttttgggagcttcacaatttttgatcaaacccagttccaagaattggctttggctcttgaactgtccaataggccattcctatgggttgtgaggccagacatctctgaaagtactgcttacccagaaggatatgaagaaagagtagtaggctctaaagggttgatggtaggatgggccccccagcagaaggttctggcccatccttcaattgcttgctttctaagccattgtggttggaattctaccttggaaggtctaagcaatggggttcctttcttatgttggccatactttgcggaccagtttcttgatgagagttacatttgtgatgtttggaaggtgggattgaagtttgataagaatgagagtgggatcattcctaaaggagaaattaacaataaggtggaacaacttcttggcgatgaaaatttcagagccagggcttcaaaattcaaggaaatggctatgactagcgtcaaaaaaggcggccagtctaacaagatatttaagaatttcattgaatggatgaagtcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

286

Amino Acids

32.1

Weight (kDa)

5.01

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 187
AccB7I CCANNNNNTGG 1 cut(s) 367
AciI CCGC 3 cut(s) 212, 620, 810
AclWI GGATC 1 cut(s) 704
AcoI YGGCCR 3 cut(s) 257, 608, 811
AcsI RAATTY 4 cut(s) 562, 751, 773, 835
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 3 cut(s) 217, 367, 511
AgsI TTSAA 6 cut(s) 383, 531, 673, 771, 778, 845
AjnI CCWGG 2 cut(s) 169, 761
AjuI GAANNNNNNNTTGG 6 cut(s) 383, 415, 554, 586, 723, 755
AluBI AGCT 2 cut(s) 245, 333
AluI AGCT 2 cut(s) 245, 333
AlwI GGATC 1 cut(s) 704
AoxI GGCC 8 cut(s) 208, 257, 395, 416, 498, 519, 608, 811
ApaI GGGCCC 1 cut(s) 502
ApoI RAATTY 4 cut(s) 562, 751, 773, 835
Asp700I GAANNNNTTC 1 cut(s) 735
AspS9I GGNCC 5 cut(s) 209, 498, 499, 520, 622
AsuHPI GGTGA 2 cut(s) 77, 172
AvaII GGWCC 1 cut(s) 622
BaeGI GKGCMC 1 cut(s) 502
BalI TGGCCA 2 cut(s) 259, 610
BanI GGYRCC 1 cut(s) 187
BanII GRGCYC 1 cut(s) 502
BbsI GAAGAC 1 cut(s) 48
BccI CCATC 3 cut(s) 481, 489, 531
BciT130I CCWGG 2 cut(s) 171, 763
BclI TGATCA 3 cut(s) 3, 289, 346
BfaI CTAG 2 cut(s) 164, 795
BisI GCNGC 1 cut(s) 811
BlsI GCNGC 1 cut(s) 812
BmcAI AGTACT 1 cut(s) 436
Bme1390I CCNGG 2 cut(s) 171, 763
Bme18I GGWCC 1 cut(s) 622
BmgT120I GGNCC 5 cut(s) 209, 498, 499, 520, 622
BmiI GGNNCC 4 cut(s) 189, 500, 501, 594
BmrFI CCNGG 2 cut(s) 171, 763
BmrI ACTGGG 2 cut(s) 145, 349
BmuI ACTGGG 2 cut(s) 145, 349
BoxI GACNNNNGTC 1 cut(s) 797
BpiI GAAGAC 1 cut(s) 48
BsaJI CCNNGG 3 cut(s) 183, 570, 762
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 367, 511
Bse1I ACTGG 4 cut(s) 140, 355, 625, 814
Bse3DI GCAATG 1 cut(s) 592
BseBI CCWGG 2 cut(s) 171, 763
BseDI CCNNGG 3 cut(s) 183, 570, 762
BseGI GGATG 3 cut(s) 500, 523, 855
BseLI CCNNNNNNNGG 3 cut(s) 217, 367, 511
BseMI GCAATG 1 cut(s) 592
BseMII CTCAG 2 cut(s) 92, 165
BseNI ACTGG 4 cut(s) 140, 355, 625, 814
BseSI GKGCMC 1 cut(s) 502
BseYI CCCAGC 1 cut(s) 504
BshFI GGCC 8 cut(s) 210, 259, 397, 418, 500, 521, 610, 813
BshNI GGYRCC 1 cut(s) 187
BslI CCNNNNNNNGG 3 cut(s) 217, 367, 511
BsmI GAATGC 2 cut(s) 155, 176
