Rh2BG597400

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000438
Physical Location & Seq
Forward (+)
81935609 .. 81936172
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG597400.1

Sequence Viewer

Length: 564 bp
ATGAGCAAGCCACATATTATAGCTATTCCTTTCCCGGCACAAGGCCATGTAATGCCCTTAATGGAGTTCTCGCAGTGCTTAGCACGTCATGGCTTCAAAGTCACATTTGTGAACACAGAACATATTCACAAGCAAATTGTGAATGCAATATCCGATGAAAGTTATATAAGGCATGATCATGTTCATCTGGTTTCAATTCCAGATGGGTTAGAATCCCAAGAGGAAAGGAATGGGCCACGGCTGCTATCCGAAGCAATACAAGCAGTCATGCACCAGAATTTGGAGGATCTCATAGAGAAGATCAACAAAGAGGAAGGTGCAAAAATCACTTGTCTCATAGCTGATGAGAGTTGTGGGTGGGCTCTGGAAGTGGCACAAAAATTGAAGATTGCGAGGGTGGTTGCCTTTTGGCCTGCAGCAGCTGCAACTTTGGTATTGAACTTTTGTATCCCAAAATTAATTCATGAAGGAATCATTGAATATGATGGTAAGTTATTCATACTTGTGAACATCATGCAACCCTGCTATGCATGTCATTTATTAATTAGTACAGCAAGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

187

Amino Acids

20.88

Weight (kDa)

5.97

Isoelectric Point (pI)

