Rh2BG597300

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000438
Physical Location & Seq
Forward (+)
81929451 .. 81931417
1967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG597300.1

Sequence Viewer

Length: 768 bp
ATGTGCAAGCCACATATTATAGCCATTCCTTACCCAGCTCAAGGCCATGTAATTCCCTTGATGGAGTTATCACAGTGCTTAGTGAATGAAGGCTTCAAAGTCACATTTGTGAACACAGATTTTAACCACAAGCGAGTCATGAATTCCTTGGCAGCTGAAACTCATAAAAGGGATGATCAGATTTGTCTGGTTTCAATTCCGGATGGGTTAGAACCATGGGAGGACAGAAATGAGTTAGGGCAGCTATGTGAAGCAATACTTAGAGTCATGCCTGGGAAGTTGGAGGAGCTCATAGAGAAGATCAAGGAAGAAGAAGGTGATAAAGTTGCCTGTATCATTGCTGATGAGAGTAACGGATGGGCTCTGGAAGTAGCAGAGAAAATGCAAATAAAGAAAGTTGCCTTCTGGCCTGCGTCAGCTGCACTTTTGGCATTGGAGTTTTGTATCCCAAAATTAATTCAAGAAGGAATCATTGATGATGATGGTCTAAGCAATGGGGTTCCTTTCTTGTGTTGGCCATACTTCGCGGACCAGTTCCTTGATGAGAGTTACATTTGTAATGTTTGGAAGGTGGGATTGAAGTTTGATAAGAATGAGAGTGGGATTATTCCTAAAGGAGAAATTAACAACAAGGTGGAACAACTTCTTGGTGACGAAAATTTCAGAGCCAGGGCTTCAAAACTCAAGGAAATGGCCATGACTAGTGTCAAAGAAGGTGGCCGGTCTAACAAGATATTTAAGAATTTCATTGAATGGATGAAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

255

Amino Acids

28.83

Weight (kDa)