BsnI GGCC 8 cut(s) 210, 259, 397, 418, 500, 521, 610, 813
Bsp120I GGGCCC 1 cut(s) 498
Bsp1286I GDGCHC 1 cut(s) 502
Bsp143I GATC 4 cut(s) 3, 289, 346, 696
BspACI CCGC 3 cut(s) 212, 620, 810
BspANI GGCC 8 cut(s) 210, 259, 397, 418, 500, 521, 610, 813
BspCNI CTCAG 2 cut(s) 91, 164
BspLI GGNNCC 4 cut(s) 189, 500, 501, 594
BspPI GGATC 1 cut(s) 704
BspT107I GGYRCC 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 592
BsrI ACTGG 4 cut(s) 140, 355, 625, 814
BssECI CCNNGG 3 cut(s) 183, 570, 762
BssMI GATC 4 cut(s) 3, 289, 346, 696
BssT1I CCWWGG 2 cut(s) 183, 570
Bst2UI CCWGG 2 cut(s) 171, 763
Bst4CI ACNGT 2 cut(s) 121, 387
BstC8I GCNNGC 3 cut(s) 212, 223, 538
BstDEI CTNAG 8 cut(s) 10, 46, 78, 104, 151, 277, 545, 581
BstF5I GGATG 3 cut(s) 500, 523, 855
BstKTI GATC 4 cut(s) 6, 292, 349, 699
BstMBI GATC 4 cut(s) 3, 289, 346, 696
BstMWI GCNNNNNNNGC 1 cut(s) 546
BstNI CCWGG 2 cut(s) 171, 763
BstNSI RCATGY 1 cut(s) 25
BstPAI GACNNNNGTC 1 cut(s) 797
BstSCI CCNGG 2 cut(s) 169, 761
BstSLI GKGCMC 1 cut(s) 502
BstV2I GAAGAC 1 cut(s) 48
BstXI CCANNNNNNTGG 1 cut(s) 405
BsuRI GGCC 8 cut(s) 210, 259, 397, 418, 500, 521, 610, 813
BtgZI GCGATG 1 cut(s) 759
BtsCI GGATG 3 cut(s) 500, 523, 855
Cac8I GCNNGC 3 cut(s) 212, 223, 538
Cfr13I GGNCC 5 cut(s) 209, 498, 499, 520, 622
CseI GACGC 1 cut(s) 787
Csp6I GTAC 1 cut(s) 435
CviAII CATG 2 cut(s) 22, 31
CviQI GTAC 1 cut(s) 435
DdeI CTNAG 8 cut(s) 10, 46, 78, 104, 151, 277, 545, 581
DpnI GATC 4 cut(s) 5, 291, 348, 698
DpnII GATC 4 cut(s) 3, 289, 346, 696
EaeI YGGCCR 3 cut(s) 257, 608, 811
Eco130I CCWWGG 2 cut(s) 183, 570
Eco24I GRGCYC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 622
Eco57I CTGAAG 1 cut(s) 60
EcoO109I RGGNCCY 1 cut(s) 499
EcoRI GAATTC 1 cut(s) 562
EcoRII CCWGG 2 cut(s) 169, 761
EcoT14I CCWWGG 2 cut(s) 183, 570
EcoT38I GRGCYC 1 cut(s) 502
ErhI CCWWGG 2 cut(s) 183, 570
FaeI CATG 2 cut(s) 25, 34
FalI AAGNNNNNCTT 2 cut(s) 424, 456
FatI CATG 2 cut(s) 21, 30
FauI CCCGC 1 cut(s) 219
FbaI TGATCA 3 cut(s) 3, 289, 346
Fnu4HI GCNGC 1 cut(s) 811
FokI GGATG 2 cut(s) 507, 510
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 1 cut(s) 811
FspBI CTAG 2 cut(s) 164, 795
GluI GCNGC 1 cut(s) 811
GsaI CCCAGC 1 cut(s) 508
HaeIII GGCC 8 cut(s) 210, 259, 397, 418, 500, 521, 610, 813
HgaI GACGC 1 cut(s) 787
Hin1II CATG 2 cut(s) 25, 34
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 3 cut(s) 100, 239, 266
HpaI GTTAAC 1 cut(s) 57
HphI GGTGA 2 cut(s) 77, 172
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 3 cut(s) 81, 430, 758
Hpy188III TCNNGA 2 cut(s) 380, 632
Hpy8I GTNNAC 1 cut(s) 57
HpyAV CCTTC 5 cut(s) 443, 505, 537, 569, 655
HpyCH4III ACNGT 2 cut(s) 121, 387
HpyCH4V TGCA 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 546
