RLG00000021580

UDP-glycosyltransferase 83A1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000438
Physical Location & Seq
Forward (+)
76572382 .. 76574095
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021580

Sequence Viewer

Length: 678 bp
ATGGTGGGATGGGCCCCACAACAGAAGGTTCTGGCCCATCCTTCAATTGCTTGCTTCCTAAGCCACTGTGGTTGGAACTCTATCTTGGAAGGTCTAAGCAATGGGGTTCCTTTCCTGTGTTGGCCATATTTTGCTGACCAGTTCCTTAATGAGAGCTACGTCTGTGATATTTGGAAGGTGGGATTAAGGCTTGATAAGAATAAAAGTGGGATCATAACGAAAGGAGAAATCAAGAACAAGGTGGAACAAGTCCTTGGCGGCAAAAATTTCAGTGCCAGGGCATCAAAACTCAAGGAACTAGCCATGATCAATGTTAAAGAAGCCGCAAACCACGCAAAGTCACCGAGCACCTACACGTCCGGATCCACCGACGAGGAACAACGTCAGCCAACCGGCTGCCCCTCCAAATCGGAATCAGGAGAACAGGCGGACCCCTGCACTCAATACCGGAATCCGACCTCGCATGGACCCGATAAGCACACCGCGATCTCCACTGGTCTTCCTCCATCGCCGAAAGACCCGCGACGTTCTCCGAGATTTGGTCCACCCACAGCCCAAGACAGTCGCCAAAACCCAGCCACGAATGCCGACTCCTTTACCCACCGAAACGCGAGCAACCAGAATCCAACAGCGAGGCCAACTCTACTCAAGGTGGAGAGAGACTTCCGCCGTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

226

Amino Acids

24.83

Weight (kDa)