55.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 6 - 146 1.2e-08 Glycosyltransferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 280
AclWI GGATC 1 cut(s) 294
AcsI RAATTY 1 cut(s) 277
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 2 cut(s) 41, 280
AgsI TTSAA 5 cut(s) 97, 195, 385, 439, 479
AjiI CACGTC 1 cut(s) 86
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 3 cut(s) 23, 341, 422
AluI AGCT 3 cut(s) 23, 341, 422
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 1 cut(s) 294
AlwNI CAGNNNCTG 1 cut(s) 422
AoxI GGCC 3 cut(s) 43, 233, 410
ApeKI GCWGC 4 cut(s) 241, 416, 419, 422
ApoI RAATTY 1 cut(s) 277
AseI ATTAAT 2 cut(s) 458, 542
Asp700I GAANNNNTTC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 35
BaeI ACNNNNGTAYC 2 cut(s) 430, 463
BanII GRGCYC 1 cut(s) 364
BbvI GCAGC 4 cut(s) 228, 409, 428, 431
BccI CCATC 2 cut(s) 197, 479
BceAI ACGGC 1 cut(s) 254
BciVI GTATCC 1 cut(s) 458
BclI TGATCA 1 cut(s) 175
BcnI CCSGG 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 338
BfmI CTRYAG 1 cut(s) 414
BfuI GTATCC 1 cut(s) 458
BisI GCNGC 4 cut(s) 242, 417, 420, 423
BlpI GCTNAGC 1 cut(s) 79
BlsI GCNGC 4 cut(s) 243, 418, 421, 424
Bme1390I CCNGG 1 cut(s) 35
BmgBI CACGTC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 35
Bpu1102I GCTNAGC 1 cut(s) 79
BpuMI CCSGG 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 236
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 280
BseDI CCNNGG 1 cut(s) 236
BseLI CCNNNNNNNGG 2 cut(s) 41, 280
BseXI GCAGC 4 cut(s) 228, 409, 428, 431
BshFI GGCC 3 cut(s) 45, 235, 412
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 41, 280
BsmAI GTCTC 1 cut(s) 338
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 3 cut(s) 45, 235, 412
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 3 cut(s) 175, 286, 300
Bsp1720I GCTNAGC 1 cut(s) 79
BspANI GGCC 3 cut(s) 45, 235, 412
BspHI TCATGA 1 cut(s) 463
BspMAI CTGCAG 1 cut(s) 418
BspPI GGATC 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 3 cut(s) 175, 286, 300
BstAPI GCANNNNNTGC 1 cut(s) 422
BstC8I GCNNGC 2 cut(s) 8, 414
BstDEI CTNAG 1 cut(s) 79
BstDSI CCRYGG 1 cut(s) 236
BstKTI GATC 3 cut(s) 178, 289, 303
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 3 cut(s) 175, 286, 300
BstMWI GCNNNNNNNGC 3 cut(s) 241, 260, 422
BstNSI RCATGY 1 cut(s) 534
BstSCI CCNGG 1 cut(s) 33
BstSFI CTRYAG 1 cut(s) 414
BstV1I GCAGC 4 cut(s) 228, 409, 428, 431
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BsuI GTATCC 1 cut(s) 458
BsuRI GGCC 3 cut(s) 45, 235, 412
BtgI CCRYGG 1 cut(s) 236
BtrI CACGTC 1 cut(s) 86
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 2 cut(s) 8, 414
CaiI CAGNNNCTG 1 cut(s) 422
CciI TCATGA 1 cut(s) 463
Cfr13I GGNCC 1 cut(s) 233
Csp6I GTAC 1 cut(s) 549
CviAII CATG 8 cut(s) 47, 89, 173, 179, 268, 464, 514, 531
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 1 cut(s) 79
DpnI GATC 3 cut(s) 177, 288, 302
DpnII GATC 3 cut(s) 175, 286, 300
Eco24I GRGCYC 1 cut(s) 364
EcoT22I ATGCAT 1 cut(s) 532
EcoT38I GRGCYC 1 cut(s) 364
FaeI CATG 8 cut(s) 50, 92, 176, 182, 271, 467, 517, 534
FatI CATG 8 cut(s) 46, 88, 172, 178, 267, 463, 513, 530
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 4 cut(s) 242, 417, 420, 423
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 4 cut(s) 242, 417, 420, 423
GluI GCNGC 4 cut(s) 242, 417, 420, 423
HaeIII GGCC 3 cut(s) 45, 235, 412
HapII CCGG 1 cut(s) 35
Hin1II CATG 8 cut(s) 50, 92, 176, 182, 271, 467, 517, 534
HinfI GANTC 2 cut(s) 212, 471
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 2 cut(s) 112, 508
Hpy188I TCNGA 2 cut(s) 154, 250
Hpy188III TCNNGA 3 cut(s) 200, 365, 464
Hpy8I GTNNAC 2 cut(s) 112, 508
HpyAV CCTTC 2 cut(s) 308, 461
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 7 cut(s) 146, 271, 320, 416, 425, 517, 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 241, 260, 422
HpyF3I CTNAG 1 cut(s) 79
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 8 cut(s) 50, 92, 176, 182, 271, 467, 517, 534
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 3 cut(s) 175, 286, 300
LpnPI CCDG 7 cut(s) 48, 173, 213, 287, 350, 426, 535
Lsp1109I GCAGC 4 cut(s) 228, 409, 428, 431
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 100
MalI GATC 3 cut(s) 177, 288, 302
MboI GATC 3 cut(s) 175, 286, 300
MboII GAAGA 2 cut(s) 310, 397
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 7 cut(s) 135, 195, 277, 380, 455, 459, 543
MnlI CCTC 4 cut(s) 214, 277, 304, 387
Mph1103I ATGCAT 1 cut(s) 532
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 4 cut(s) 59, 458, 542, 562
MslI CAYNNNNRTG 3 cut(s) 107, 177, 503
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 35
Mva1269I GAATGC 1 cut(s) 148
MwoI GCNNNNNNNGC 3 cut(s) 241, 260, 422
NciI CCSGG 1 cut(s) 35
NdeII GATC 3 cut(s) 175, 286, 300
NlaIII CATG 8 cut(s) 50, 92, 176, 182, 271, 467, 517, 534
NmuCI GTSAC 1 cut(s) 100
NsiI ATGCAT 1 cut(s) 532
NspI RCATGY 1 cut(s) 534
OliI CACNNNNGTG 1 cut(s) 107
PagI TCATGA 1 cut(s) 463
PctI GAATGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 2 cut(s) 212, 471
PflMI CCANNNNNTGG 1 cut(s) 280
PkrI GCNGC 4 cut(s) 243, 418, 421, 424
PshBI ATTAAT 2 cut(s) 458, 542
PspPI GGNCC 1 cut(s) 233
PsrI GAACNNNNNNTAC 1 cut(s) 541
PstI CTGCAG 1 cut(s) 418
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
RseI CAYNNNNRTG 3 cut(s) 107, 177, 503
SaqAI TTAA 4 cut(s) 59, 458, 542, 562
SatI GCNGC 4 cut(s) 242, 417, 420, 423
Sau3AI GATC 3 cut(s) 175, 286, 300
Sau96I GGNCC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 364
SetI ASST 5 cut(s) 25, 88, 319, 343, 424
SfcI CTRYAG 1 cut(s) 414
SmiMI CAYNNNNRTG 3 cut(s) 107, 177, 503
Sse9I AATT 7 cut(s) 135, 195, 277, 380, 455, 459, 543
StyD4I CCNGG 1 cut(s) 33
TaiI ACGT 1 cut(s) 88
TasI AATT 7 cut(s) 135, 195, 277, 380, 455, 459, 543
TatI WGTACW 1 cut(s) 548
TfiI GAWTC 2 cut(s) 212, 471
Tru1I TTAA 4 cut(s) 59, 458, 542, 562
Tru9I TTAA 4 cut(s) 59, 458, 542, 562
TscAI CASTG 1 cut(s) 80
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 4 cut(s) 241, 416, 419, 422
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 5 cut(s) 171, 173, 452, 480, 487
TspRI CASTG 1 cut(s) 80
Van91I CCANNNNNTGG 1 cut(s) 280
VspI ATTAAT 2 cut(s) 458, 542
XapI RAATTY 1 cut(s) 277
XceI RCATGY 1 cut(s) 534
XmnI GAANNNNTTC 1 cut(s) 123
Zsp2I ATGCAT 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.