HpyF3I CTNAG 8 cut(s) 10, 46, 78, 104, 151, 277, 545, 581
Hsp92II CATG 2 cut(s) 25, 34
Ksp22I TGATCA 3 cut(s) 3, 289, 346
KspAI GTTAAC 1 cut(s) 57
Kzo9I GATC 4 cut(s) 3, 289, 346, 696
LmnI GCTCC 2 cut(s) 173, 330
MaeI CTAG 2 cut(s) 164, 795
MaeIII GTNAC 3 cut(s) 65, 107, 641
MalI GATC 4 cut(s) 5, 291, 348, 698
MboI GATC 4 cut(s) 3, 289, 346, 696
MboII GAAGA 2 cut(s) 53, 470
MfeI CAATTG 2 cut(s) 95, 531
MhlI GDGCHC 1 cut(s) 502
MlsI TGGCCA 2 cut(s) 259, 610
MluNI TGGCCA 2 cut(s) 259, 610
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 539
MnlI CCTC 2 cut(s) 309, 408
Mox20I TGGCCA 2 cut(s) 259, 610
MroXI GAANNNNTTC 1 cut(s) 735
MscI TGGCCA 2 cut(s) 259, 610
MseI TTAA 3 cut(s) 56, 717, 831
MslI CAYNNNNRTG 1 cut(s) 403
Msp20I TGGCCA 2 cut(s) 259, 610
MspA1I CMGCKG 1 cut(s) 245
MspR9I CCNGG 2 cut(s) 171, 763
MunI CAATTG 2 cut(s) 95, 531
Mva1269I GAATGC 2 cut(s) 155, 176
MvaI CCWGG 2 cut(s) 171, 763
MwoI GCNNNNNNNGC 1 cut(s) 546
NdeII GATC 4 cut(s) 3, 289, 346, 696
NlaIII CATG 2 cut(s) 25, 34
NlaIV GGNNCC 4 cut(s) 189, 500, 501, 594
NmuCI GTSAC 1 cut(s) 65
NspI RCATGY 1 cut(s) 25
PctI GAATGC 2 cut(s) 155, 176
PdmI GAANNNNTTC 1 cut(s) 735
PfeI GAWTC 2 cut(s) 100, 239
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 1 cut(s) 812
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PshAI GACNNNNGTC 1 cut(s) 797
Psp6I CCWGG 2 cut(s) 169, 761
PspFI CCCAGC 1 cut(s) 504
PspGI CCWGG 2 cut(s) 169, 761
PspN4I GGNNCC 4 cut(s) 189, 500, 501, 594
PspOMI GGGCCC 1 cut(s) 498
PspPI GGNCC 5 cut(s) 209, 498, 499, 520, 622
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
RseI CAYNNNNRTG 1 cut(s) 403
SaqAI TTAA 3 cut(s) 56, 717, 831
SatI GCNGC 1 cut(s) 811
Sau3AI GATC 4 cut(s) 3, 289, 346, 696
Sau96I GGNCC 5 cut(s) 209, 498, 499, 520, 622
ScaI AGTACT 1 cut(s) 436
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 2 cut(s) 171, 763
SduI GDGCHC 1 cut(s) 502
SinI GGWCC 1 cut(s) 622
SmiMI CAYNNNNRTG 1 cut(s) 403
SsiI CCGC 3 cut(s) 212, 620, 810
SspMI CTAG 2 cut(s) 164, 795
StyD4I CCNGG 2 cut(s) 169, 761
StyI CCWWGG 2 cut(s) 183, 570
TaaI ACNGT 2 cut(s) 121, 387
TaqI TCGA 1 cut(s) 159
TatI WGTACW 1 cut(s) 434
TauI GCSGC 1 cut(s) 813
TfiI GAWTC 2 cut(s) 100, 239
Tru1I TTAA 3 cut(s) 56, 717, 831
Tru9I TTAA 3 cut(s) 56, 717, 831
TseFI GTSAC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 4 cut(s) 47, 471, 762, 829
Van91I CCANNNNNTGG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 622
XapI RAATTY 4 cut(s) 562, 751, 773, 835
XceI RCATGY 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 735
XspI CTAG 2 cut(s) 164, 795
ZrmI AGTACT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.