9.37

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 2 - 98 3e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02100
fragaria_vesca FvH4_6g46970 FvH4_6g46980 FvH4_6g46990 FvH4_6g47000
malus_domestica MD09G1064700.v1.1 MD09G1064800.v1.1 MD09G1064900.v1.1 MD09G1065000.v1.1 MD09G1065400.v1.1 MD17G1058100.v1.1 MD17G1058200.v1.1 MD17G1058300.v1.1 MD17G1058400.v1.1
prunus_persica Prupe.3G255900_v2.0.a1 Prupe.3G256000_v2.0.a1 Prupe.3G256100_v2.0.a1 Prupe.3G256200_v2.0.a1 Prupe.3G256300_v2.0.a1
pyrus_communis pycom111g05440 pycom111g05460 pycom111g05470 pycom111g05480 pycom111g05520 pycom17g05820 pycom17g05830
rosa_chinensis RchiOBHm_Chr2g0165951 RchiOBHm_Chr2g0165961 RchiOBHm_Chr2g0165981 RchiOBHm_Chr2g0165991 RchiOBHm_Chr2g0166001 RchiOBHm_Chr2g0166011 RchiOBHm_Chr2g0166021 RchiOBHm_Chr2g0166031 RchiOBHm_Chr2g0166041 RchiOBHm_Chr2g0166061
rosa_laevigata RLG00000021572 RLG00000021573 RLG00000021576 RLG00000021577 RLG00000021578 RLG00000021579 RLG00000021580
rosa_multiflora Rmu_co8157352.1_g000001 Rmu_sc0006218.1_g000013 Rmu_sc0006218.1_g000014 Rmu_sc0006218.1_g000015 Rmu_sc0006218.1_g000016 Rmu_sc0006218.1_g000017 Rmu_sc0006218.1_g000018 Rmu_sc0006218.1_g000019 Rmu_sc0006218.1_g000021 Rmu_ssc0000076.1_g000012 Rmu_ssc0000076.1_g000013
rosa_roxburghii Rroxscaffold_2G00085260 Rroxscaffold_2G00085270 Rroxscaffold_2G00085280
rosa_rugosa Rorug02G0519300 Rorug02G0519300 Rorug02G0519400 Rorug02G0519500 Rorug02G0519600 Rorug02G0519700 Rorug02G0519800 Rorug02G0519900.1
rosa_samantha Rh2AG585200 Rh2AG585300 Rh2AG585400 Rh2AG585500 Rh2AG585600 Rh2AG585700 Rh2AG585800 Rh2BG588800 Rh2BG597000 Rh2BG597100 Rh2BG597200 Rh2BG597300 Rh2BG597400 Rh2BG597500 Rh2CG567800 Rh2CG567900 Rh2CG568000 Rh2CG568100 Rh2DG607100 Rh2DG607200 Rh2DG607400 Rh2DG607500 Rh2DG607600
rosa_wichuraiana Rw2G047970 Rw2G048790 Rw2G048800 Rw2G048810 Rw2G048820 Rw2G048830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 485, 523, 611
AccIII TCCGGA 1 cut(s) 359
AciI CCGC 6 cut(s) 258, 324, 428, 483, 521, 667
AclWI GGATC 3 cut(s) 218, 357, 370
AcoI YGGCCR 1 cut(s) 122
AcsI RAATTY 1 cut(s) 265
AfiI CCNNNNNNNGG 1 cut(s) 539
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 1 cut(s) 45
AjiI CACGTC 1 cut(s) 357
AjnI CCWGG 1 cut(s) 275
AjuI GAANNNNNNNTTGG 4 cut(s) 68, 100, 237, 269
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
Alw21I GWGCWC 1 cut(s) 350
Alw26I GTCTC 1 cut(s) 654
AlwI GGATC 3 cut(s) 218, 357, 370
Aor13HI TCCGGA 1 cut(s) 359
AoxI GGCC 4 cut(s) 12, 33, 122, 635
ApaI GGGCCC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 396
ApoI RAATTY 1 cut(s) 265
AspS9I GGNCC 6 cut(s) 12, 13, 34, 430, 467, 542
AsuHPI GGTGA 1 cut(s) 333
AvaII GGWCC 3 cut(s) 430, 467, 542
BaeGI GKGCMC 1 cut(s) 16
BalI TGGCCA 1 cut(s) 124
BamHI GGATCC 1 cut(s) 362
BanII GRGCYC 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 491
Bbv12I GWGCWC 1 cut(s) 350
BbvI GCAGC 1 cut(s) 383
BccI CCATC 3 cut(s) 3, 45, 514
BceAI ACGGC 1 cut(s) 654
BciT130I CCWGG 1 cut(s) 277
BclI TGATCA 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 654
BfaI CTAG 2 cut(s) 299, 676
BisI GCNGC 3 cut(s) 259, 324, 397
BlsI GCNGC 3 cut(s) 260, 325, 398
Bme1390I CCNGG 1 cut(s) 277
Bme18I GGWCC 3 cut(s) 430, 467, 542
BmgBI CACGTC 1 cut(s) 357
