RchiOBHm_Chr2g0166031

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000438
Physical Location & Seq
Forward (+)
80843710 .. 80843967
258 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53395

Sequence Viewer

Length: 258 bp
ATGGACCCCACAACAGAATGTTCTTTCCCACATCCTTCGGTTGCTTGCTTCCTAAGTCACTGTGGGTGGAACTCTACAATGGAAGGTGTACGCAACGAGGTTCCTTTCTTGTGCTGGGCCTGCTGGCCATACATTGTAGACCAGTTCATTAACGAGAGCTACATATGTGATGTTTGGAAAGTGGGATTGAGGTTTGATAAGAACAAGAGTGGGATCATCACAAATCAAGGACAAGGTGGAACAGCTTCTTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

85

Amino Acids

9.66

Weight (kDa)

5.47

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 138
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 125
AfaI GTAC 1 cut(s) 90
AjuI GAANNNNNNNTTGG 1 cut(s) 232
AluBI AGCT 2 cut(s) 159, 245
AluI AGCT 2 cut(s) 159, 245
AlwI GGATC 1 cut(s) 221
AoxI GGCC 2 cut(s) 117, 125
Asp700I GAANNNNTTC 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 4, 117
AvaII GGWCC 1 cut(s) 4
BalI TGGCCA 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 117
BmiI GGNNCC 2 cut(s) 6, 102
Bse1I ACTGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 142
BseYI CCCAGC 1 cut(s) 114
BshFI GGCC 2 cut(s) 119, 127
BsnI GGCC 2 cut(s) 119, 127
Bsp143I GATC 1 cut(s) 213
BspANI GGCC 2 cut(s) 119, 127
BspLI GGNNCC 2 cut(s) 6, 102
BspPI GGATC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 142
BssMI GATC 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 62
BstC8I GCNNGC 3 cut(s) 46, 121, 125
BstDEI CTNAG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 1 cut(s) 216
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 1 cut(s) 120
BsuRI GGCC 2 cut(s) 119, 127
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 58
Cac8I GCNNGC 3 cut(s) 46, 121, 125
Cfr13I GGNCC 2 cut(s) 4, 117
Csp6I GTAC 1 cut(s) 89
CviJI RGCY 4 cut(s) 119, 127, 159, 245
CviKI_1 RGCY 4 cut(s) 119, 127, 159, 245
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 1 cut(s) 53
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 4
FaiI YATR 3 cut(s) 130, 164, 166
FauNDI CATATG 1 cut(s) 164
FblI GTMKAC 1 cut(s) 138
FokI GGATG 1 cut(s) 18
GsaI CCCAGC 1 cut(s) 118
HaeIII GGCC 2 cut(s) 119, 127
Hpy166II GTNNAC 2 cut(s) 89, 139
Hpy8I GTNNAC 2 cut(s) 89, 139
HpyAV CCTTC 2 cut(s) 45, 77
HpyCH4III ACNGT 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 53
Kzo9I GATC 1 cut(s) 213
LpnPI CCDG 4 cut(s) 100, 109, 133, 155
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MlsI TGGCCA 1 cut(s) 127
MluNI TGGCCA 1 cut(s) 127
MnlI CCTC 2 cut(s) 91, 183
Mox20I TGGCCA 1 cut(s) 127
MroXI GAANNNNTTC 1 cut(s) 244
MscI TGGCCA 1 cut(s) 127
MseI TTAA 1 cut(s) 150
Msp20I TGGCCA 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeI CATATG 1 cut(s) 164
NdeII GATC 1 cut(s) 213
NlaIV GGNNCC 2 cut(s) 6, 102
NmuCI GTSAC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 6, 102
PspPI GGNCC 2 cut(s) 4, 117
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 150
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 2 cut(s) 4, 117
SetI ASST 6 cut(s) 88, 102, 161, 194, 238, 247
SinI GGWCC 1 cut(s) 4
TaaI ACNGT 1 cut(s) 62
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 65
TseFI GTSAC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 136
TspRI CASTG 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 4
XmiI GTMKAC 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.