5.06

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 527
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 1 cut(s) 527
AcoI YGGCCR 3 cut(s) 515, 693, 718
AcsI RAATTY 3 cut(s) 142, 658, 742
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 6 cut(s) 97, 195, 461, 580, 678, 752
AhlI ACTAGT 1 cut(s) 701
AjnI CCWGG 2 cut(s) 271, 668
AjuI GAANNNNNNNTTGG 2 cut(s) 630, 662
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 5 cut(s) 38, 155, 244, 289, 419
AluI AGCT 5 cut(s) 38, 155, 244, 289, 419
Alw21I GWGCWC 1 cut(s) 291
Aor13HI TCCGGA 1 cut(s) 199
AoxI GGCC 5 cut(s) 43, 407, 515, 693, 718
ApeKI GCWGC 3 cut(s) 152, 241, 419
ApoI RAATTY 3 cut(s) 142, 658, 742
AseI ATTAAT 1 cut(s) 455
Asp700I GAANNNNTTC 1 cut(s) 642
AspS9I GGNCC 1 cut(s) 529
AsuHPI GGTGA 2 cut(s) 329, 662
AvaII GGWCC 1 cut(s) 529
BalI TGGCCA 2 cut(s) 517, 695
BanII GRGCYC 2 cut(s) 291, 364
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 3 cut(s) 164, 253, 406
BccI CCATC 4 cut(s) 55, 197, 351, 476
BciT130I CCWGG 2 cut(s) 273, 670
BciVI GTATCC 1 cut(s) 455
BclI TGATCA 1 cut(s) 175
BcuI ACTAGT 1 cut(s) 701
BfaI CTAG 1 cut(s) 702
BfuI GTATCC 1 cut(s) 455
BisI GCNGC 3 cut(s) 153, 242, 420
BlsI GCNGC 3 cut(s) 154, 243, 421
Bme1390I CCNGG 2 cut(s) 273, 670
Bme18I GGWCC 1 cut(s) 529
BmgT120I GGNCC 1 cut(s) 529
BmiI GGNNCC 1 cut(s) 501
BmrFI CCNGG 2 cut(s) 273, 670
BoxI GACNNNNGTC 1 cut(s) 704
BpuEI CTTGAG 2 cut(s) 24, 668
BsaJI CCNNGG 4 cut(s) 147, 215, 272, 669
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse118I RCCGGY 1 cut(s) 720
Bse1I ACTGG 1 cut(s) 532
Bse3DI GCAATG 2 cut(s) 336, 499
BseAI TCCGGA 1 cut(s) 199
BseBI CCWGG 2 cut(s) 273, 670
BseDI CCNNGG 4 cut(s) 147, 215, 272, 669
BseGI GGATG 4 cut(s) 178, 208, 362, 762
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 2 cut(s) 336, 499
BseNI ACTGG 1 cut(s) 532
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 3 cut(s) 164, 253, 406
BseYI CCCAGC 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 405
Bsh1236I CGCG 1 cut(s) 527
BshFI GGCC 5 cut(s) 45, 409, 517, 695, 720
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 2 cut(s) 200, 721
BslI CCNNNNNNNGG 1 cut(s) 41
BsnI GGCC 5 cut(s) 45, 409, 517, 695, 720
Bsp1286I GDGCHC 2 cut(s) 291, 364
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 2 cut(s) 175, 300
Bsp19I CCATGG 1 cut(s) 215
BspACI CCGC 1 cut(s) 527
BspANI GGCC 5 cut(s) 45, 409, 517, 695, 720
BspEI TCCGGA 1 cut(s) 199
BspFNI CGCG 1 cut(s) 527
BspHI TCATGA 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 501
BsrDI GCAATG 2 cut(s) 336, 499
BsrFI RCCGGY 1 cut(s) 720
BsrI ACTGG 1 cut(s) 532
BssAI RCCGGY 1 cut(s) 720
BssECI CCNNGG 4 cut(s) 147, 215, 272, 669
BssMI GATC 2 cut(s) 175, 300
BssT1I CCWWGG 2 cut(s) 147, 215
Bst2UI CCWGG 2 cut(s) 273, 670
Bst4CI ACNGT 1 cut(s) 75
BstC8I GCNNGC 2 cut(s) 8, 411
BstDEI CTNAG 3 cut(s) 79, 260, 488
BstDSI CCRYGG 1 cut(s) 215
BstF5I GGATG 4 cut(s) 178, 208, 362, 762
BstFNI CGCG 1 cut(s) 527
BstKTI GATC 2 cut(s) 178, 303
BstMBI GATC 2 cut(s) 175, 300
BstMWI GCNNNNNNNGC 2 cut(s) 419, 428
BstNI CCWGG 2 cut(s) 273, 670
BstPAI GACNNNNGTC 1 cut(s) 704
BstSCI CCNGG 2 cut(s) 271, 668
BstUI CGCG 1 cut(s) 527
BstV1I GCAGC 3 cut(s) 164, 253, 406
BsuI GTATCC 1 cut(s) 455
BsuRI GGCC 5 cut(s) 45, 409, 517, 695, 720
BtgI CCRYGG 1 cut(s) 215
BtsCI GGATG 4 cut(s) 178, 208, 362, 762
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 2 cut(s) 8, 411
CciI TCATGA 1 cut(s) 138
Cfr10I RCCGGY 1 cut(s) 720
Cfr13I GGNCC 1 cut(s) 529
CseI GACGC 1 cut(s) 402
CspCI CAANNNNNGTGG 2 cut(s) 697, 732
CviAII CATG 5 cut(s) 47, 139, 216, 268, 697
DdeI CTNAG 3 cut(s) 79, 260, 488
DpnI GATC 2 cut(s) 177, 302
DpnII GATC 2 cut(s) 175, 300
EaeI YGGCCR 3 cut(s) 515, 693, 718
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 2 cut(s) 147, 215
Eco24I GRGCYC 2 cut(s) 291, 364
Eco47I GGWCC 1 cut(s) 529
Eco53kI GAGCTC 1 cut(s) 289
EcoICRI GAGCTC 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 142
EcoRII CCWGG 2 cut(s) 271, 668
EcoT14I CCWWGG 2 cut(s) 147, 215