BmgT120I GGNCC 6 cut(s) 12, 13, 34, 430, 467, 542
BmiI GGNNCC 6 cut(s) 14, 15, 108, 364, 432, 469
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 491
BplI GAGNNNNNCTC 2 cut(s) 625, 657
Bpu10I CCTNAGC 1 cut(s) 59
BpuEI CTTGAG 2 cut(s) 275, 632
BsaJI CCNNGG 2 cut(s) 253, 276
BsaWI WCCGGW 2 cut(s) 359, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 539
Bse118I RCCGGY 1 cut(s) 392
Bse1I ACTGG 2 cut(s) 139, 499
Bse3DI GCAATG 1 cut(s) 106
BseAI TCCGGA 1 cut(s) 359
BseBI CCWGG 1 cut(s) 277
BseDI CCNNGG 2 cut(s) 253, 276
BseGI GGATG 2 cut(s) 14, 37
BseLI CCNNNNNNNGG 1 cut(s) 539
BseMI GCAATG 1 cut(s) 106
BseNI ACTGG 2 cut(s) 139, 499
BseSI GKGCMC 1 cut(s) 16
BseXI GCAGC 1 cut(s) 383
BseYI CCCAGC 1 cut(s) 574
BsgI GTGCAG 1 cut(s) 421
Bsh1236I CGCG 3 cut(s) 485, 523, 611
BshFI GGCC 4 cut(s) 14, 35, 124, 637
BsiHKAI GWGCWC 1 cut(s) 350
BsiSI CCGG 3 cut(s) 360, 393, 448
BslI CCNNNNNNNGG 1 cut(s) 539
BsmAI GTCTC 1 cut(s) 654
BsmI GAATGC 1 cut(s) 589
BsnI GGCC 4 cut(s) 14, 35, 124, 637
Bsp120I GGGCCC 1 cut(s) 12
Bsp1286I GDGCHC 2 cut(s) 16, 350
Bsp13I TCCGGA 1 cut(s) 359
Bsp143I GATC 4 cut(s) 210, 306, 362, 486
BspACI CCGC 6 cut(s) 258, 324, 428, 483, 521, 667
BspANI GGCC 4 cut(s) 14, 35, 124, 637
BspEI TCCGGA 1 cut(s) 359
BspFNI CGCG 3 cut(s) 485, 523, 611
BspLI GGNNCC 6 cut(s) 14, 15, 108, 364, 432, 469
BspPI GGATC 3 cut(s) 218, 357, 370
BsrDI GCAATG 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 392
BsrI ACTGG 2 cut(s) 139, 499
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 2 cut(s) 253, 276
BssMI GATC 4 cut(s) 210, 306, 362, 486
BssT1I CCWWGG 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 2 cut(s) 68, 563
BstC8I GCNNGC 2 cut(s) 52, 613
BstDEI CTNAG 2 cut(s) 59, 95
BstF5I GGATG 2 cut(s) 14, 37
BstFNI CGCG 3 cut(s) 485, 523, 611
BstKTI GATC 4 cut(s) 213, 309, 365, 489
BstMAI GTCTC 1 cut(s) 654
BstMBI GATC 4 cut(s) 210, 306, 362, 486
BstMWI GCNNNNNNNGC 3 cut(s) 60, 332, 584
BstNI CCWGG 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 275
BstSLI GKGCMC 1 cut(s) 16
BstUI CGCG 3 cut(s) 485, 523, 611
BstV1I GCAGC 1 cut(s) 383
BstV2I GAAGAC 1 cut(s) 491
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
BsuRI GGCC 4 cut(s) 14, 35, 124, 637
BtgZI GCGATG 1 cut(s) 492
BtrI CACGTC 1 cut(s) 357
BtsCI GGATG 2 cut(s) 14, 37
BtsIMutI CAGTG 3 cut(s) 64, 277, 492
Cac8I GCNNGC 2 cut(s) 52, 613
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 6 cut(s) 12, 13, 34, 430, 467, 542
CspCI CAANNNNNGTGG 2 cut(s) 53, 88
CviAII CATG 2 cut(s) 304, 464
DdeI CTNAG 2 cut(s) 59, 95
DpnI GATC 4 cut(s) 212, 308, 364, 488
DpnII GATC 4 cut(s) 210, 306, 362, 486
EaeI YGGCCR 1 cut(s) 122
EciI GGCGGA 2 cut(s) 443, 656
Eco130I CCWWGG 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 16
Eco47I GGWCC 3 cut(s) 430, 467, 542
EcoO109I RGGNCCY 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 2 cut(s) 307, 467
FaiI YATR 4 cut(s) 127, 215, 305, 465
FatI CATG 2 cut(s) 303, 463
FauI CCCGC 1 cut(s) 528
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 3 cut(s) 259, 324, 397
FokI GGATG 2 cut(s) 21, 24
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 3 cut(s) 259, 324, 397
FspBI CTAG 2 cut(s) 299, 676
GluI GCNGC 3 cut(s) 259, 324, 397
GsaI CCCAGC 1 cut(s) 578
