RchiOBHm_Chr2g0165981

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000438
Physical Location & Seq
Forward (+)
80826125 .. 80826508
384 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53390

Sequence Viewer

Length: 384 bp
ATGAAAACTGAAGACTTAGTGTGGTTAACCATTGGTGACAAAACCACTCAGAAAATTATATTCCAAGTTATTCTAAGTAACAACAAGACTGTGAAATTGGCTGACTGGGTTGTATGCAACTCAACATTCGACCTAGAACCAGGAGCATTCACCTTGGCACCACAGATTTTACCAATAGGCCCGCTTTTGGCAAGCAATCACCTTGATGATTCAGCTGGAAACTTCTGGCCACCAAAATCAACTTGCTTAGAATGGCTTGATCAACAACCTCTTTGTTCAGTCGTCTATGTTGCTTTTGGAAGCTTCACAATTTTTGATCAAACCCAGTTCCAAGAATTGGCTTTGGCTCTTGAACTGTCCATAGGCCATTCCTATGGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

127

Amino Acids

14.09

Weight (kDa)

4.43

Isoelectric Point (pI)

26.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 157
AccB7I CCANNNNNTGG 1 cut(s) 337
AciI CCGC 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 30
AfiI CCNNNNNNNGG 2 cut(s) 187, 337
AgsI TTSAA 1 cut(s) 353
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 2 cut(s) 215, 303
AluI AGCT 2 cut(s) 215, 303
AoxI GGCC 3 cut(s) 178, 227, 364
AspS9I GGNCC 1 cut(s) 179
AsuHPI GGTGA 3 cut(s) 47, 142, 191
BalI TGGCCA 1 cut(s) 229
BanI GGYRCC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 141
BclI TGATCA 2 cut(s) 259, 316
BfaI CTAG 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 141
BmrI ACTGGG 2 cut(s) 115, 319
BmuI ACTGGG 2 cut(s) 115, 319
BpiI GAAGAC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 337
Bse1I ACTGG 2 cut(s) 110, 325
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 187, 337
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 2 cut(s) 110, 325
BshFI GGCC 3 cut(s) 180, 229, 366
BshNI GGYRCC 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 187, 337
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 3 cut(s) 180, 229, 366
Bsp143I GATC 2 cut(s) 259, 316
BspACI CCGC 1 cut(s) 182
BspANI GGCC 3 cut(s) 180, 229, 366
BspCNI CTCAG 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 157
BsrI ACTGG 2 cut(s) 110, 325
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 2 cut(s) 259, 316
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 91, 357
BstC8I GCNNGC 2 cut(s) 182, 193
BstDEI CTNAG 4 cut(s) 16, 48, 74, 247
BstKTI GATC 2 cut(s) 262, 319
BstMBI GATC 2 cut(s) 259, 316
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 18
BstXI CCANNNNNNTGG 1 cut(s) 374
BsuRI GGCC 3 cut(s) 180, 229, 366
Cac8I GCNNGC 2 cut(s) 182, 193
Cfr13I GGNCC 1 cut(s) 179
CviJI RGCY 9 cut(s) 101, 180, 215, 229, 256, 303, 341, 347, 366
CviKI_1 RGCY 9 cut(s) 101, 180, 215, 229, 256, 303, 341, 347, 366
DdeI CTNAG 4 cut(s) 16, 48, 74, 247
DpnI GATC 2 cut(s) 261, 318
DpnII GATC 2 cut(s) 259, 316
EaeI YGGCCR 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaiI YATR 5 cut(s) 59, 115, 288, 362, 375
FauI CCCGC 1 cut(s) 189
FbaI TGATCA 2 cut(s) 259, 316
FspBI CTAG 1 cut(s) 134
HaeIII GGCC 3 cut(s) 180, 229, 366
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HindIII AAGCTT 1 cut(s) 301
HinfI GANTC 1 cut(s) 209
HpaI GTTAAC 1 cut(s) 27
HphI GGTGA 3 cut(s) 47, 142, 191
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 1 cut(s) 350
Hpy8I GTNNAC 1 cut(s) 27
HpyCH4III ACNGT 2 cut(s) 91, 357
HpyCH4V TGCA 1 cut(s) 117
HpyF3I CTNAG 4 cut(s) 16, 48, 74, 247
Ksp22I TGATCA 2 cut(s) 259, 316
KspAI GTTAAC 1 cut(s) 27
Kzo9I GATC 2 cut(s) 259, 316
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 6 cut(s) 91, 126, 153, 201, 211, 338
MaeI CTAG 1 cut(s) 134
MaeIII GTNAC 2 cut(s) 35, 77
MalI GATC 2 cut(s) 261, 318
MboI GATC 2 cut(s) 259, 316
MboII GAAGA 1 cut(s) 23
MlsI TGGCCA 1 cut(s) 229
MluCI AATT 4 cut(s) 54, 95, 309, 335
MluNI TGGCCA 1 cut(s) 229
MnlI CCTC 1 cut(s) 279
Mox20I TGGCCA 1 cut(s) 229
MscI TGGCCA 1 cut(s) 229
MseI TTAA 1 cut(s) 26
MslI CAYNNNNRTG 2 cut(s) 204, 372
Msp20I TGGCCA 1 cut(s) 229
MspA1I CMGCKG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 141
Mva1269I GAATGC 1 cut(s) 146
MvaI CCWGG 1 cut(s) 141
NdeII GATC 2 cut(s) 259, 316
NlaIV GGNNCC 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 35
PctI GAATGC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 209
PflMI CCANNNNNTGG 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 215
RseI CAYNNNNRTG 2 cut(s) 204, 372
SaqAI TTAA 1 cut(s) 26
Sau3AI GATC 2 cut(s) 259, 316
Sau96I GGNCC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 141
SetI ASST 6 cut(s) 135, 155, 204, 217, 271, 305
SmiMI CAYNNNNRTG 2 cut(s) 204, 372
Sse9I AATT 4 cut(s) 54, 95, 309, 335
SsiI CCGC 1 cut(s) 182
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 139
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 91, 357
TaqI TCGA 1 cut(s) 129
TasI AATT 4 cut(s) 54, 95, 309, 335
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseFI GTSAC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 337
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.