EcoT38I GRGCYC 2 cut(s) 291, 364
ErhI CCWWGG 2 cut(s) 147, 215
FaeI CATG 5 cut(s) 50, 142, 219, 271, 700
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FatI CATG 5 cut(s) 46, 138, 215, 267, 696
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 3 cut(s) 153, 242, 420
FokI GGATG 3 cut(s) 185, 215, 369
FriOI GRGCYC 2 cut(s) 291, 364
Fsp4HI GCNGC 3 cut(s) 153, 242, 420
FspBI CTAG 1 cut(s) 702
GluI GCNGC 3 cut(s) 153, 242, 420
GsaI CCCAGC 1 cut(s) 38
HaeIII GGCC 5 cut(s) 45, 409, 517, 695, 720
HapII CCGG 2 cut(s) 200, 721
HgaI GACGC 1 cut(s) 402
Hin1II CATG 5 cut(s) 50, 142, 219, 271, 700
HinfI GANTC 3 cut(s) 135, 264, 468
HpaII CCGG 2 cut(s) 200, 721
HphI GGTGA 2 cut(s) 329, 662
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 2 cut(s) 180, 665
Hpy188III TCNNGA 4 cut(s) 139, 200, 365, 461
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 6 cut(s) 83, 308, 412, 458, 562, 707
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4V TGCA 3 cut(s) 6, 385, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 428
HpyF3I CTNAG 3 cut(s) 79, 260, 488
Hsp92II CATG 5 cut(s) 50, 142, 219, 271, 700
Kpn2I TCCGGA 1 cut(s) 199
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 2 cut(s) 175, 300
LmnI GCTCC 1 cut(s) 286
Lsp1109I GCAGC 3 cut(s) 164, 253, 406
MaeI CTAG 1 cut(s) 702
MaeIII GTNAC 4 cut(s) 100, 350, 548, 650
MalI GATC 2 cut(s) 177, 302
MboI GATC 2 cut(s) 175, 300
MboII GAAGA 3 cut(s) 310, 320, 323
MhlI GDGCHC 2 cut(s) 291, 364
MlsI TGGCCA 2 cut(s) 517, 695
MluCI AATT 8 cut(s) 51, 142, 195, 452, 456, 621, 658, 742
MluNI TGGCCA 2 cut(s) 517, 695
MlyI GAGTC 2 cut(s) 144, 273
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 2 cut(s) 214, 277
Mox20I TGGCCA 2 cut(s) 517, 695
MroI TCCGGA 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 642
MscI TGGCCA 2 cut(s) 517, 695
MseI TTAA 4 cut(s) 123, 455, 624, 738
MslI CAYNNNNRTG 1 cut(s) 107
Msp20I TGGCCA 2 cut(s) 517, 695
MspA1I CMGCKG 2 cut(s) 155, 419
MspI CCGG 2 cut(s) 200, 721
MspR9I CCNGG 2 cut(s) 273, 670
MvaI CCWGG 2 cut(s) 273, 670
MvnI CGCG 1 cut(s) 527
MwoI GCNNNNNNNGC 2 cut(s) 419, 428
NcoI CCATGG 1 cut(s) 215
NdeII GATC 2 cut(s) 175, 300
NlaIII CATG 5 cut(s) 50, 142, 219, 271, 700
NlaIV GGNNCC 1 cut(s) 501
NmuCI GTSAC 2 cut(s) 100, 650
OliI CACNNNNGTG 1 cut(s) 107
PagI TCATGA 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 642
PfeI GAWTC 1 cut(s) 468
PkrI GCNGC 3 cut(s) 154, 243, 421
PleI GAGTC 2 cut(s) 143, 272
PpsI GAGTC 2 cut(s) 143, 272
PshAI GACNNNNGTC 1 cut(s) 704
PshBI ATTAAT 1 cut(s) 455
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 2 cut(s) 271, 668
PspFI CCCAGC 1 cut(s) 34
PspGI CCWGG 2 cut(s) 271, 668
PspN4I GGNNCC 1 cut(s) 501
PspPI GGNCC 1 cut(s) 529
PvuII CAGCTG 2 cut(s) 155, 419
RseI CAYNNNNRTG 1 cut(s) 107
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 4 cut(s) 123, 455, 624, 738
SatI GCNGC 3 cut(s) 153, 242, 420
Sau3AI GATC 2 cut(s) 175, 300
Sau96I GGNCC 1 cut(s) 529
SchI GAGTC 2 cut(s) 144, 273
ScrFI CCNGG 2 cut(s) 273, 670
SduI GDGCHC 2 cut(s) 291, 364
SetI ASST 9 cut(s) 40, 157, 246, 291, 319, 421, 573, 636, 718
SinI GGWCC 1 cut(s) 529
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 2 cut(s) 39, 683
SmoI CTYRAG 2 cut(s) 39, 683
SpeI ACTAGT 1 cut(s) 701
Sse9I AATT 8 cut(s) 51, 142, 195, 452, 456, 621, 658, 742
SsiI CCGC 1 cut(s) 527
SspMI CTAG 1 cut(s) 702
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 271, 668
StyI CCWWGG 2 cut(s) 147, 215
TaaI ACNGT 1 cut(s) 75
TasI AATT 8 cut(s) 51, 142, 195, 452, 456, 621, 658, 742
TfiI GAWTC 1 cut(s) 468
Tru1I TTAA 4 cut(s) 123, 455, 624, 738
Tru9I TTAA 4 cut(s) 123, 455, 624, 738
TscAI CASTG 1 cut(s) 80
TseFI GTSAC 2 cut(s) 100, 650
TseI GCWGC 3 cut(s) 152, 241, 419
Tsp45I GTSAC 2 cut(s) 100, 650
TspDTI ATGAA 3 cut(s) 102, 155, 736
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 529
VspI ATTAAT 1 cut(s) 455
XapI RAATTY 3 cut(s) 142, 658, 742
XmnI GAANNNNTTC 1 cut(s) 642
XspI CTAG 1 cut(s) 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.