HaeIII GGCC 4 cut(s) 14, 35, 124, 637
HapII CCGG 3 cut(s) 360, 393, 448
Hin1II CATG 2 cut(s) 307, 467
HinfI GANTC 4 cut(s) 413, 451, 590, 622
HpaII CCGG 3 cut(s) 360, 393, 448
HphI GGTGA 1 cut(s) 333
Hpy166II GTNNAC 1 cut(s) 545
Hpy188I TCNGA 3 cut(s) 412, 456, 534
Hpy188III TCNNGA 3 cut(s) 232, 360, 417
Hpy8I GTNNAC 1 cut(s) 545
Hpy99I CGWCG 3 cut(s) 374, 528, 675
HpyAV CCTTC 4 cut(s) 19, 51, 83, 169
HpyCH4III ACNGT 2 cut(s) 68, 563
HpyCH4IV ACGT 4 cut(s) 159, 356, 382, 526
HpyCH4V TGCA 1 cut(s) 438
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 332, 584
HpyF3I CTNAG 2 cut(s) 59, 95
HpySE526I ACGT 4 cut(s) 159, 356, 382, 526
Hsp92II CATG 2 cut(s) 307, 467
Kpn2I TCCGGA 1 cut(s) 359
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 4 cut(s) 210, 306, 362, 486
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 1 cut(s) 290
MaeI CTAG 2 cut(s) 299, 676
MaeII ACGT 4 cut(s) 159, 356, 382, 526
MaeIII GTNAC 1 cut(s) 339
MalI GATC 4 cut(s) 212, 308, 364, 488
MboI GATC 4 cut(s) 210, 306, 362, 486
MboII GAAGA 1 cut(s) 491
MfeI CAATTG 1 cut(s) 45
MflI RGATCY 1 cut(s) 362
MhlI GDGCHC 2 cut(s) 16, 350
MlsI TGGCCA 1 cut(s) 124
MluCI AATT 2 cut(s) 45, 265
MluNI TGGCCA 1 cut(s) 124
MlyI GAGTC 1 cut(s) 584
MmeI TCCRAC 3 cut(s) 53, 479, 650
MnlI CCTC 5 cut(s) 367, 412, 469, 513, 627
Mox20I TGGCCA 1 cut(s) 124
MroI TCCGGA 1 cut(s) 359
MscI TGGCCA 1 cut(s) 124
MseI TTAA 3 cut(s) 147, 185, 315
Msp20I TGGCCA 1 cut(s) 124
MspI CCGG 3 cut(s) 360, 393, 448
MspR9I CCNGG 1 cut(s) 277
MunI CAATTG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 589
MvaI CCWGG 1 cut(s) 277
MvnI CGCG 3 cut(s) 485, 523, 611
MwoI GCNNNNNNNGC 3 cut(s) 60, 332, 584
NdeII GATC 4 cut(s) 210, 306, 362, 486
NlaIII CATG 2 cut(s) 307, 467
NlaIV GGNNCC 6 cut(s) 14, 15, 108, 364, 432, 469
NmuCI GTSAC 1 cut(s) 339
PctI GAATGC 1 cut(s) 589
PfeI GAWTC 3 cut(s) 413, 451, 622
PkrI GCNGC 3 cut(s) 260, 325, 398
PleI GAGTC 1 cut(s) 584
PpsI GAGTC 1 cut(s) 584
Psp6I CCWGG 1 cut(s) 275
PspFI CCCAGC 1 cut(s) 574
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 6 cut(s) 14, 15, 108, 364, 432, 469
PspOMI GGGCCC 1 cut(s) 12
PspPI GGNCC 6 cut(s) 12, 13, 34, 430, 467, 542
PsuI RGATCY 1 cut(s) 362
SaqAI TTAA 3 cut(s) 147, 185, 315
SatI GCNGC 3 cut(s) 259, 324, 397
Sau3AI GATC 4 cut(s) 210, 306, 362, 486
Sau96I GGNCC 6 cut(s) 12, 13, 34, 430, 467, 542
SchI GAGTC 1 cut(s) 584
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 2 cut(s) 16, 350
SfaNI GCATC 1 cut(s) 290
SinI GGWCC 3 cut(s) 430, 467, 542
SmlI CTYRAG 2 cut(s) 290, 647
SmoI CTYRAG 2 cut(s) 290, 647
Sse9I AATT 2 cut(s) 45, 265
SsiI CCGC 6 cut(s) 258, 324, 428, 483, 521, 667
SspMI CTAG 2 cut(s) 299, 676
StyD4I CCNGG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 68, 563
TaiI ACGT 4 cut(s) 162, 359, 385, 529
TasI AATT 2 cut(s) 45, 265
TauI GCSGC 2 cut(s) 261, 326
TfiI GAWTC 3 cut(s) 413, 451, 622
Tru1I TTAA 3 cut(s) 147, 185, 315
Tru9I TTAA 3 cut(s) 147, 185, 315
TscAI CASTG 3 cut(s) 71, 277, 499
TseFI GTSAC 1 cut(s) 339
TseI GCWGC 1 cut(s) 396
Tsp45I GTSAC 1 cut(s) 339
TspRI CASTG 3 cut(s) 71, 277, 499
VpaK11BI GGWCC 3 cut(s) 430, 467, 542
XapI RAATTY 1 cut(s) 265
XspI CTAG 2 cut(s) 299, 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.